Cow genome map

Conread name: rnje10c_n3.y1

Conread position: 1-422
Cow position: chr17:15118421-15117983 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 292
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 146, 267

Conread position: 1-654
Cow position: chr17:12132411-12133096 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 77

Conread position: 2-262
Cow position: chr17:14232009-14232277 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 184
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 133, 167

Conread position: 2-371
Cow position: chr17:2034096-2033709 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 87

Conread position: 2-373
Cow position: chr17:923225-922837 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 95

Conread position: 2-393
Cow position: chr17:10445757-10445359 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 269
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 152, 56

Conread position: 2-412
Cow position: chr17:3197032-3197454 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 61

Conread position: 2-416
Cow position: chr17:12477466-12477040 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 12

Conread position: 2-420
Cow position: chr17:43227930-43227501 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 157

Conread position: 2-425
Cow position: chr17:33934213-33934659 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 89

Conread position: 2-426
Cow position: chr17:16416487-16416918 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 16

Conread position: 2-443
Cow position: chr17:16217031-16216579 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 306
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 152, 124

Conread position: 2-443
Cow position: chr17:29083768-29083321 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 309
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 103, 95

Conread position: 2-459
Cow position: chr17:16904183-16903709 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 257

Conread position: 2-459
Cow position: chr17:33792684-33792204 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 371

Conread position: 2-469
Cow position: chr17:2201901-2201418 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 95

Conread position: 2-469
Cow position: chr17:6263458-6262977 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 95

Conread position: 2-469
Cow position: chr17:8223307-8222826 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 32

Conread position: 2-469
Cow position: chr17:11083536-11084014 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 87

Conread position: 2-469
Cow position: chr17:18592004-18591543 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 95

Conread position: 2-469
Cow position: chr17:20093565-20094037 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 328
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 103, 16

Conread position: 2-469
Cow position: chr17:21666603-21666125 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 257

Conread position: 2-469
Cow position: chr17:21767495-21767018 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 330
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 146, 84

Conread position: 2-469
Cow position: chr17:24026381-24026862 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 257

Conread position: 2-482
Cow position: chr17:730895-731386 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 76

Conread position: 2-624
Cow position: chr17:36790662-36790010 (view UCSC Genome Browser custom track)
Alignm length: 659
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 95

Conread position: 2-653
Cow position: chr17:18099473-18100164 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 254

Conread position: 2-659
Cow position: chr17:20078077-20078750 (view UCSC Genome Browser custom track)
Alignm length: 701
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 27

Conread position: 2-670
Cow position: chr17:16117877-16118560 (view UCSC Genome Browser custom track)
Alignm length: 701
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 23

Conread position: 2-671
Cow position: chr17:1568615-1569324 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 98

Conread position: 2-671
Cow position: chr17:22773854-22774544 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 27

Conread position: 3-243
Cow position: chr17:38783-38538 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 167
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 119, 21

Conread position: 3-343
Cow position: chr17:31045-30699 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 235
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 104, 94

Conread position: 3-383
Cow position: chr17:997577-997971 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 252

Conread position: 3-422
Cow position: chr17:1970754-1970317 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 94

Conread position: 3-469
Cow position: chr17:4211532-4211051 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 52

Conread position: 4-374
Cow position: chr17:24503109-24502721 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 270
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 101, 93

Conread position: 4-429
Cow position: chr17:8352102-8351653 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 306
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 143, 58

Conread position: 4-460
Cow position: chr17:29472032-29471566 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 28

Conread position: 5-422
Cow position: chr17:20391375-20390940 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 92

Conread position: 5-469
Cow position: chr17:15809589-15809108 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 317
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 100, 92

Conread position: 5-469
Cow position: chr17:16505145-16505626 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 92

Conread position: 5-469
Cow position: chr17:34235650-34236130 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 92

Conread position: 11-422
Cow position: chr17:15093867-15094296 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 86

Conread position: 17-460
Cow position: chr17:6123372-6122912 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 306
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 126, 242

Conread position: 17-469
Cow position: chr17:18777247-18777709 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 80

Conread position: 18-363
Cow position: chr17:31671312-31671675 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 239
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 88, 79

Conread position: 18-364
Cow position: chr17:21182075-21181711 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 240
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 88, 79

Conread position: 18-422
Cow position: chr17:3652139-3652561 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 284
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 88, 79

Conread position: 18-422
Cow position: chr17:5638304-5638722 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 288
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 87, 79

Conread position: 18-422
Cow position: chr17:5805901-5806323 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 79

Conread position: 18-422
Cow position: chr17:6612610-6612188 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 79

Conread position: 18-422
Cow position: chr17:6956227-6955805 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 79

Conread position: 18-422
Cow position: chr17:8993753-8994174 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 79

Conread position: 18-422
Cow position: chr17:15559160-15558738 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 79

Conread position: 18-422
Cow position: chr17:20546725-20546303 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 284
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 89, 79

Conread position: 18-422
Cow position: chr17:21717050-21716628 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 79

Conread position: 18-422
Cow position: chr17:25835005-25834583 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 79

Conread position: 18-422
Cow position: chr17:29824372-29824796 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 359

Conread position: 18-422
Cow position: chr17:31986613-31987034 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 79

Conread position: 18-422
Cow position: chr17:36284855-36284433 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 79

Conread position: 18-422
Cow position: chr17:39823606-39824028 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 359

Conread position: 18-457
Cow position: chr17:13725850-13725396 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 241

Conread position: 18-469
Cow position: chr17:184734-184268 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 29

Conread position: 18-469
Cow position: chr17:2177561-2177101 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 321
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 37, 25

Conread position: 18-469
Cow position: chr17:14212432-14212897 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 315
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 81, 86

Conread position: 18-469
Cow position: chr17:20226189-20225723 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 79

Conread position: 18-469
Cow position: chr17:38992340-38991874 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 315
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 129, 241

Conread position: 18-660
Cow position: chr17:17958184-17957507 (view UCSC Genome Browser custom track)
Alignm length: 682
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 79

Conread position: 18-660
Cow position: chr17:23320832-23321517 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 359

Conread position: 18-660
Cow position: chr17:43471003-43471687 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 79

Conread position: 18-671
Cow position: chr17:148496-147813 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 325

Conread position: 18-671
Cow position: chr17:2265776-2265087 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 359

Conread position: 18-671
Cow position: chr17:22248665-22249359 (view UCSC Genome Browser custom track)
Alignm length: 701
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 25

Conread position: 18-671
Cow position: chr17:27791207-27791881 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 105

Conread position: 21-390
Cow position: chr17:24618360-24617981 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 270
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 127, 64

Conread position: 23-663
Cow position: chr17:29213206-29212534 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 216

Conread position: 24-422
Cow position: chr17:26829162-26829578 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 278
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 82, 73

Conread position: 30-596
Cow position: chr17:254672-254087 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 241

Conread position: 35-332
Cow position: chr17:13716732-13717038 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 224
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 112, 207

Conread position: 35-437
Cow position: chr17:18339905-18340326 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 293
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 50, 56

Conread position: 35-671
Cow position: chr17:15439362-15438685 (view UCSC Genome Browser custom track)
Alignm length: 683
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 62

Conread position: 36-416
Cow position: chr17:13910058-13910441 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 260
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 49, 55

Conread position: 45-422
Cow position: chr17:5671959-5672350 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 267
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 60, 52

Conread position: 62-670
Cow position: chr17:2839556-2838926 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 42

Conread position: 66-416
Cow position: chr17:16320584-16320223 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 239
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 33, 17

Conread position: 67-279
Cow position: chr17:21373567-21373344 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 155
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 80, 183

Conread position: 78-669
Cow position: chr17:20033912-20033333 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 89

Conread position: 158-399
Cow position: chr17:20272133-20272374 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 176
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 100, 83

Conread position: 158-414
Cow position: chr17:11775845-11775589 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 180
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 31, 84

Conread position: 158-421
Cow position: chr17:37701381-37701117 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 185
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 30, 68

Conread position: 158-422
Cow position: chr17:24785623-24785356 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 189
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 22, 86

Conread position: 158-422
Cow position: chr17:37528539-37528806 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 189
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 30, 204

Conread position: 158-469
Cow position: chr17:25739729-25739417 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 86

Conread position: 158-660
Cow position: chr17:14028914-14029442 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 354
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 30, 86

Conread position: 158-671
Cow position: chr17:20084388-20084920 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 64

Conread position: 160-388
Cow position: chr17:40416210-40416438 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 161
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 24, 93

Conread position: 160-460
Cow position: chr17:20091194-20091482 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 219
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 19, 73

Conread position: 160-469
Cow position: chr17:22134626-22134318 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 221
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 28, 84

Conread position: 163-427
Cow position: chr17:20083010-20083268 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 193
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 223, 38

Conread position: 172-422
Cow position: chr17:21771095-21770846 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 176
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 164, 11

Show alignments to all cow chromosomes.