Cow genome map

Conread name: rmgp011_m12.y1

Conread position: 1-158
Cow position: chr7:67425981-67426142 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 118
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 1-229
Cow position: chr7:21242503-21242280 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 175
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 23, 64

Conread position: 1-235
Cow position: chr7:21309820-21310041 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 179
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 21, 68

Conread position: 1-242
Cow position: chr7:39109114-39108878 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 186
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 23, 103

Conread position: 1-243
Cow position: chr7:447028-446793 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 180
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 28, 64

Conread position: 1-243
Cow position: chr7:1373049-1372809 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 180
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 20, 0

Conread position: 1-243
Cow position: chr7:8145637-8145397 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 172
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 20, 0

Conread position: 1-243
Cow position: chr7:13538127-13537887 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 1-243
Cow position: chr7:14139992-14139756 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 174
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 20, 0

Conread position: 1-243
Cow position: chr7:21128053-21127810 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 178
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 25, 233

Conread position: 1-243
Cow position: chr7:21235410-21235171 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 179
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 20, 0

Conread position: 1-243
Cow position: chr7:21985000-21985239 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 178
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 67, 20

Conread position: 1-243
Cow position: chr7:24808868-24808627 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 176
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 225, 20

Conread position: 1-243
Cow position: chr7:27786232-27786472 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 179
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 20, 0

Conread position: 1-243
Cow position: chr7:34148711-34148950 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 175
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 23, 0

Conread position: 1-243
Cow position: chr7:38396827-38397068 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 20

Conread position: 1-243
Cow position: chr7:46902473-46902236 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 1-243
Cow position: chr7:51013574-51013810 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 179
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 7, 148

Conread position: 1-243
Cow position: chr7:53015093-53015334 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 178
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 22, 60

Conread position: 1-243
Cow position: chr7:53990362-53990582 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 181
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 54, 0

Conread position: 1-243
Cow position: chr7:54602450-54602691 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 174
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 149, 20

Conread position: 1-243
Cow position: chr7:63384954-63385196 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 179
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 197, 18

Conread position: 1-243
Cow position: chr7:64242336-64242099 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 175
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 20, 0

Conread position: 2-243
Cow position: chr7:20106940-20106710 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 172
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 21, 96

Conread position: 2-243
Cow position: chr7:20307184-20306950 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 172
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 41, 0

Conread position: 3-157
Cow position: chr7:68779256-68779102 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 3-243
Cow position: chr7:522243-522004 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 61

Conread position: 4-243
Cow position: chr7:20294472-20294712 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 174
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 26, 74

Conread position: 5-243
Cow position: chr7:1736572-1736337 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 175
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 159, 15

Conread position: 5-243
Cow position: chr7:29469469-29469707 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 185
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 24, 31

Conread position: 5-243
Cow position: chr7:34485510-34485750 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 180
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 24, 113

Conread position: 6-222
Cow position: chr7:1400752-1400534 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 162
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 24, 0

Conread position: 6-243
Cow position: chr7:68858486-68858252 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 0

Conread position: 8-196
Cow position: chr7:27587196-27587013 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 130
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 81, 0

Conread position: 8-238
Cow position: chr7:68907217-68907452 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 177
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 147, 231

Conread position: 8-243
Cow position: chr7:59027629-59027858 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 161
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 52, 0

Conread position: 11-210
Cow position: chr7:27143948-27144144 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 150
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 9, 166

Conread position: 11-240
Cow position: chr7:1449104-1449332 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 170
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 136, 128

Conread position: 14-240
Cow position: chr7:62680042-62679817 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 161
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 150, 12

Conread position: 15-231
Cow position: chr7:47050037-47050250 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 161
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 145, 0

Conread position: 15-242
Cow position: chr7:3154395-3154621 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 0

Conread position: 15-243
Cow position: chr7:29371141-29370923 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 173
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 144, 0

Conread position: 15-243
Cow position: chr7:36084947-36085175 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 172
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 18, 9

Conread position: 18-243
Cow position: chr7:51084238-51084464 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 162
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 154, 42

Conread position: 21-167
Cow position: chr7:60857728-60857583 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 109
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 82, 0

Conread position: 21-210
Cow position: chr7:31864481-31864662 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 133
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 34, 0

Conread position: 21-235
Cow position: chr7:39791356-39791571 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 161
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 154, 0

Conread position: 21-235
Cow position: chr7:55538297-55538083 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 164
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 21-242
Cow position: chr7:26890426-26890645 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 0

Conread position: 21-242
Cow position: chr7:63020476-63020692 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 164
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 143, 41

Conread position: 21-243
Cow position: chr7:49290220-49290435 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 163
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 143, 80

Conread position: 21-243
Cow position: chr7:55281178-55280958 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 161
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 29, 121

Conread position: 22-196
Cow position: chr7:41489756-41489929 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 132
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 36, 65

Conread position: 22-211
Cow position: chr7:30156668-30156479 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 151
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 22-243
Cow position: chr7:35297974-35297754 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 0

Conread position: 22-243
Cow position: chr7:48633029-48633246 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 0

Conread position: 22-243
Cow position: chr7:67798475-67798692 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 163
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 37, 0

Conread position: 23-243
Cow position: chr7:35287941-35287717 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 215

Conread position: 24-243
Cow position: chr7:41870305-41870088 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 173
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 9, 74

Conread position: 25-243
Cow position: chr7:20429378-20429171 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 156
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 132, 0

Conread position: 26-210
Cow position: chr7:20529072-20528887 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 135
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 169, 0

Conread position: 26-210
Cow position: chr7:20555321-20555505 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 136
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 169, 64

Conread position: 26-242
Cow position: chr7:25439160-25439369 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 154
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 113, 0

Conread position: 26-243
Cow position: chr7:17248-17032 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 163
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 134, 142

Conread position: 26-243
Cow position: chr7:3235058-3234843 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 164
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 135, 17

Conread position: 26-243
Cow position: chr7:3301529-3301314 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 162
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 101, 0

Conread position: 26-243
Cow position: chr7:6643248-6643032 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 167
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 207, 0

Conread position: 26-243
Cow position: chr7:6720172-6720388 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 164
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 207, 0

Conread position: 26-243
Cow position: chr7:11467103-11466894 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 162
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 113, 0

Conread position: 26-243
Cow position: chr7:20799792-20799591 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 164
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 107, 0

Conread position: 26-243
Cow position: chr7:27102486-27102270 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 161
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 130, 118

Conread position: 26-243
Cow position: chr7:47374621-47374837 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 162
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 207, 0

Conread position: 26-243
Cow position: chr7:61558837-61559053 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 163
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 207, 0

Conread position: 28-240
Cow position: chr7:67416670-67416881 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 159
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 7, 85

Conread position: 28-243
Cow position: chr7:6649027-6648814 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 163
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 117, 0

Conread position: 32-243
Cow position: chr7:19925181-19924971 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 155
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 205, 0

Conread position: 40-243
Cow position: chr7:52120441-52120239 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 143
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 131, 181

Conread position: 44-235
Cow position: chr7:68436404-68436212 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 112
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 13, 113

Conread position: 47-243
Cow position: chr7:1358028-1357825 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 165
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 48-243
Cow position: chr7:38536167-38536364 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 147
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 122, 18

Conread position: 53-243
Cow position: chr7:21976084-21975895 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 153
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 180, 0

Conread position: 62-243
Cow position: chr7:51911691-51911510 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 143
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 95, 172

Conread position: 66-243
Cow position: chr7:26025709-26025876 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 37, 32

Conread position: 66-243
Cow position: chr7:45949483-45949307 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 133
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 159, 0

Conread position: 71-243
Cow position: chr7:11446226-11446396 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 135
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 33, 27

Conread position: 77-243
Cow position: chr7:993912-994075 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 130
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 87, 28

Show alignments to all cow chromosomes.