Cow genome map

Conread name: rnje10c_n3.y1

Conread position: 2-245
Cow position: chr19:4304307-4304059 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 178
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 30, 78

Conread position: 2-348
Cow position: chr19:12551269-12551628 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 251

Conread position: 2-352
Cow position: chr19:29071222-29071575 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 247
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 161, 81

Conread position: 2-353
Cow position: chr19:30518566-30518196 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 252
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 103, 95

Conread position: 2-354
Cow position: chr19:4195246-4194898 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 235
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 146, 174

Conread position: 2-366
Cow position: chr19:15068487-15068861 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 263
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 146, 101

Conread position: 2-372
Cow position: chr19:47670943-47670549 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 254
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 103, 95

Conread position: 2-382
Cow position: chr19:451-62 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 271
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 74, 23

Conread position: 2-413
Cow position: chr19:21201078-21200665 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 292
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 146, 88

Conread position: 2-422
Cow position: chr19:12600871-12601309 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 95

Conread position: 2-422
Cow position: chr19:28912354-28911925 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 28

Conread position: 2-427
Cow position: chr19:42647564-42647981 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 295
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 145, 87

Conread position: 2-437
Cow position: chr19:14180168-14180621 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 95

Conread position: 2-443
Cow position: chr19:1581072-1581536 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 307
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 103, 95

Conread position: 2-443
Cow position: chr19:2589017-2588560 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 361

Conread position: 2-460
Cow position: chr19:40883698-40884166 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 98

Conread position: 2-460
Cow position: chr19:55217635-55217163 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 83

Conread position: 2-463
Cow position: chr19:33625400-33624927 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 93

Conread position: 2-469
Cow position: chr19:208329-207850 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 258

Conread position: 2-469
Cow position: chr19:12209098-12209583 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 95

Conread position: 2-469
Cow position: chr19:30237537-30237060 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 95

Conread position: 2-469
Cow position: chr19:34905492-34905977 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 257

Conread position: 2-469
Cow position: chr19:40790525-40791006 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 95

Conread position: 2-660
Cow position: chr19:28794502-28795187 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 56

Conread position: 2-660
Cow position: chr19:39181702-39182408 (view UCSC Genome Browser custom track)
Alignm length: 710
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 380

Conread position: 2-660
Cow position: chr19:40848657-40849359 (view UCSC Genome Browser custom track)
Alignm length: 708
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 256

Conread position: 2-671
Cow position: chr19:33945399-33944689 (view UCSC Genome Browser custom track)
Alignm length: 717
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 95

Conread position: 3-460
Cow position: chr19:42168-41691 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 319
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 116, 94

Conread position: 3-651
Cow position: chr19:5043867-5044538 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 131

Conread position: 4-660
Cow position: chr19:36352100-36351407 (view UCSC Genome Browser custom track)
Alignm length: 701
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 256

Conread position: 5-417
Cow position: chr19:35835416-35835007 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 276
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 67, 53

Conread position: 15-473
Cow position: chr19:28575585-28576053 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 48

Conread position: 18-389
Cow position: chr19:55975053-55975443 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 268
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 22, 16

Conread position: 18-401
Cow position: chr19:5679834-5680235 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 269
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 129, 0

Conread position: 18-422
Cow position: chr19:3086606-3086188 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 79

Conread position: 18-422
Cow position: chr19:10614042-10613623 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 281
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 129, 105

Conread position: 18-422
Cow position: chr19:19500875-19501296 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 108

Conread position: 18-422
Cow position: chr19:20928993-20928571 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 79

Conread position: 18-422
Cow position: chr19:24734954-24734538 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 281
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 89, 79

Conread position: 18-422
Cow position: chr19:33118907-33119329 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 79

Conread position: 18-422
Cow position: chr19:41204410-41204832 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 79

Conread position: 18-422
Cow position: chr19:55843811-55843399 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 288
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 88, 79

Conread position: 18-438
Cow position: chr19:54542177-54542614 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 240

Conread position: 18-469
Cow position: chr19:12652692-12652225 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 79

Conread position: 18-469
Cow position: chr19:28597187-28596726 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 239

Conread position: 18-469
Cow position: chr19:33877233-33876766 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 241

Conread position: 18-469
Cow position: chr19:55163840-55164307 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 79

Conread position: 18-482
Cow position: chr19:164332-164797 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 313
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 89, 79

Conread position: 18-660
Cow position: chr19:30515225-30515895 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 79

Conread position: 18-671
Cow position: chr19:8206202-8206876 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 287

Conread position: 21-422
Cow position: chr19:43149395-43148976 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 274
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 86, 62

Conread position: 21-465
Cow position: chr19:50561874-50561418 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 83

Conread position: 22-429
Cow position: chr19:5778828-5779255 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 276
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 111, 79

Conread position: 22-469
Cow position: chr19:22513054-22512595 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 234

Conread position: 25-370
Cow position: chr19:23383251-23382886 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 247
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 11, 201

Conread position: 35-225
Cow position: chr19:6744754-6744554 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 144
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 107, 42

Conread position: 35-469
Cow position: chr19:14158205-14157758 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 221

Conread position: 35-671
Cow position: chr19:27081614-27082287 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 343

Conread position: 37-441
Cow position: chr19:7472848-7472434 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 296
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 39, 62

Conread position: 63-305
Cow position: chr19:32618090-32617840 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 172
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 35, 42

Conread position: 66-458
Cow position: chr19:541862-542260 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 275
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 39, 31

Conread position: 68-442
Cow position: chr19:19173427-19173034 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 224

Conread position: 77-430
Cow position: chr19:39077191-39076832 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 248
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 71, 177

Conread position: 79-567
Cow position: chr19:41786070-41786571 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 328
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 20, 16

Conread position: 100-351
Cow position: chr19:34655401-34655656 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 183
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 14, 22

Conread position: 103-413
Cow position: chr19:47188371-47188678 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 223
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 45, 16

Conread position: 147-422
Cow position: chr19:28450489-28450217 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 202
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 19, 12

Conread position: 150-382
Cow position: chr19:15842805-15843041 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 163
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 38, 94

Conread position: 158-319
Cow position: chr19:36150439-36150275 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 23, 95

Conread position: 158-343
Cow position: chr19:29365191-29365009 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 135
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 30, 68

Conread position: 158-394
Cow position: chr19:374034-374278 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 167
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 30, 157

Conread position: 158-422
Cow position: chr19:7078918-7078651 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 190
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 30, 203

Conread position: 158-422
Cow position: chr19:19389496-19389229 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 193
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 30, 204

Conread position: 158-422
Cow position: chr19:20611996-20611729 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 190
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 30, 204

Conread position: 158-422
Cow position: chr19:29394004-29393737 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 192
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 27, 86

Conread position: 158-422
Cow position: chr19:30037245-30037512 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 187
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 30, 0

Conread position: 158-422
Cow position: chr19:33528509-33528242 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 188
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 30, 0

Conread position: 158-422
Cow position: chr19:35781539-35781271 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 194
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 27, 205

Conread position: 158-429
Cow position: chr19:23755046-23755312 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 169
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 27, 95

Conread position: 158-441
Cow position: chr19:20403941-20403658 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 68

Conread position: 158-442
Cow position: chr19:30473486-30473764 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 83

Conread position: 158-442
Cow position: chr19:46821510-46821227 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 25

Conread position: 158-455
Cow position: chr19:4389236-4388943 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 214
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 30, 83

Conread position: 158-460
Cow position: chr19:39697136-39696842 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 208
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 95, 65

Conread position: 158-469
Cow position: chr19:435674-435988 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 224
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 30, 86

Conread position: 158-469
Cow position: chr19:2269642-2269951 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 83

Conread position: 158-469
Cow position: chr19:31782232-31781919 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 218
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 30, 204

Conread position: 158-671
Cow position: chr19:16316557-16317087 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 204

Conread position: 158-671
Cow position: chr19:17883602-17883092 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 337
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 16, 85

Conread position: 159-429
Cow position: chr19:39726457-39726194 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 197
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 30, 75

Conread position: 168-649
Cow position: chr19:36189350-36188860 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 76

Conread position: 171-469
Cow position: chr19:405797-405498 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 210
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 17, 191

Conread position: 177-422
Cow position: chr19:6980734-6980971 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 165
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 217, 67

Conread position: 180-428
Cow position: chr19:7610242-7609998 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 177
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 46, 0

Conread position: 183-340
Cow position: chr19:17423805-17423957 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 183-422
Cow position: chr19:44216216-44216454 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 173
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 70, 208

Conread position: 183-425
Cow position: chr19:27612857-27613111 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 190
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 75, 105

Conread position: 183-671
Cow position: chr19:29089379-29088871 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 375

Conread position: 185-358
Cow position: chr19:42297865-42298038 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 122
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 70, 157

Conread position: 186-540
Cow position: chr19:34048477-34048124 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 227
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 72, 55

Conread position: 198-322
Cow position: chr19:6744296-6744172 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 60, 43

Show alignments to all cow chromosomes.