Cow genome map

Conread name: rnbm38b_e15.y1

Conread position: 12-183
Cow position: chr21:6998222-6998057 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 6, 61

Conread position: 13-170
Cow position: chr21:48242772-48242933 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 118
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 59, 22

Conread position: 13-182
Cow position: chr21:16119883-16120050 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 135
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 56, 95

Conread position: 13-183
Cow position: chr21:30835645-30835473 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 125
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 59, 100

Conread position: 13-183
Cow position: chr21:32339465-32339630 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 123
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 10, 60

Conread position: 14-183
Cow position: chr21:31462835-31462672 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 60, 95

Conread position: 15-167
Cow position: chr21:13488832-13488678 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 114
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 58, 95

Conread position: 15-183
Cow position: chr21:27568882-27569063 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 137
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 54, 0

Conread position: 16-145
Cow position: chr21:29715228-29715357 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 56, 78

Conread position: 16-177
Cow position: chr21:36121506-36121343 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 9, 109

Conread position: 16-187
Cow position: chr21:16498791-16498622 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 132
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 58, 95

Conread position: 16-187
Cow position: chr21:20174585-20174424 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 133
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 58, 17

Conread position: 16-187
Cow position: chr21:34010124-34010290 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 133
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 57, 7

Conread position: 17-178
Cow position: chr21:27521067-27521225 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 55, 31

Conread position: 17-187
Cow position: chr21:641860-641693 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 128
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 10, 87

Conread position: 17-187
Cow position: chr21:41974092-41974272 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 57, 0

Conread position: 18-186
Cow position: chr21:24858592-24858422 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 138
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 18, 94

Conread position: 20-178
Cow position: chr21:28604354-28604206 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 20-180
Cow position: chr21:37495672-37495831 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 132
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 54, 72

Conread position: 20-186
Cow position: chr21:6042061-6041891 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 132
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 53, 0

Conread position: 20-186
Cow position: chr21:9990780-9990617 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 87, 0

Conread position: 22-183
Cow position: chr21:27568164-27568004 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 52, 80

Conread position: 22-185
Cow position: chr21:23673016-23672853 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 132
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 15, 78

Conread position: 22-187
Cow position: chr21:47464849-47465012 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 133
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 51, 90

Conread position: 23-173
Cow position: chr21:9256383-9256544 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 11, 0

Conread position: 23-181
Cow position: chr21:6051774-6051615 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 129
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 34, 80

Conread position: 23-183
Cow position: chr21:82332-82177 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 126
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 12, 57

Conread position: 23-183
Cow position: chr21:5214623-5214458 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 11, 96

Conread position: 23-183
Cow position: chr21:11779269-11779431 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 118
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 51, 149

Conread position: 23-183
Cow position: chr21:30970204-30970045 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 47, 86

Conread position: 23-185
Cow position: chr21:6713255-6713415 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 49, 80

Conread position: 23-186
Cow position: chr21:36508499-36508341 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 122
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 49, 37

Conread position: 23-187
Cow position: chr21:7208505-7208664 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 22, 84

Conread position: 23-187
Cow position: chr21:8506278-8506440 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 128
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 46, 79

Conread position: 23-187
Cow position: chr21:8509166-8509328 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 131
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 46, 79

Conread position: 23-187
Cow position: chr21:25012348-25012188 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 14, 81

Conread position: 23-187
Cow position: chr21:27810664-27810493 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 11, 0

Conread position: 24-161
Cow position: chr21:37014157-37014296 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 105
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 48, 85

Conread position: 24-181
Cow position: chr21:20160947-20160788 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 128
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 12, 39

Conread position: 24-183
Cow position: chr21:868651-868814 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 50, 0

Conread position: 24-183
Cow position: chr21:5465015-5464858 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 119
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 50, 76

Conread position: 24-187
Cow position: chr21:32272197-32272026 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 50, 16

Conread position: 24-187
Cow position: chr21:39845870-39845699 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 49, 0

Conread position: 25-169
Cow position: chr21:10014059-10014207 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 44, 84

Conread position: 25-181
Cow position: chr21:41917972-41918131 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 49, 84

Conread position: 26-187
Cow position: chr21:46599625-46599467 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 122
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 11, 84

Conread position: 28-183
Cow position: chr21:24797919-24797764 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 42, 88

Conread position: 28-184
Cow position: chr21:22209979-22210137 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 42, 100

Conread position: 28-187
Cow position: chr21:24875616-24875459 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 126
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 46, 82

Conread position: 30-187
Cow position: chr21:7460867-7460713 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 44, 72

Conread position: 31-183
Cow position: chr21:43655963-43655812 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 41, 76

Conread position: 32-142
Cow position: chr21:20260037-20260147 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 93
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 37, 65

Conread position: 32-167
Cow position: chr21:37479330-37479467 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 104
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 42, 78

Conread position: 32-179
Cow position: chr21:37480224-37480079 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 42, 79

Conread position: 32-182
Cow position: chr21:29418833-29418679 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 13, 80

Conread position: 32-182
Cow position: chr21:40589220-40589371 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 113
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 42, 77

Conread position: 32-183
Cow position: chr21:36763322-36763171 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 38, 78

Conread position: 32-183
Cow position: chr21:41041208-41041054 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 113
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 42, 96

Conread position: 32-187
Cow position: chr21:45376207-45376054 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 123
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 42, 79

Conread position: 35-172
Cow position: chr21:42341684-42341817 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 39, 67

Conread position: 35-172
Cow position: chr21:46609746-46609883 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 38, 68

Conread position: 35-173
Cow position: chr21:30368331-30368196 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 39, 62

Conread position: 35-178
Cow position: chr21:40820594-40820738 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 34, 74

Conread position: 35-182
Cow position: chr21:18568380-18568528 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 35, 75

Conread position: 35-183
Cow position: chr21:3585107-3585258 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 112
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 35, 75

Conread position: 35-183
Cow position: chr21:10004626-10004776 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 111
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 39, 77

Conread position: 35-183
Cow position: chr21:11353321-11353170 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 113
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 19, 76

Conread position: 35-183
Cow position: chr21:15444825-15444975 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 110
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 37, 75

Conread position: 35-183
Cow position: chr21:27744286-27744135 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 121
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 37, 94

Conread position: 35-183
Cow position: chr21:48482273-48482420 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 37, 62

Conread position: 35-184
Cow position: chr21:13584795-13584952 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 125
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 37, 0

Conread position: 35-185
Cow position: chr21:44825618-44825778 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 35-186
Cow position: chr21:14126529-14126384 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 120
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 39, 68

Conread position: 35-186
Cow position: chr21:30592057-30592202 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 120
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 40, 58

Conread position: 35-186
Cow position: chr21:32297251-32297412 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 35-187
Cow position: chr21:71843-71693 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 39, 75

Conread position: 35-187
Cow position: chr21:15012688-15012545 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 62, 0

Conread position: 35-187
Cow position: chr21:28907292-28907441 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 124
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 39, 53

Conread position: 35-187
Cow position: chr21:34654327-34654179 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 39, 67

Conread position: 35-187
Cow position: chr21:36682583-36682431 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 113
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 72, 32

Conread position: 35-187
Cow position: chr21:41590309-41590459 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 39, 76

Conread position: 35-187
Cow position: chr21:44732786-44732938 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 34, 81

Conread position: 35-187
Cow position: chr21:47719048-47719193 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 121
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 39, 10

Conread position: 36-187
Cow position: chr21:11644710-11644860 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 38, 75

Conread position: 37-183
Cow position: chr21:28030534-28030398 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 33, 0

Conread position: 37-187
Cow position: chr21:742529-742383 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 37, 60

Conread position: 38-187
Cow position: chr21:39394003-39393854 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 16, 74

Conread position: 39-187
Cow position: chr21:11739866-11740013 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 110
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 35, 72

Conread position: 39-187
Cow position: chr21:29069070-29069220 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 112
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 35, 74

Conread position: 42-176
Cow position: chr21:28237449-28237591 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 42-183
Cow position: chr21:31258719-31258576 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 30, 68

Conread position: 42-186
Cow position: chr21:8351044-8351186 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 120
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 31, 69

Conread position: 42-187
Cow position: chr21:40930226-40930369 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 118
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 32, 69

Conread position: 42-187
Cow position: chr21:41287546-41287687 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 118
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 32, 61

Conread position: 42-187
Cow position: chr21:41522163-41522309 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 65, 25

Conread position: 45-187
Cow position: chr21:20163954-20163814 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 33, 64

Conread position: 46-183
Cow position: chr21:7424767-7424904 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 26, 54

Show alignments to all cow chromosomes.