Cow genome map
| Conread name: | rmgp011_m12.y1 |
| Conread position: | 1-195 |
| Cow position: | chr22:36180687-36180879 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-236 |
| Cow position: | chr22:8136665-8136421 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 96, 181 |
| Conread position: | 1-240 |
| Cow position: | chr22:37073612-37073389 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 25, 101 |
| Conread position: | 1-243 |
| Cow position: | chr22:526368-526128 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 177 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 171, 0 |
| Conread position: | 1-243 |
| Cow position: | chr22:561157-560918 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 178 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-243 |
| Cow position: | chr22:1293947-1293715 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 185 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 50, 6 |
| Conread position: | 1-243 |
| Cow position: | chr22:6504115-6503889 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 25, 78 |
| Conread position: | 1-243 |
| Cow position: | chr22:17329195-17328958 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 182 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 67, 20 |
| Conread position: | 1-243 |
| Cow position: | chr22:21588871-21589114 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 182 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 29, 234 |
| Conread position: | 1-243 |
| Cow position: | chr22:31312886-31313126 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 1-243 |
| Cow position: | chr22:44933521-44933761 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-243 |
| Cow position: | chr22:45880572-45880353 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 2-243 |
| Cow position: | chr22:44353405-44353166 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 178 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 4-243 |
| Cow position: | chr22:5933435-5933198 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 24, 53 |
| Conread position: | 4-243 |
| Cow position: | chr22:42990711-42990953 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 30, 233 |
| Conread position: | 5-231 |
| Cow position: | chr22:1270960-1270728 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 152, 50 |
| Conread position: | 6-243 |
| Cow position: | chr22:5307665-5307899 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 19 |
| Conread position: | 13-241 |
| Cow position: | chr22:13772347-13772570 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 9, 113 |
| Conread position: | 13-243 |
| Cow position: | chr22:31335479-31335251 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 174 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 13-243 |
| Cow position: | chr22:39469965-39469736 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 14-243 |
| Cow position: | chr22:118262-118034 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 174 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 20, 10 |
| Conread position: | 15-243 |
| Cow position: | chr22:37067355-37067129 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 8, 85 |
| Conread position: | 16-242 |
| Cow position: | chr22:7277074-7277303 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 175 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 6, 225 |
| Conread position: | 19-174 |
| Cow position: | chr22:40380755-40380911 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 18, 140 |
| Conread position: | 19-227 |
| Cow position: | chr22:46852901-46853117 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 169, 0 |
| Conread position: | 19-233 |
| Cow position: | chr22:12732502-12732300 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 30, 122 |
| Conread position: | 19-242 |
| Cow position: | chr22:3307152-3306947 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 21-235 |
| Cow position: | chr22:1321184-1321388 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 169 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 21-240 |
| Cow position: | chr22:41420124-41419904 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 167 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 86, 76 |
| Conread position: | 21-242 |
| Cow position: | chr22:309284-309495 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 164, 92 |
| Conread position: | 21-242 |
| Cow position: | chr22:19144137-19143919 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 166 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 184, 0 |
| Conread position: | 21-243 |
| Cow position: | chr22:693200-693413 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 143, 164 |
| Conread position: | 21-243 |
| Cow position: | chr22:1285372-1285150 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 42, 213 |
| Conread position: | 21-243 |
| Cow position: | chr22:15850906-15851120 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 21-243 |
| Cow position: | chr22:44395343-44395562 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 21-243 |
| Cow position: | chr22:44456872-44457095 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 168 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 70, 213 |
| Conread position: | 22-218 |
| Cow position: | chr22:39882611-39882415 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 152 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-243 |
| Cow position: | chr22:1318956-1319177 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 48, 212 |
| Conread position: | 22-243 |
| Cow position: | chr22:34167893-34168113 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 165 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 211, 0 |
| Conread position: | 22-243 |
| Cow position: | chr22:46585750-46585530 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 211, 0 |
| Conread position: | 25-243 |
| Cow position: | chr22:46636129-46635916 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 26-203 |
| Cow position: | chr22:18930143-18930320 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 26-242 |
| Cow position: | chr22:10546216-10546431 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 163 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 26-243 |
| Cow position: | chr22:327583-327366 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 164 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 203, 199 |
| Conread position: | 26-243 |
| Cow position: | chr22:3278784-3278572 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 26-243 |
| Cow position: | chr22:5233731-5233520 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 26-243 |
| Cow position: | chr22:6984820-6985036 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 26-243 |
| Cow position: | chr22:10910286-10910073 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 187, 0 |
| Conread position: | 26-243 |
| Cow position: | chr22:16200060-16200274 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 171, 0 |
| Conread position: | 26-243 |
| Cow position: | chr22:24949395-24949611 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 26-243 |
| Cow position: | chr22:27310211-27309995 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 26-243 |
| Cow position: | chr22:35672790-35672574 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 26-243 |
| Cow position: | chr22:37265017-37265236 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 42, 32 |
| Conread position: | 26-243 |
| Cow position: | chr22:44370048-44369836 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 26-243 |
| Cow position: | chr22:44489452-44489671 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 93, 192 |
| Conread position: | 27-243 |
| Cow position: | chr22:18476194-18475981 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 41, 34 |
| Conread position: | 29-232 |
| Cow position: | chr22:5672307-5672510 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-243 |
| Cow position: | chr22:36534396-36534182 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 166 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 135, 205 |
| Conread position: | 37-243 |
| Cow position: | chr22:37131227-37131432 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 33, 188 |
| Conread position: | 45-243 |
| Cow position: | chr22:36861946-36861749 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 188, 0 |
| Conread position: | 46-243 |
| Cow position: | chr22:42771133-42771329 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 186, 0 |
| Conread position: | 47-235 |
| Cow position: | chr22:10077160-10076973 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 110, 33 |
| Conread position: | 49-243 |
| Cow position: | chr22:18816793-18816601 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 50-243 |
| Cow position: | chr22:36736364-36736551 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 60-243 |
| Cow position: | chr22:158315-158129 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 107, 177 |
| Conread position: | 63-243 |
| Cow position: | chr22:1878392-1878573 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 9, 102 |
| Conread position: | 71-243 |
| Cow position: | chr22:32485717-32485551 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 90-243 |
| Cow position: | chr22:4065270-4065422 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 143, 0 |
Show alignments to all cow chromosomes.