Cow genome map

Conread name: rmgp011_m12.y1

Conread position: 1-212
Cow position: chr9:10855639-10855850 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 150
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 99, 20

Conread position: 1-230
Cow position: chr9:6051597-6051372 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 164
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 21, 6

Conread position: 1-235
Cow position: chr9:29629307-29629074 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 175
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 20, 0

Conread position: 1-243
Cow position: chr9:1996476-1996240 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 175
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 20, 0

Conread position: 1-243
Cow position: chr9:2170498-2170737 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 175
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 20, 0

Conread position: 1-243
Cow position: chr9:2185388-2185643 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 182
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 27, 221

Conread position: 1-243
Cow position: chr9:5003453-5003693 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 172
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 21, 0

Conread position: 1-243
Cow position: chr9:9012548-9012790 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 176
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 147, 20

Conread position: 1-243
Cow position: chr9:10321261-10321502 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 182
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 62, 20

Conread position: 1-243
Cow position: chr9:18510284-18510044 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 175
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 20, 0

Conread position: 1-243
Cow position: chr9:37163367-37163128 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 181
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 20, 0

Conread position: 1-243
Cow position: chr9:42309122-42309363 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 178
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 32, 20

Conread position: 1-243
Cow position: chr9:42568313-42568553 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 178
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 20, 0

Conread position: 1-243
Cow position: chr9:47001644-47001886 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 182
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 28, 62

Conread position: 1-243
Cow position: chr9:54360049-54360287 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 1-243
Cow position: chr9:59174717-59174477 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 176
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 20, 0

Conread position: 1-243
Cow position: chr9:59535536-59535778 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 182
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 29, 228

Conread position: 2-235
Cow position: chr9:35657413-35657639 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 160
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 101, 38

Conread position: 2-243
Cow position: chr9:3868060-3867824 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 168
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 20, 47

Conread position: 6-243
Cow position: chr9:2500851-2500615 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 176
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 227, 0

Conread position: 8-231
Cow position: chr9:1294374-1294150 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 174
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 15, 203

Conread position: 13-232
Cow position: chr9:16175218-16175438 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 167
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 10, 0

Conread position: 13-235
Cow position: chr9:4531944-4532164 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 165
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 8, 85

Conread position: 13-235
Cow position: chr9:28020997-28021219 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 164
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 8, 185

Conread position: 13-243
Cow position: chr9:418081-417851 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 170
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 9, 225

Conread position: 13-243
Cow position: chr9:3548720-3548490 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 171
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 9, 221

Conread position: 13-243
Cow position: chr9:7002004-7002234 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 175
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 8, 221

Conread position: 13-243
Cow position: chr9:30671821-30672050 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 172
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 220, 0

Conread position: 13-243
Cow position: chr9:51183258-51183028 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 221

Conread position: 13-243
Cow position: chr9:59483214-59482989 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 171
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 9, 46

Conread position: 13-243
Cow position: chr9:60278573-60278342 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 176
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 8, 227

Conread position: 15-243
Cow position: chr9:28626575-28626350 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 171
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 18, 9

Conread position: 18-243
Cow position: chr9:2051916-2052130 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 162
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 118, 0

Conread position: 19-188
Cow position: chr9:8969586-8969417 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 130
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 19-196
Cow position: chr9:34991108-34991283 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 132
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 26, 81

Conread position: 19-232
Cow position: chr9:31020263-31020478 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 164
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 138, 0

Conread position: 19-241
Cow position: chr9:4984237-4984452 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 155
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 104, 52

Conread position: 19-243
Cow position: chr9:3585760-3585982 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 162
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 149, 0

Conread position: 21-235
Cow position: chr9:3567401-3567180 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 171
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 36, 0

Conread position: 21-243
Cow position: chr9:223071-222866 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 158
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 34, 0

Conread position: 21-243
Cow position: chr9:27034169-27034388 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 171
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 6, 0

Conread position: 21-243
Cow position: chr9:31806999-31807220 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 0

Conread position: 21-243
Cow position: chr9:37971748-37971527 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 168
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 212, 0

Conread position: 21-243
Cow position: chr9:59456140-59455919 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 167
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 212, 0

Conread position: 22-243
Cow position: chr9:830092-829878 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 165
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 33, 75

Conread position: 22-243
Cow position: chr9:831966-831752 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 165
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 33, 75

Conread position: 22-243
Cow position: chr9:2199572-2199790 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 159
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 37, 0

Conread position: 26-240
Cow position: chr9:4672071-4672284 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 161
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 207, 0

Conread position: 26-242
Cow position: chr9:3006808-3006596 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 154
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 113, 0

Conread position: 26-242
Cow position: chr9:17064922-17064719 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 152
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 16, 0

Conread position: 26-242
Cow position: chr9:25755739-25755524 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 159
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 207, 0

Conread position: 26-243
Cow position: chr9:164026-163810 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 165
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 130, 121

Conread position: 26-243
Cow position: chr9:781337-781122 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 156
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 131, 0

Conread position: 26-243
Cow position: chr9:1076733-1076519 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 162
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 120, 0

Conread position: 26-243
Cow position: chr9:2488499-2488291 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 160
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 113, 0

Conread position: 26-243
Cow position: chr9:12401710-12401924 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 163
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 121, 0

Conread position: 26-243
Cow position: chr9:16267825-16268040 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 163
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 60, 0

Conread position: 26-243
Cow position: chr9:25483336-25483553 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 165
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 120, 210

Conread position: 26-243
Cow position: chr9:27933558-27933774 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 162
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 207, 0

Conread position: 26-243
Cow position: chr9:31194703-31194487 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 162
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 207, 0

Conread position: 26-243
Cow position: chr9:33834809-33834593 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 165
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 207, 0

Conread position: 26-243
Cow position: chr9:34243134-34242918 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 160
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 207, 0

Conread position: 26-243
Cow position: chr9:45872818-45873032 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 166
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 207, 0

Conread position: 26-243
Cow position: chr9:46626335-46626119 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 162
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 207, 0

Conread position: 26-243
Cow position: chr9:50789035-50789246 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 164
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 113, 0

Conread position: 26-243
Cow position: chr9:59443319-59443535 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 171
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 133, 157

Conread position: 27-243
Cow position: chr9:36723968-36724181 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 162
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 119, 0

Conread position: 29-243
Cow position: chr9:3155511-3155712 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 151
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 143, 0

Conread position: 31-243
Cow position: chr9:28677444-28677654 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 155
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 114, 0

Conread position: 32-243
Cow position: chr9:793034-792830 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 160
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 65, 0

Conread position: 32-243
Cow position: chr9:59510071-59510285 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 151
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 36, 26

Conread position: 36-243
Cow position: chr9:6831070-6830863 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 157
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 121, 203

Conread position: 40-223
Cow position: chr9:10314859-10315042 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 143
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 124, 50

Conread position: 41-242
Cow position: chr9:15071994-15072195 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 157
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 153, 193

Conread position: 41-243
Cow position: chr9:7062627-7062426 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 157
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 192, 0

Conread position: 42-240
Cow position: chr9:18836266-18836461 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 142
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 8, 28

Conread position: 45-240
Cow position: chr9:26712834-26712639 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 141
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 116, 128

Conread position: 46-243
Cow position: chr9:34107235-34107038 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 139
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 118, 188

Conread position: 56-243
Cow position: chr9:651599-651407 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 153
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 91, 76

Conread position: 62-243
Cow position: chr9:1979447-1979626 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 141
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 78, 0

Conread position: 62-243
Cow position: chr9:22650655-22650835 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 138
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 171, 0

Conread position: 66-243
Cow position: chr9:32968244-32968422 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 139
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 37, 169

Conread position: 66-243
Cow position: chr9:60651958-60651784 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 79, 0

Conread position: 67-240
Cow position: chr9:29028724-29028552 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 131
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 166, 0

Conread position: 71-243
Cow position: chr9:1252458-1252287 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 164, 0

Show alignments to all cow chromosomes.