Cow genome map
| Conread name: | rmgp011_m12.y1 |
| Conread position: | 1-172 |
| Cow position: | chr28:3193189-3193019 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-192 |
| Cow position: | chr28:15035830-15035640 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-196 |
| Cow position: | chr28:2990377-2990186 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 23, 80 |
| Conread position: | 1-196 |
| Cow position: | chr28:5752575-5752380 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 23, 12 |
| Conread position: | 1-219 |
| Cow position: | chr28:7790648-7790436 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 1-231 |
| Cow position: | chr28:26426684-26426457 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 29, 79 |
| Conread position: | 1-235 |
| Cow position: | chr28:14706085-14705852 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 175 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-243 |
| Cow position: | chr28:1168578-1168338 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 180 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-243 |
| Cow position: | chr28:5115484-5115254 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-243 |
| Cow position: | chr28:5565447-5565687 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-243 |
| Cow position: | chr28:5812294-5812536 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 28, 35 |
| Conread position: | 1-243 |
| Cow position: | chr28:8378152-8378393 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 177 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 156, 20 |
| Conread position: | 1-243 |
| Cow position: | chr28:12149906-12150148 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 181 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 38, 13 |
| Conread position: | 1-243 |
| Cow position: | chr28:13522310-13522553 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 234 |
| Conread position: | 1-243 |
| Cow position: | chr28:17388067-17388307 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-243 |
| Cow position: | chr28:17667926-17667686 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 178 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 1-243 |
| Cow position: | chr28:18181767-18181529 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 23, 120 |
| Conread position: | 1-243 |
| Cow position: | chr28:18520875-18520635 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-243 |
| Cow position: | chr28:21358606-21358846 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 1-243 |
| Cow position: | chr28:29819157-29819396 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 2-193 |
| Cow position: | chr28:1504228-1504418 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 2-196 |
| Cow position: | chr28:33251930-33252124 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 20, 11 |
| Conread position: | 2-243 |
| Cow position: | chr28:34648532-34648762 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 163, 24 |
| Conread position: | 5-240 |
| Cow position: | chr28:7816835-7817054 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 13-184 |
| Cow position: | chr28:15378418-15378246 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 13-196 |
| Cow position: | chr28:7739850-7740035 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 13-243 |
| Cow position: | chr28:10582385-10582159 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 171 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 13-243 |
| Cow position: | chr28:22261555-22261325 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 9, 220 |
| Conread position: | 13-243 |
| Cow position: | chr28:32792783-32792553 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 174 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 8, 221 |
| Conread position: | 15-243 |
| Cow position: | chr28:5796425-5796647 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 15-243 |
| Cow position: | chr28:26007634-26007859 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 12, 44 |
| Conread position: | 16-243 |
| Cow position: | chr28:9155678-9155459 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 152, 16 |
| Conread position: | 19-243 |
| Cow position: | chr28:2591526-2591745 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 19-243 |
| Cow position: | chr28:15681496-15681719 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 0 |
| Conread position: | 21-242 |
| Cow position: | chr28:15585002-15585219 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 47, 39 |
| Conread position: | 21-243 |
| Cow position: | chr28:782002-782224 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 21, 213 |
| Conread position: | 21-243 |
| Cow position: | chr28:1387785-1387565 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 0 |
| Conread position: | 21-243 |
| Cow position: | chr28:10619491-10619275 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 42, 19 |
| Conread position: | 21-243 |
| Cow position: | chr28:13459579-13459797 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 167 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 21-243 |
| Cow position: | chr28:22827669-22827879 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 21-243 |
| Cow position: | chr28:34593448-34593669 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 212, 0 |
| Conread position: | 22-243 |
| Cow position: | chr28:2083210-2083430 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 211, 0 |
| Conread position: | 22-243 |
| Cow position: | chr28:21325400-21325615 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 171 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 146, 75 |
| Conread position: | 24-182 |
| Cow position: | chr28:24667222-24667380 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 24-243 |
| Cow position: | chr28:8721836-8721616 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 216 |
| Conread position: | 26-212 |
| Cow position: | chr28:489100-489286 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 26-243 |
| Cow position: | chr28:1952754-1952959 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 26-243 |
| Cow position: | chr28:6780717-6780503 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 26-243 |
| Cow position: | chr28:14750158-14750374 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 26-243 |
| Cow position: | chr28:15920849-15920640 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 26-243 |
| Cow position: | chr28:15950591-15950807 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 0 |
| Conread position: | 29-243 |
| Cow position: | chr28:9953748-9953961 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 0 |
| Conread position: | 32-243 |
| Cow position: | chr28:13441261-13441051 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 201, 0 |
| Conread position: | 45-243 |
| Cow position: | chr28:7900987-7901180 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 25, 115 |
| Conread position: | 49-242 |
| Cow position: | chr28:32331765-32331576 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 50-243 |
| Cow position: | chr28:17330898-17330695 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 104, 187 |
| Conread position: | 58-243 |
| Cow position: | chr28:7821907-7822080 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 62-196 |
| Cow position: | chr28:9137382-9137248 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 62-243 |
| Cow position: | chr28:1815221-1815042 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 171, 0 |
| Conread position: | 77-243 |
| Cow position: | chr28:7001651-7001814 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 80-243 |
| Cow position: | chr28:24587100-24587259 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 18, 63 |
| Conread position: | 119-243 |
| Cow position: | chr28:4381106-4380991 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 55, 0 |
Show alignments to all cow chromosomes.