Cow genome map

Conread name: rmgp011_m12.y1

Conread position: 1-159
Cow position: chr6:734678-734835 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 113
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 25, 0

Conread position: 1-196
Cow position: chr6:2111451-2111252 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 147
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 28, 0

Conread position: 1-232
Cow position: chr6:3889976-3889748 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 174
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 20, 0

Conread position: 1-241
Cow position: chr6:64713061-64713297 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 174
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 21, 0

Conread position: 1-241
Cow position: chr6:64714628-64714864 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 174
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 21, 0

Conread position: 1-242
Cow position: chr6:28274494-28274737 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 176
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 33, 228

Conread position: 1-243
Cow position: chr6:52006-51766 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 1-243
Cow position: chr6:2554213-2554458 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 175
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 18, 236

Conread position: 1-243
Cow position: chr6:3278439-3278200 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 1-243
Cow position: chr6:11278182-11277945 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 179
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 25, 42

Conread position: 1-243
Cow position: chr6:20561598-20561359 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 177
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 20, 0

Conread position: 1-243
Cow position: chr6:27468769-27469009 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 179
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 13, 0

Conread position: 1-243
Cow position: chr6:27530493-27530248 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 180
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 21, 236

Conread position: 1-243
Cow position: chr6:29311005-29311245 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 178
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 49, 20

Conread position: 1-243
Cow position: chr6:30275673-30275432 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 172
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 29, 97

Conread position: 1-243
Cow position: chr6:30478610-30478848 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 182
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 21, 0

Conread position: 1-243
Cow position: chr6:34893496-34893259 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 173
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 20, 0

Conread position: 1-243
Cow position: chr6:36525556-36525793 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 179
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 20, 0

Conread position: 1-243
Cow position: chr6:44151040-44150807 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 171
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 27, 37

Conread position: 1-243
Cow position: chr6:47043922-47043681 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 182
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 29, 102

Conread position: 1-243
Cow position: chr6:55544816-55544576 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 176
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 20, 0

Conread position: 1-243
Cow position: chr6:65880371-65880617 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 183
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 49, 20

Conread position: 2-234
Cow position: chr6:66194464-66194233 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 164
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 223, 145

Conread position: 2-243
Cow position: chr6:65908945-65909177 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 172
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 17, 0

Conread position: 3-242
Cow position: chr6:21686405-21686645 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 181
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 26, 62

Conread position: 4-242
Cow position: chr6:15141665-15141425 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 175
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 30, 232

Conread position: 4-243
Cow position: chr6:66231330-66231564 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 180
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 24, 32

Conread position: 5-243
Cow position: chr6:7180153-7179921 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 167
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 26, 153

Conread position: 5-243
Cow position: chr6:24238557-24238798 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 182
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 24, 232

Conread position: 11-236
Cow position: chr6:63198616-63198395 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 151
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 24, 11

Conread position: 11-243
Cow position: chr6:8201253-8201483 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 12-243
Cow position: chr6:65841109-65841345 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 169
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 9, 0

Conread position: 13-242
Cow position: chr6:17045584-17045814 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 227

Conread position: 13-243
Cow position: chr6:1823725-1823496 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 170
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 9, 141

Conread position: 13-243
Cow position: chr6:3488871-3488650 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 162
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 9, 172

Conread position: 13-243
Cow position: chr6:5951714-5951486 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 169
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 8, 30

Conread position: 13-243
Cow position: chr6:15281022-15280792 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 170
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 9, 221

Conread position: 14-232
Cow position: chr6:42723398-42723182 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 166
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 18, 183

Conread position: 15-243
Cow position: chr6:2401766-2402001 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 171
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 18, 9

Conread position: 19-243
Cow position: chr6:28106237-28106017 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 173
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 149, 0

Conread position: 19-243
Cow position: chr6:39907684-39907900 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 165
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 120, 0

Conread position: 19-243
Cow position: chr6:65007373-65007594 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 170
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 154, 58

Conread position: 19-243
Cow position: chr6:68362787-68362565 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 0

Conread position: 21-196
Cow position: chr6:50497920-50497748 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 133
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 76, 0

Conread position: 21-232
Cow position: chr6:52735934-52736142 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 164
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 118, 0

Conread position: 21-243
Cow position: chr6:1384312-1384093 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 146
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 150, 0

Conread position: 21-243
Cow position: chr6:6476920-6476704 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 173
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 52, 0

Conread position: 21-243
Cow position: chr6:6566142-6566363 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 166
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 212, 0

Conread position: 21-243
Cow position: chr6:10054154-10054365 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 168
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 143, 73

Conread position: 21-243
Cow position: chr6:12093323-12093106 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 169
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 65, 0

Conread position: 21-243
Cow position: chr6:21971207-21971424 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 170
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 77, 0

Conread position: 21-243
Cow position: chr6:38231809-38232026 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 174
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 202, 138

Conread position: 21-243
Cow position: chr6:39437173-39437394 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 170
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 0

Conread position: 21-243
Cow position: chr6:65900379-65900159 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 170
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 55, 0

Conread position: 22-243
Cow position: chr6:19453464-19453679 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 170
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 63, 0

Conread position: 22-243
Cow position: chr6:35877183-35876966 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 159
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 67, 0

Conread position: 22-243
Cow position: chr6:59919743-59919528 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 164
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 163, 112

Conread position: 24-243
Cow position: chr6:33388351-33388588 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 174
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 18, 0

Conread position: 25-243
Cow position: chr6:43795177-43794958 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 159
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 33, 43

Conread position: 26-243
Cow position: chr6:331944-331715 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 162
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 40, 220

Conread position: 26-243
Cow position: chr6:1405697-1405486 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 162
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 112, 0

Conread position: 26-243
Cow position: chr6:2374246-2374457 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 160
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 135, 0

Conread position: 26-243
Cow position: chr6:6935590-6935374 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 162
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 207, 0

Conread position: 26-243
Cow position: chr6:7141930-7141721 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 165
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 19, 0

Conread position: 26-243
Cow position: chr6:13103594-13103809 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 164
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 74, 0

Conread position: 26-243
Cow position: chr6:17598747-17598526 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 162
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 138, 212

Conread position: 26-243
Cow position: chr6:26671330-26671110 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 168
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 34, 126

Conread position: 26-243
Cow position: chr6:27169111-27169327 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 162
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 207, 0

Conread position: 26-243
Cow position: chr6:28062883-28063092 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 160
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 131, 0

Conread position: 26-243
Cow position: chr6:28491979-28491763 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 162
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 207, 0

Conread position: 26-243
Cow position: chr6:34126886-34127102 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 160
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 207, 0

Conread position: 26-243
Cow position: chr6:40274794-40275009 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 164
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 121, 0

Conread position: 26-243
Cow position: chr6:41757451-41757235 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 162
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 207, 0

Conread position: 26-243
Cow position: chr6:42564482-42564694 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 147
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 67, 0

Conread position: 26-243
Cow position: chr6:43617250-43617467 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 157
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 108, 208

Conread position: 26-243
Cow position: chr6:44028590-44028801 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 157
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 48, 0

Conread position: 26-243
Cow position: chr6:45671804-45672015 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 161
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 119, 0

Conread position: 26-243
Cow position: chr6:57870469-57870253 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 160
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 207, 0

Conread position: 26-243
Cow position: chr6:65822597-65822376 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 162
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 126, 35

Conread position: 26-243
Cow position: chr6:68026316-68026533 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 160
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 138, 208

Conread position: 28-196
Cow position: chr6:13276096-13276265 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 136, 0

Conread position: 28-236
Cow position: chr6:42926911-42927131 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 169
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 19, 0

Conread position: 28-243
Cow position: chr6:65927482-65927690 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 150
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 108, 0

Conread position: 29-243
Cow position: chr6:701490-701704 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 164
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 27, 205

Conread position: 29-243
Cow position: chr6:33459118-33459336 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 166
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 69, 151

Conread position: 36-196
Cow position: chr6:13318141-13317982 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 127
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 46, 0

Conread position: 36-243
Cow position: chr6:913177-913382 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 158
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 116, 0

Conread position: 37-183
Cow position: chr6:10640338-10640482 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 5, 100

Conread position: 37-235
Cow position: chr6:35421014-35420826 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 142
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 37-243
Cow position: chr6:13943459-13943665 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 157
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 127, 197

Conread position: 39-243
Cow position: chr6:58409360-58409159 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 153
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 108, 0

Conread position: 51-243
Cow position: chr6:8761741-8761550 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 143
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 182, 0

Conread position: 71-232
Cow position: chr6:21836522-21836359 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 15, 63

Conread position: 93-243
Cow position: chr6:13978123-13978273 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 10, 141

Show alignments to all cow chromosomes.