Cow genome map
| Conread name: | rmgp011_m12.y1 |
| Conread position: | 1-169 |
| Cow position: | chr24:16085056-16084884 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 21, 65 |
| Conread position: | 1-173 |
| Cow position: | chr24:12131855-12131683 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-204 |
| Cow position: | chr24:148964-148763 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-209 |
| Cow position: | chr24:17314692-17314479 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 1-231 |
| Cow position: | chr24:6335325-6335550 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 176 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-231 |
| Cow position: | chr24:12207770-12207997 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 155, 60 |
| Conread position: | 1-236 |
| Cow position: | chr24:29186433-29186667 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-243 |
| Cow position: | chr24:4415907-4415656 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 38, 242 |
| Conread position: | 1-243 |
| Cow position: | chr24:7060730-7060969 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 30, 37 |
| Conread position: | 1-243 |
| Cow position: | chr24:12114403-12114166 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 179 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 1-243 |
| Cow position: | chr24:13181708-13181472 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 184 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 1-243 |
| Cow position: | chr24:16649667-16649433 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 73, 27 |
| Conread position: | 2-243 |
| Cow position: | chr24:1447209-1447437 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 8-235 |
| Cow position: | chr24:12236694-12236917 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 17, 53 |
| Conread position: | 13-241 |
| Cow position: | chr24:19833021-19833249 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 221 |
| Conread position: | 13-243 |
| Cow position: | chr24:12161519-12161746 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 59, 14 |
| Conread position: | 15-215 |
| Cow position: | chr24:14583739-14583937 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 169, 0 |
| Conread position: | 19-242 |
| Cow position: | chr24:15392653-15392437 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 173 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 37, 141 |
| Conread position: | 19-243 |
| Cow position: | chr24:17187190-17187413 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 170 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 214, 0 |
| Conread position: | 21-159 |
| Cow position: | chr24:30117157-30117299 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 21-210 |
| Cow position: | chr24:32330993-32331182 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 144, 34 |
| Conread position: | 21-227 |
| Cow position: | chr24:32125848-32125651 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 200, 101 |
| Conread position: | 21-233 |
| Cow position: | chr24:35841956-35841755 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 21-236 |
| Cow position: | chr24:37216373-37216588 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 21-240 |
| Cow position: | chr24:6057327-6057535 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 45, 11 |
| Conread position: | 21-240 |
| Cow position: | chr24:14391075-14390857 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 212, 0 |
| Conread position: | 21-243 |
| Cow position: | chr24:6145006-6145227 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 169 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 212, 0 |
| Conread position: | 21-243 |
| Cow position: | chr24:6351839-6352063 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 47, 38 |
| Conread position: | 21-243 |
| Cow position: | chr24:12289070-12288855 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 21-243 |
| Cow position: | chr24:33933014-33933235 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 0 |
| Conread position: | 21-243 |
| Cow position: | chr24:35838979-35838758 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 149, 14 |
| Conread position: | 21-243 |
| Cow position: | chr24:35991005-35990788 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 167 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 21-243 |
| Cow position: | chr24:36296814-36297037 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 38, 122 |
| Conread position: | 21-243 |
| Cow position: | chr24:36707507-36707725 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 127, 94 |
| Conread position: | 22-240 |
| Cow position: | chr24:14384962-14384747 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 46, 35 |
| Conread position: | 23-243 |
| Cow position: | chr24:12798102-12797893 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 24-235 |
| Cow position: | chr24:38635396-38635600 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 28, 138 |
| Conread position: | 26-223 |
| Cow position: | chr24:6645069-6645266 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 26-243 |
| Cow position: | chr24:5993319-5993107 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 73, 116 |
| Conread position: | 26-243 |
| Cow position: | chr24:6025445-6025228 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 188, 208 |
| Conread position: | 26-243 |
| Cow position: | chr24:6083668-6083884 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 26-243 |
| Cow position: | chr24:13021323-13021539 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 166 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 26-243 |
| Cow position: | chr24:20267869-20268085 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 26-243 |
| Cow position: | chr24:22792828-22793044 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 167 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 26-243 |
| Cow position: | chr24:33739691-33739477 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 177, 0 |
| Conread position: | 27-243 |
| Cow position: | chr24:44017198-44017413 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 165 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 28-224 |
| Cow position: | chr24:7712638-7712449 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 28-243 |
| Cow position: | chr24:6433891-6434108 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 167 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 91, 208 |
| Conread position: | 28-243 |
| Cow position: | chr24:9189077-9188864 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 162 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 31-243 |
| Cow position: | chr24:13187851-13188055 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 34-243 |
| Cow position: | chr24:12485659-12485450 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 5, 200 |
| Conread position: | 37-243 |
| Cow position: | chr24:12085862-12086067 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 196, 0 |
| Conread position: | 44-152 |
| Cow position: | chr24:11156973-11156865 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 86 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 50-243 |
| Cow position: | chr24:36560396-36560216 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 53-243 |
| Cow position: | chr24:37301395-37301210 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 157, 106 |
| Conread position: | 62-243 |
| Cow position: | chr24:13531847-13531663 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 149 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 104-243 |
| Cow position: | chr24:2635849-2635987 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 113-243 |
| Cow position: | chr24:8029889-8030018 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 120, 0 |
Show alignments to all cow chromosomes.