Cow genome map

Conread name: rmgp011_m12.y1

Conread position: 1-159
Cow position: chr5:28006599-28006756 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 13, 9

Conread position: 1-174
Cow position: chr5:46006062-46005889 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 122
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 156, 18

Conread position: 1-223
Cow position: chr5:46644079-46644299 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 164
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 18, 0

Conread position: 1-240
Cow position: chr5:416351-416113 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 166
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 49, 20

Conread position: 1-240
Cow position: chr5:49119909-49119671 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 177
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 20, 0

Conread position: 1-241
Cow position: chr5:3785180-3785418 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 175
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 20, 0

Conread position: 1-243
Cow position: chr5:1342427-1342187 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 175
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 20, 0

Conread position: 1-243
Cow position: chr5:2430763-2430524 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 1-243
Cow position: chr5:2913819-2914059 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 176
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 20, 0

Conread position: 1-243
Cow position: chr5:3504873-3504638 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 172
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 14, 0

Conread position: 1-243
Cow position: chr5:4068359-4068599 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 179
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 20, 0

Conread position: 1-243
Cow position: chr5:4384595-4384838 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 180
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 21, 83

Conread position: 1-243
Cow position: chr5:6519264-6519500 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 37

Conread position: 1-243
Cow position: chr5:7273235-7273474 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 173
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 20, 0

Conread position: 1-243
Cow position: chr5:10918164-10918406 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 181
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 22, 233

Conread position: 1-243
Cow position: chr5:12682135-12681900 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 179
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 27, 152

Conread position: 1-243
Cow position: chr5:37731714-37731954 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 180
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 20, 0

Conread position: 1-243
Cow position: chr5:41530201-41529959 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 27

Conread position: 1-243
Cow position: chr5:41963563-41963323 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 179
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 11, 86

Conread position: 1-243
Cow position: chr5:45182732-45182493 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 184
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 21, 143

Conread position: 1-243
Cow position: chr5:49594091-49593850 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 99

Conread position: 1-243
Cow position: chr5:61273797-61273559 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 188
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 36, 160

Conread position: 1-243
Cow position: chr5:64782653-64782408 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 177
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 33, 236

Conread position: 4-243
Cow position: chr5:32674361-32674127 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 183
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 16, 175

Conread position: 5-243
Cow position: chr5:57483177-57482938 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 177
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 29, 235

Conread position: 8-236
Cow position: chr5:58747267-58747488 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 167
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 32, 0

Conread position: 13-243
Cow position: chr5:24098025-24098257 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 174
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 8, 222

Conread position: 13-243
Cow position: chr5:30578704-30578931 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 166
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 9, 85

Conread position: 13-243
Cow position: chr5:32945259-32945489 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 74

Conread position: 13-243
Cow position: chr5:34695963-34696192 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 170
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 9, 185

Conread position: 13-243
Cow position: chr5:46739203-46738976 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 177
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 9, 86

Conread position: 13-243
Cow position: chr5:48809334-48809104 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 168
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 8, 43

Conread position: 13-243
Cow position: chr5:54793239-54793009 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 175
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 8, 225

Conread position: 13-243
Cow position: chr5:59282141-59282371 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 174
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 8, 221

Conread position: 15-243
Cow position: chr5:23716563-23716339 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 0

Conread position: 15-243
Cow position: chr5:29008743-29008968 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 166
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 30, 9

Conread position: 16-182
Cow position: chr5:29437578-29437410 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 124
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 7, 140

Conread position: 16-243
Cow position: chr5:23227642-23227869 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 167
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 7, 174

Conread position: 19-243
Cow position: chr5:49181672-49181890 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 172
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 142, 0

Conread position: 21-159
Cow position: chr5:27060684-27060550 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 111
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 50, 0

Conread position: 21-190
Cow position: chr5:73489938-73489769 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 21-221
Cow position: chr5:58061434-58061236 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 139
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 28, 101

Conread position: 21-236
Cow position: chr5:23688083-23687867 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 169
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 21-241
Cow position: chr5:30088319-30088112 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 153
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 83, 0

Conread position: 21-243
Cow position: chr5:6158805-6158588 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 166
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 69, 0

Conread position: 21-243
Cow position: chr5:27488418-27488628 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 161
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 65, 118

Conread position: 21-243
Cow position: chr5:49101032-49101246 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 153
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 38, 0

Conread position: 21-243
Cow position: chr5:51162305-51162525 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 150
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 180, 47

Conread position: 21-243
Cow position: chr5:55627392-55627613 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 167
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 212, 0

Conread position: 22-243
Cow position: chr5:9687018-9686805 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 171
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 31, 127

Conread position: 22-243
Cow position: chr5:24329683-24329908 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 173
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 44, 216

Conread position: 22-243
Cow position: chr5:25001528-25001314 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 153
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 114, 0

Conread position: 22-243
Cow position: chr5:52804723-52804943 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 0

Conread position: 23-243
Cow position: chr5:54619862-54620076 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 153
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 27, 145

Conread position: 26-241
Cow position: chr5:47831700-47831498 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 154
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 120, 60

Conread position: 26-243
Cow position: chr5:2530669-2530879 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 160
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 32, 0

Conread position: 26-243
Cow position: chr5:3963870-3964079 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 165
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 41, 31

Conread position: 26-243
Cow position: chr5:10443808-10443594 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 157
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 138, 159

Conread position: 26-243
Cow position: chr5:10776855-10776644 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 164
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 43, 35

Conread position: 26-243
Cow position: chr5:10844482-10844266 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 160
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 206, 0

Conread position: 26-243
Cow position: chr5:14379562-14379771 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 157
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 113, 0

Conread position: 26-243
Cow position: chr5:18663640-18663856 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 165
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 207, 0

Conread position: 26-243
Cow position: chr5:18665354-18665570 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 165
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 207, 0

Conread position: 26-243
Cow position: chr5:23960715-23960499 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 167
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 207, 0

Conread position: 26-243
Cow position: chr5:24576306-24576522 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 160
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 187, 135

Conread position: 26-243
Cow position: chr5:26079825-26079610 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 164
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 33, 0

Conread position: 26-243
Cow position: chr5:27909875-27909659 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 161
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 207, 0

Conread position: 26-243
Cow position: chr5:31705970-31706183 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 158
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 98, 0

Conread position: 26-243
Cow position: chr5:35299456-35299672 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 161
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 207, 0

Conread position: 26-243
Cow position: chr5:37755746-37755530 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 161
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 211, 0

Conread position: 26-243
Cow position: chr5:42504151-42504364 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 161
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 87, 0

Conread position: 26-243
Cow position: chr5:46663398-46663610 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 164
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 131, 0

Conread position: 26-243
Cow position: chr5:46775485-46775694 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 157
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 113, 0

Conread position: 26-243
Cow position: chr5:48468882-48468668 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 163
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 162, 0

Conread position: 26-243
Cow position: chr5:58195396-58195611 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 163
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 138, 94

Conread position: 26-243
Cow position: chr5:59060012-59060233 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 161
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 125, 212

Conread position: 26-243
Cow position: chr5:59144172-59144390 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 169
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 35, 74

Conread position: 26-243
Cow position: chr5:59481645-59481863 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 165
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 35, 167

Conread position: 27-243
Cow position: chr5:26769207-26769419 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 163
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 151, 163

Conread position: 27-243
Cow position: chr5:53714650-53714865 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 164
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 206, 0

Conread position: 28-243
Cow position: chr5:4019803-4019590 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 157
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 34, 0

Conread position: 28-243
Cow position: chr5:27000601-27000806 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 154
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 33, 0

Conread position: 28-243
Cow position: chr5:32771877-32772090 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 160
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 38, 0

Conread position: 28-243
Cow position: chr5:39165403-39165188 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 165
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 139, 210

Conread position: 29-170
Cow position: chr5:55149898-55149759 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 104
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 105, 0

Conread position: 29-243
Cow position: chr5:26090433-26090217 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 165
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 107, 67

Conread position: 29-243
Cow position: chr5:28030889-28031093 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 156
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 147, 0

Conread position: 29-243
Cow position: chr5:45699677-45699889 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 40-235
Cow position: chr5:32733835-32733643 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 145
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 15, 0

Conread position: 40-243
Cow position: chr5:34202359-34202555 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 159
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 156, 5

Conread position: 50-240
Cow position: chr5:41551506-41551318 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 149
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 112, 0

Conread position: 51-235
Cow position: chr5:12644457-12644268 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 140
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 57, 0

Conread position: 60-243
Cow position: chr5:12185086-12185269 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 142
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 7, 174

Conread position: 63-243
Cow position: chr5:31102163-31101988 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 139
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 90, 0

Conread position: 107-243
Cow position: chr5:54932744-54932609 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 103
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 126, 0

Conread position: 129-243
Cow position: chr5:46659224-46659333 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 33, 0

Show alignments to all cow chromosomes.