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Cow genome map

           
Conread name:
           
rnbm25b_g22.y1
        

               
Conread position:
               
1-166
               

               
Cow position:
               
chr21:8125803-8125637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
31, 84
               

               
Conread position:
               
1-176
               

               
Cow position:
               
chr21:47465118-47464941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
29, 127
               

               
Conread position:
               
1-179
               

               
Cow position:
               
chr21:40589482-40589301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chr21:34654078-34654263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
94, 27
               

               
Conread position:
               
1-192
               

               
Cow position:
               
chr21:24642523-24642706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
1-193
               

               
Cow position:
               
chr21:977140-976946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
94, 31
               

               
Conread position:
               
1-289
               

               
Cow position:
               
chr21:18289666-18289945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
98, 31
               

               
Conread position:
               
2-147
               

               
Cow position:
               
chr21:17929834-17929688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
34, 40
               

               
Conread position:
               
2-174
               

               
Cow position:
               
chr21:471681-471850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
97, 35
               

               
Conread position:
               
2-175
               

               
Cow position:
               
chr21:29014909-29014734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
28, 18
               

               
Conread position:
               
2-179
               

               
Cow position:
               
chr21:6997944-6998128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
65, 30
               

               
Conread position:
               
2-179
               

               
Cow position:
               
chr21:28244473-28244651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
33, 75
               

               
Conread position:
               
2-179
               

               
Cow position:
               
chr21:28626244-28626418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
35, 79
               

               
Conread position:
               
2-179
               

               
Cow position:
               
chr21:38121103-38121282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
2-180
               

               
Cow position:
               
chr21:17183927-17184099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
96, 35
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chr21:19513869-19514036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
67, 39
               

               
Conread position:
               
2-187
               

               
Cow position:
               
chr21:742289-742466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
21, 41
               

               
Conread position:
               
2-187
               

               
Cow position:
               
chr21:45971167-45970985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
2-189
               

               
Cow position:
               
chr21:3763735-3763554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
100, 16
               

               
Conread position:
               
2-189
               

               
Cow position:
               
chr21:44565716-44565531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
33, 93
               

               
Conread position:
               
2-191
               

               
Cow position:
               
chr21:3361009-3360822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
93, 6
               

               
Conread position:
               
2-191
               

               
Cow position:
               
chr21:17642980-17642793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
93, 36
               

               
Conread position:
               
2-195
               

               
Cow position:
               
chr21:2657812-2658006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
38, 18
               

               
Conread position:
               
2-195
               

               
Cow position:
               
chr21:40168623-40168429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
36, 154
               

               
Conread position:
               
2-195
               

               
Cow position:
               
chr21:44251839-44251646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
97, 17
               

               
Conread position:
               
2-196
               

               
Cow position:
               
chr21:1511295-1511487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
10, 92
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr21:42841596-42841316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
33, 174
               

               
Conread position:
               
2-292
               

               
Cow position:
               
chr21:868921-868649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
30, 8
               

               
Conread position:
               
2-295
               

               
Cow position:
               
chr21:44671755-44672047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
93, 30
               

               
Conread position:
               
2-301
               

               
Cow position:
               
chr21:33350744-33351050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
30, 51
               

               
Conread position:
               
2-307
               

               
Cow position:
               
chr21:10514808-10515121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
34, 23
               

               
Conread position:
               
2-312
               

               
Cow position:
               
chr21:30256266-30255963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
93, 110
               

               
Conread position:
               
3-175
               

               
Cow position:
               
chr21:40769295-40769470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
33, 137
               

               
Conread position:
               
4-148
               

               
Cow position:
               
chr21:15611148-15611290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
31, 85
               

               
Conread position:
               
4-148
               

               
Cow position:
               
chr21:29405209-29405071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
91, 29
               

               
Conread position:
               
4-156
               

               
Cow position:
               
chr21:10089986-10089834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
91, 118
               

               
Conread position:
               
4-164
               

               
Cow position:
               
chr21:23460146-23460299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
4-167
               

               
Cow position:
               
chr21:21907423-21907265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
4-172
               

               
Cow position:
               
chr21:8235548-8235388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
4-172
               

               
Cow position:
               
chr21:27406252-27406070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
4-172
               

               
Cow position:
               
chr21:40192295-40192131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
91, 25
               

               
Conread position:
               
4-175
               

               
Cow position:
               
chr21:12461964-12461789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
4-175
               

               
Cow position:
               
chr21:28989614-28989790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
39, 119
               

               
Conread position:
               
4-176
               

               
Cow position:
               
chr21:6758353-6758521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
4-177
               

               
Cow position:
               
chr21:15584414-15584240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
4-178
               

               
Cow position:
               
chr21:10538246-10538075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
95, 25
               

               
Conread position:
               
4-178
               

               
Cow position:
               
chr21:21077614-21077780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
156, 16
               

               
Conread position:
               
4-178
               

               
Cow position:
               
chr21:21169486-21169316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
4-179
               

               
Cow position:
               
chr21:10001081-10001256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
106, 28
               

               
Conread position:
               
4-179
               

               
Cow position:
               
chr21:28810257-28810081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
47, 37
               

               
Conread position:
               
4-180
               

               
Cow position:
               
chr21:395876-396049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
4-180
               

               
Cow position:
               
chr21:20160684-20160858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
94, 28
               

               
Conread position:
               
4-180
               

               
Cow position:
               
chr21:28733908-28733731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
34, 95
               

               
Conread position:
               
4-180
               

               
Cow position:
               
chr21:32339731-32339558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
95, 42
               

               
Conread position:
               
4-180
               

               
Cow position:
               
chr21:41918240-41918060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
30, 113
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chr21:8206774-8206953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
29, 128
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chr21:13395602-13395781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
91, 25
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chr21:14760578-14760748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
32, 38
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chr21:15976639-15976815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
47, 36
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chr21:18064908-18064735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
18, 35
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chr21:23672756-23672928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chr21:29978754-29978577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
95, 28
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chr21:33563016-33563186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chr21:36508247-36508417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chr21:38449441-38449266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
31, 95
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chr21:44861106-44860935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
7, 37
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chr21:45921052-45920877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
91, 25
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chr21:47713999-47713827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
4-181
               

               
Cow position:
               
chr21:47764109-47763935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
91, 21
               

               
Conread position:
               
4-183
               

               
Cow position:
               
chr21:15544212-15544043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
175, 28
               

               
Conread position:
               
4-183
               

               
Cow position:
               
chr21:37345091-37344916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
94, 25
               

               
Conread position:
               
4-185
               

               
Cow position:
               
chr21:16152442-16152628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
4-187
               

               
Cow position:
               
chr21:3585361-3585178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
91, 6
               

               
Conread position:
               
4-187
               

               
Cow position:
               
chr21:42135614-42135427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
4-187
               

               
Cow position:
               
chr21:42501045-42501242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
4-189
               

               
Cow position:
               
chr21:7377921-7377735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
4-189
               

               
Cow position:
               
chr21:7394388-7394566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
18, 90
               

               
Conread position:
               
4-189
               

               
Cow position:
               
chr21:7768440-7768629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
4-189
               

               
Cow position:
               
chr21:8546012-8545832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
4-189
               

               
Cow position:
               
chr21:17193747-17193560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
34, 171
               

               
Conread position:
               
4-189
               

               
Cow position:
               
chr21:19258830-19259010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
175, 25
               

               
Conread position:
               
4-189
               

               
Cow position:
               
chr21:41621130-41621316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
4-189
               

               
Cow position:
               
chr21:45329939-45329760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
27, 21
               

               
Conread position:
               
4-191
               

               
Cow position:
               
chr21:18568634-18568443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
52, 37
               

               
Conread position:
               
4-192
               

               
Cow position:
               
chr21:957678-957864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
4-193
               

               
Cow position:
               
chr21:13128092-13127904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
28, 78
               

               
Conread position:
               
4-193
               

               
Cow position:
               
chr21:17890309-17890497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
99, 21
               

               
Conread position:
               
4-193
               

               
Cow position:
               
chr21:28919518-28919333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
91, 126
               

               
Conread position:
               
4-193
               

               
Cow position:
               
chr21:42414095-42413901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
4-195
               

               
Cow position:
               
chr21:10004881-10004689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
34, 106
               

               
Conread position:
               
4-195
               

               
Cow position:
               
chr21:10264038-10264229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
36, 25
               

               
Conread position:
               
4-195
               

               
Cow position:
               
chr21:10410226-10410419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
45, 105
               

               
Conread position:
               
4-195
               

               
Cow position:
               
chr21:11360043-11360223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
94, 25
               

               
Conread position:
               
4-196
               

               
Cow position:
               
chr21:10118565-10118764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
95, 57
               

               
Conread position:
               
4-196
               

               
Cow position:
               
chr21:31159409-31159595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
4-201
               

               
Cow position:
               
chr21:13089464-13089271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
31, 16
               

               
Conread position:
               
4-202
               

               
Cow position:
               
chr21:30835369-30835567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
33, 76
               

               
Conread position:
               
4-206
               

               
Cow position:
               
chr21:23322072-23321870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
92, 28
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr21:45473748-45473548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
91, 16
               

               
Conread position:
               
4-209
               

               
Cow position:
               
chr21:7581896-7581694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
93, 24
               

               
Conread position:
               
4-214
               

               
Cow position:
               
chr21:1591558-1591765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
18, 142
               

               
Conread position:
               
4-224
               

               
Cow position:
               
chr21:22718778-22718559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
26, 16
               

               
Conread position:
               
4-244
               

               
Cow position:
               
chr21:3818216-3818453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
91, 28
               

               
Conread position:
               
4-272
               

               
Cow position:
               
chr21:28237706-28237448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
42, 99
               

               
Conread position:
               
4-280
               

               
Cow position:
               
chr21:12739085-12739347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
95, 137
               

               
Conread position:
               
4-280
               

               
Cow position:
               
chr21:28924116-28924383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
97, 28
               

               
Conread position:
               
4-280
               

               
Cow position:
               
chr21:36795606-36795883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 206
               

               
Conread position:
               
4-287
               

               
Cow position:
               
chr21:42384516-42384802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 28
               

               
Conread position:
               
4-290
               

               
Cow position:
               
chr21:39888742-39888457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
91, 27
               

               
Conread position:
               
4-295
               

               
Cow position:
               
chr21:11114716-11114994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
24, 45
               

               
Conread position:
               
4-295
               

               
Cow position:
               
chr21:13585048-13584778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
91, 33
               

               
Conread position:
               
4-295
               

               
Cow position:
               
chr21:46132581-46132868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
92, 25
               

               
Conread position:
               
4-303
               

               
Cow position:
               
chr21:33727-34015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 21
               

               
Conread position:
               
4-303
               

               
Cow position:
               
chr21:26244924-26245213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
91, 25
               

               
Conread position:
               
4-304
               

               
Cow position:
               
chr21:2260355-2260065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
95, 6
               

               
Conread position:
               
4-305
               

               
Cow position:
               
chr21:8431096-8430795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
34, 205
               

               
Conread position:
               
4-309
               

               
Cow position:
               
chr21:36909941-36910240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 36
               

               
Conread position:
               
4-312
               

               
Cow position:
               
chr21:3400828-3400516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 10
               

               
Conread position:
               
4-312
               

               
Cow position:
               
chr21:47363732-47363433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
32, 171
               

               
Conread position:
               
5-181
               

               
Cow position:
               
chr21:6051513-6051686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
90, 24
               

               
Conread position:
               
5-190
               

               
Cow position:
               
chr21:23586887-23587073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
46, 149
               

               
Conread position:
               
5-195
               

               
Cow position:
               
chr21:37706412-37706216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
31, 9
               

               
Conread position:
               
5-224
               

               
Cow position:
               
chr21:18155560-18155340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
35, 15
               

               
Conread position:
               
5-280
               

               
Cow position:
               
chr21:30157802-30157526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
17, 164
               

               
Conread position:
               
5-305
               

               
Cow position:
               
chr21:40432456-40432746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
94, 27
               

               
Conread position:
               
5-311
               

               
Cow position:
               
chr21:41974368-41974080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
6-144
               

               
Cow position:
               
chr21:46599367-46599507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
6-160
               

               
Cow position:
               
chr21:20183079-20183233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
89, 32
               

               
Conread position:
               
6-167
               

               
Cow position:
               
chr21:44515271-44515441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
6-173
               

               
Cow position:
               
chr21:10561576-10561409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
45, 35
               

               
Conread position:
               
6-178
               

               
Cow position:
               
chr21:37299466-37299642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
6-179
               

               
Cow position:
               
chr21:6713518-6713342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
6-179
               

               
Cow position:
               
chr21:42209623-42209448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
6-185
               

               
Cow position:
               
chr21:31691490-31691669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
30, 79
               

               
Conread position:
               
6-186
               

               
Cow position:
               
chr21:724878-724695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
23, 169
               

               
Conread position:
               
6-188
               

               
Cow position:
               
chr21:8426454-8426635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
89, 35
               

               
Conread position:
               
6-189
               

               
Cow position:
               
chr21:41287787-41287602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
6-191
               

               
Cow position:
               
chr21:71593-71780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
32, 136
               

               
Conread position:
               
6-191
               

               
Cow position:
               
chr21:643332-643517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
89, 46
               

               
Conread position:
               
6-191
               

               
Cow position:
               
chr21:829204-829016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
29, 143
               

               
Conread position:
               
6-191
               

               
Cow position:
               
chr21:28030296-28030481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
6-194
               

               
Cow position:
               
chr21:11740113-11739924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
28, 18
               

               
Conread position:
               
6-195
               

               
Cow position:
               
chr21:39319406-39319213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
6-196
               

               
Cow position:
               
chr21:641594-641785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
25, 14
               

               
Conread position:
               
6-197
               

               
Cow position:
               
chr21:29069321-29069127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
6-200
               

               
Cow position:
               
chr21:9990518-9990712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
90, 48
               

               
Conread position:
               
6-207
               

               
Cow position:
               
chr21:8349336-8349537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
22, 94
               

               
Conread position:
               
6-276
               

               
Cow position:
               
chr21:29014554-29014282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
37, 177
               

               
Conread position:
               
6-284
               

               
Cow position:
               
chr21:30980570-30980296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
89, 98
               

               
Conread position:
               
6-298
               

               
Cow position:
               
chr21:44825883-44825599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
31, 188
               

               
Conread position:
               
6-306
               

               
Cow position:
               
chr21:38918211-38918488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
283, 77
               

               
Conread position:
               
6-311
               

               
Cow position:
               
chr21:5392530-5392215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
32, 164
               

               
Conread position:
               
7-181
               

               
Cow position:
               
chr21:41046813-41046989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
28, 82
               

               
Conread position:
               
7-191
               

               
Cow position:
               
chr21:27521323-27521147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
91, 34
               

               
Conread position:
               
7-195
               

               
Cow position:
               
chr21:734605-734786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
7-195
               

               
Cow position:
               
chr21:24858322-24858512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
40, 134
               

               
Conread position:
               
7-285
               

               
Cow position:
               
chr21:46264180-46264455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
88, 56
               

               
Conread position:
               
8-166
               

               
Cow position:
               
chr21:12801742-12801579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
8-167
               

               
Cow position:
               
chr21:12104374-12104535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
8-179
               

               
Cow position:
               
chr21:33982796-33982628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
168, 31
               

               
Conread position:
               
8-180
               

               
Cow position:
               
chr21:7583856-7584032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
35, 151
               

               
Conread position:
               
8-182
               

               
Cow position:
               
chr21:4399813-4399987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
35, 41
               

               
Conread position:
               
8-187
               

               
Cow position:
               
chr21:42007453-42007273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
30, 67
               

               
Conread position:
               
8-191
               

               
Cow position:
               
chr21:30222353-30222538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
8-227
               

               
Cow position:
               
chr21:19360167-19359946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
18, 33
               

               
Conread position:
               
8-298
               

               
Cow position:
               
chr21:13365350-13365642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 85
               

               
Conread position:
               
9-300
               

               
Cow position:
               
chr21:23535723-23535992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
93, 11
               

               
Conread position:
               
10-177
               

               
Cow position:
               
chr21:6624170-6624335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
89, 28
               

               
Conread position:
               
10-179
               

               
Cow position:
               
chr21:4281861-4281699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
88, 29
               

               
Conread position:
               
10-192
               

               
Cow position:
               
chr21:23568231-23568422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
10-303
               

               
Cow position:
               
chr21:37297073-37296785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
54, 31
               

               
Conread position:
               
11-178
               

               
Cow position:
               
chr21:25764646-25764815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
24, 119
               

               
Conread position:
               
11-187
               

               
Cow position:
               
chr21:44214137-44214315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
11-284
               

               
Cow position:
               
chr21:27569158-27568896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
20, 82
               

               
Conread position:
               
13-181
               

               
Cow position:
               
chr21:38900791-38900955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
19, 34
               

               
Conread position:
               
13-190
               

               
Cow position:
               
chr21:41590552-41590373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
13-191
               

               
Cow position:
               
chr21:43259236-43259412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
82, 24
               

               
Conread position:
               
18-180
               

               
Cow position:
               
chr21:37838048-37837884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
19-287
               

               
Cow position:
               
chr21:20213758-20213505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
31, 154
               

               
Conread position:
               
20-172
               

               
Cow position:
               
chr21:7823383-7823538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
41, 11
               

               
Conread position:
               
20-201
               

               
Cow position:
               
chr21:712962-713146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
21-181
               

               
Cow position:
               
chr21:10151825-10151988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
21-191
               

               
Cow position:
               
chr21:11644945-11644772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
21-197
               

               
Cow position:
               
chr21:29485004-29485177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
22-175
               

               
Cow position:
               
chr21:5898377-5898225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
73, 9
               

               
Conread position:
               
22-178
               

               
Cow position:
               
chr21:27145968-27145811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
76, 21
               

               
Conread position:
               
22-179
               

               
Cow position:
               
chr21:49700012-49699859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
76, 24
               

               
Conread position:
               
22-279
               

               
Cow position:
               
chr21:42463665-42463411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
137, 71
               

               
Conread position:
               
25-177
               

               
Cow position:
               
chr21:17062950-17063101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
148, 73
               

               
Conread position:
               
25-272
               

               
Cow position:
               
chr21:11057852-11057608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
26-193
               

               
Cow position:
               
chr21:24797684-24797849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
28-191
               

               
Cow position:
               
chr21:17252948-17252783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
141, 10
               

               
Conread position:
               
28-195
               

               
Cow position:
               
chr21:17265973-17265803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
7, 135
               

               
Conread position:
               
28-198
               

               
Cow position:
               
chr21:46809742-46809566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
28-280
               

               
Cow position:
               
chr21:42562661-42562908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
188, 38
               

               
Conread position:
               
29-179
               

               
Cow position:
               
chr21:40475530-40475679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
69, 14
               

               
Conread position:
               
29-187
               

               
Cow position:
               
chr21:32559335-32559176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
29-195
               

               
Cow position:
               
chr21:12310509-12310669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
70, 10
               

               
Conread position:
               
29-195
               

               
Cow position:
               
chr21:27677511-27677677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
7, 78
               

               
Conread position:
               
29-199
               

               
Cow position:
               
chr21:43692847-43693021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
70, 13
               

               
Conread position:
               
29-200
               

               
Cow position:
               
chr21:7681129-7681300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
66, 110
               

               
Conread position:
               
29-304
               

               
Cow position:
               
chr21:36682354-36682608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
7, 180
               

               
Conread position:
               
30-312
               

               
Cow position:
               
chr21:30250171-30249886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
10, 61
               

               
Conread position:
               
31-189
               

               
Cow position:
               
chr21:8213246-8213092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
31-201
               

               
Cow position:
               
chr21:44592177-44592007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
67, 141
               

               
Conread position:
               
32-217
               

               
Cow position:
               
chr21:30119727-30119915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
32-298
               

               
Cow position:
               
chr21:41610200-41610457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
67, 171
               

               
Conread position:
               
32-307
               

               
Cow position:
               
chr21:46470219-46470507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
142, 66
               

               
Conread position:
               
33-180
               

               
Cow position:
               
chr21:25344895-25345043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
33-181
               

               
Cow position:
               
chr21:46451918-46451771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
58, 35
               

               
Conread position:
               
33-187
               

               
Cow position:
               
chr21:20318547-20318699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
33-284
               

               
Cow position:
               
chr21:9418121-9417881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
196, 65
               

               
Conread position:
               
33-308
               

               
Cow position:
               
chr21:32297485-32297220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
58, 145
               

               
Conread position:
               
34-179
               

               
Cow position:
               
chr21:16498554-16498697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
34-179
               

               
Cow position:
               
chr21:37928685-37928830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
61, 15
               

               
Conread position:
               
34-181
               

               
Cow position:
               
chr21:25383059-25383209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
34-189
               

               
Cow position:
               
chr21:30592269-30592118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
35-183
               

               
Cow position:
               
chr21:5342058-5341909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
35-188
               

               
Cow position:
               
chr21:31279292-31279446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
36-182
               

               
Cow position:
               
chr21:7221303-7221156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
65, 134
               

               
Conread position:
               
36-185
               

               
Cow position:
               
chr21:22939804-22939957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
37-181
               

               
Cow position:
               
chr21:40291708-40291565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
58, 49
               

               
Conread position:
               
37-185
               

               
Cow position:
               
chr21:19868916-19868768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
60, 15
               

               
Conread position:
               
37-191
               

               
Cow position:
               
chr21:39393786-39393942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
38-297
               

               
Cow position:
               
chr21:13163898-13164155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
60, 215
               

               
Conread position:
               
39-194
               

               
Cow position:
               
chr21:11779496-11779345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
62, 36
               

               
Conread position:
               
42-179
               

               
Cow position:
               
chr21:13225758-13225896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
45-179
               

               
Cow position:
               
chr21:802271-802136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
45-180
               

               
Cow position:
               
chr21:18341264-18341401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
47-181
               

               
Cow position:
               
chr21:40059076-40059213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
48-189
               

               
Cow position:
               
chr21:30938623-30938475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
48-284
               

               
Cow position:
               
chr21:1562493-1562267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
44, 134
               

               
Conread position:
               
49-272
               

               
Cow position:
               
chr21:8978499-8978720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
50-167
               

               
Cow position:
               
chr21:35647777-35647659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
50-174
               

               
Cow position:
               
chr21:36763112-36763237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
50-175
               

               
Cow position:
               
chr21:6736138-6736012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
50-180
               

               
Cow position:
               
chr21:82118-82249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
50-181
               

               
Cow position:
               
chr21:25014975-25014850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
50-272
               

               
Cow position:
               
chr21:14228229-14228009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
45, 162
               

               
Conread position:
               
51-218
               

               
Cow position:
               
chr21:26567725-26567557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
44, 27
               

               
Conread position:
               
51-307
               

               
Cow position:
               
chr21:5486462-5486206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
45, 163
               

               
Conread position:
               
52-179
               

               
Cow position:
               
chr21:8687090-8686962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
54-290
               

               
Cow position:
               
chr21:41450437-41450665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
37, 88
               

               
Conread position:
               
55-277
               

               
Cow position:
               
chr21:265680-265916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
40, 79
               

               
Conread position:
               
56-187
               

               
Cow position:
               
chr21:26735466-26735593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
58-172
               

               
Cow position:
               
chr21:38268003-38267888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
58-196
               

               
Cow position:
               
chr21:48482469-48482332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
58-205
               

               
Cow position:
               
chr21:5405875-5406023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
59-172
               

               
Cow position:
               
chr21:19927204-19927093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
8, 40
               

               
Conread position:
               
59-230
               

               
Cow position:
               
chr21:13043961-13043786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
60-180
               

               
Cow position:
               
chr21:41050950-41051070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
36, 68
               

               
Conread position:
               
63-187
               

               
Cow position:
               
chr21:27810454-27810576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
64-302
               

               
Cow position:
               
chr21:42131290-42131056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
35, 147
               

               
Conread position:
               
66-180
               

               
Cow position:
               
chr21:5214415-5214531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
66-181
               

               
Cow position:
               
chr21:29418637-29418751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
10, 29
               

               
Conread position:
               
66-200
               

               
Cow position:
               
chr21:9346489-9346623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
29, 124
               

               
Conread position:
               
67-179
               

               
Cow position:
               
chr21:28617860-28617969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
67-195
               

               
Cow position:
               
chr21:12200168-12200297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
67-195
               

               
Cow position:
               
chr21:42017535-42017406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
31, 91
               

               
Conread position:
               
68-179
               

               
Cow position:
               
chr21:43336675-43336787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
70-303
               

               
Cow position:
               
chr21:8986093-8986326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
111, 159
               

               
Conread position:
               
71-290
               

               
Cow position:
               
chr21:31992900-31993123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
72-287
               

               
Cow position:
               
chr21:26658909-26658695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
26, 136
               

               
Conread position:
               
77-181
               

               
Cow position:
               
chr21:37361164-37361059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
78-191
               

               
Cow position:
               
chr21:30970014-30970130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
78-198
               

               
Cow position:
               
chr21:15305220-15305099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
79-315
               

               
Cow position:
               
chr21:25159251-25159489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
20, 129
               

               
Conread position:
               
80-278
               

               
Cow position:
               
chr21:40305024-40305227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
15, 176
               

               
Conread position:
               
84-302
               

               
Cow position:
               
chr21:5961862-5962087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
11, 59
               

               
Conread position:
               
86-188
               

               
Cow position:
               
chr21:30205285-30205183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
91-275
               

               
Cow position:
               
chr21:48478805-48478619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
116, 49
               

               
Conread position:
               
94-315
               

               
Cow position:
               
chr21:35569268-35569045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
78, 113
               

               
Conread position:
               
96-290
               

               
Cow position:
               
chr21:47451267-47451453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
73, 12
               

               
Conread position:
               
97-193
               

               
Cow position:
               
chr21:15414095-15413999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
97
               

               
Alignm identity:
               
80
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
98-307
               

               
Cow position:
               
chr21:652477-652270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
87, 143
               

               
Conread position:
               
107-296
               

               
Cow position:
               
chr21:3359293-3359106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
174, 76
               

               
Conread position:
               
110-311
               

               
Cow position:
               
chr21:14674414-14674603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
116-299
               

               
Cow position:
               
chr21:38722322-38722506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
108, 178
               

               
Conread position:
               
117-287
               

               
Cow position:
               
chr21:19211099-19211268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
146-285
               

               
Cow position:
               
chr21:396331-396471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
173-297
               

               
Cow position:
               
chr21:13495966-13496090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
177-285
               

               
Cow position:
               
chr21:29016029-29015927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
179-304
               

               
Cow position:
               
chr21:25628992-25629114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
34, 40
               

               
Conread position:
               
181-302
               

               
Cow position:
               
chr21:10717286-10717167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
213-308
               

               
Cow position:
               
chr21:13656442-13656347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
96
               

               
Alignm identity:
               
80
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.