Cow genome map

Conread name: rnje10c_n3.y1

Conread position: 1-663
Cow position:
Alignm length: 714
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 90

Conread position: 2-219
Cow position:
Alignm length: 227
Alignm identity: 158
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 103, 33

Conread position: 2-328
Cow position:
Alignm length: 339
Alignm identity: 223
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 81, 150

Conread position: 2-336
Cow position:
Alignm length: 344
Alignm identity: 220
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 97, 67

Conread position: 2-343
Cow position:
Alignm length: 359
Alignm identity: 243
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 103, 95

Conread position: 2-383
Cow position:
Alignm length: 405
Alignm identity: 270
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 43, 241

Conread position: 2-412
Cow position:
Alignm length: 429
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 255

Conread position: 2-413
Cow position:
Alignm length: 425
Alignm identity: 284
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 22, 33

Conread position: 2-419
Cow position:
Alignm length: 438
Alignm identity: 292
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 103, 41

Conread position: 2-422
Cow position:
Alignm length: 434
Alignm identity: 289
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 146, 238

Conread position: 2-428
Cow position:
Alignm length: 449
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 28

Conread position: 2-429
Cow position:
Alignm length: 449
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 28

Conread position: 2-430
Cow position:
Alignm length: 457
Alignm identity: 306
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 159, 0

Conread position: 2-442
Cow position:
Alignm length: 466
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 95

Conread position: 2-459
Cow position:
Alignm length: 479
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 95

Conread position: 2-460
Cow position:
Alignm length: 479
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 86

Conread position: 2-460
Cow position:
Alignm length: 479
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 256

Conread position: 2-469
Cow position:
Alignm length: 491
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 95

Conread position: 2-469
Cow position:
Alignm length: 489
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 257

Conread position: 2-469
Cow position:
Alignm length: 489
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 95

Conread position: 2-469
Cow position:
Alignm length: 489
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 257

Conread position: 2-469
Cow position:
Alignm length: 490
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 377

Conread position: 2-469
Cow position:
Alignm length: 490
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 42

Conread position: 2-482
Cow position:
Alignm length: 503
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 95

Conread position: 2-482
Cow position:
Alignm length: 503
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 95

Conread position: 2-515
Cow position:
Alignm length: 530
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 49

Conread position: 2-515
Cow position:
Alignm length: 537
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 33

Conread position: 2-660
Cow position:
Alignm length: 680
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 257

Conread position: 2-660
Cow position:
Alignm length: 706
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 257

Conread position: 2-660
Cow position:
Alignm length: 700
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 61

Conread position: 2-660
Cow position:
Alignm length: 705
Alignm identity: 450
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 75, 88

Conread position: 2-668
Cow position:
Alignm length: 692
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 21

Conread position: 2-671
Cow position:
Alignm length: 708
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 259

Conread position: 2-671
Cow position:
Alignm length: 714
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 257

Conread position: 3-437
Cow position:
Alignm length: 461
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 32

Conread position: 3-459
Cow position:
Alignm length: 486
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 248

Conread position: 3-469
Cow position:
Alignm length: 488
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 256

Conread position: 4-458
Cow position:
Alignm length: 478
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 95

Conread position: 4-469
Cow position:
Alignm length: 488
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 93

Conread position: 5-469
Cow position:
Alignm length: 486
Alignm identity: 320
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 101, 92

Conread position: 6-433
Cow position:
Alignm length: 450
Alignm identity: 297
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 77, 67

Conread position: 6-442
Cow position:
Alignm length: 458
Alignm identity: 301
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 86, 98

Conread position: 6-458
Cow position:
Alignm length: 465
Alignm identity: 303
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 93, 245

Conread position: 6-469
Cow position:
Alignm length: 477
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 246

Conread position: 11-422
Cow position:
Alignm length: 433
Alignm identity: 290
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 95, 86

Conread position: 11-660
Cow position:
Alignm length: 689
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 227

Conread position: 17-460
Cow position:
Alignm length: 470
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 58

Conread position: 18-319
Cow position:
Alignm length: 321
Alignm identity: 226
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 81, 86

Conread position: 18-353
Cow position:
Alignm length: 353
Alignm identity: 233
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 81, 11

Conread position: 18-372
Cow position:
Alignm length: 374
Alignm identity: 248
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 88, 79

Conread position: 18-380
Cow position:
Alignm length: 382
Alignm identity: 248
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 129, 79

Conread position: 18-383
Cow position:
Alignm length: 386
Alignm identity: 258
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 129, 241

Conread position: 18-388
Cow position:
Alignm length: 391
Alignm identity: 263
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 87, 71

Conread position: 18-398
Cow position:
Alignm length: 398
Alignm identity: 250
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 129, 238

Conread position: 18-418
Cow position:
Alignm length: 414
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 353

Conread position: 18-418
Cow position:
Alignm length: 421
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 79

Conread position: 18-422
Cow position:
Alignm length: 424
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 359

Conread position: 18-422
Cow position:
Alignm length: 424
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 79

Conread position: 18-422
Cow position:
Alignm length: 424
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 79

Conread position: 18-422
Cow position:
Alignm length: 424
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 79

Conread position: 18-422
Cow position:
Alignm length: 424
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 79

Conread position: 18-422
Cow position:
Alignm length: 425
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 79

Conread position: 18-422
Cow position:
Alignm length: 426
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 79

Conread position: 18-422
Cow position:
Alignm length: 424
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 79

Conread position: 18-422
Cow position:
Alignm length: 426
Alignm identity: 287
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 88, 79

Conread position: 18-428
Cow position:
Alignm length: 430
Alignm identity: 282
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 28, 56

Conread position: 18-459
Cow position:
Alignm length: 465
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 25

Conread position: 18-460
Cow position:
Alignm length: 465
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 242

Conread position: 18-469
Cow position:
Alignm length: 473
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 79

Conread position: 18-469
Cow position:
Alignm length: 468
Alignm identity: 314
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 70, 51

Conread position: 18-469
Cow position:
Alignm length: 475
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 79

Conread position: 18-469
Cow position:
Alignm length: 472
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 238

Conread position: 18-469
Cow position:
Alignm length: 471
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 79

Conread position: 18-476
Cow position:
Alignm length: 480
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 79

Conread position: 18-480
Cow position:
Alignm length: 492
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 79

Conread position: 18-490
Cow position:
Alignm length: 494
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 440

Conread position: 18-671
Cow position:
Alignm length: 704
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 442

Conread position: 18-671
Cow position:
Alignm length: 699
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 440

Conread position: 21-347
Cow position:
Alignm length: 341
Alignm identity: 223
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 126, 200

Conread position: 21-369
Cow position:
Alignm length: 369
Alignm identity: 244
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 86, 76

Conread position: 21-396
Cow position:
Alignm length: 396
Alignm identity: 257
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 86, 76

Conread position: 21-404
Cow position:
Alignm length: 405
Alignm identity: 274
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 127, 67

Conread position: 21-426
Cow position:
Alignm length: 426
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 76

Conread position: 21-427
Cow position:
Alignm length: 425
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 226

Conread position: 21-671
Cow position:
Alignm length: 699
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 76

Conread position: 22-460
Cow position:
Alignm length: 460
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 75

Conread position: 24-469
Cow position:
Alignm length: 466
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 353

Conread position: 25-357
Cow position:
Alignm length: 358
Alignm identity: 238
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 11, 318

Conread position: 27-422
Cow position:
Alignm length: 417
Alignm identity: 281
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 9, 72

Conread position: 35-309
Cow position:
Alignm length: 293
Alignm identity: 211
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 109, 28

Conread position: 35-352
Cow position:
Alignm length: 337
Alignm identity: 232
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 114, 43

Conread position: 35-422
Cow position:
Alignm length: 408
Alignm identity: 275
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 112, 224

Conread position: 35-429
Cow position:
Alignm length: 416
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 90

Conread position: 36-424
Cow position:
Alignm length: 409
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 221

Conread position: 37-422
Cow position:
Alignm length: 413
Alignm identity: 283
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 68, 36

Conread position: 37-425
Cow position:
Alignm length: 407
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 16

Conread position: 39-441
Cow position:
Alignm length: 424
Alignm identity: 288
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 66, 58

Conread position: 101-460
Cow position:
Alignm length: 379
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 103-314
Cow position:
Alignm length: 230
Alignm identity: 162
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 44, 156

Conread position: 103-422
Cow position:
Alignm length: 325
Alignm identity: 229
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 34, 42

Conread position: 149-671
Cow position:
Alignm length: 554
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 15

Conread position: 158-300
Cow position:
Alignm length: 143
Alignm identity: 107
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 65, 0

Conread position: 158-359
Cow position:
Alignm length: 205
Alignm identity: 155
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 74, 57

Conread position: 158-360
Cow position:
Alignm length: 207
Alignm identity: 140
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 30, 86

Conread position: 158-364
Cow position:
Alignm length: 211
Alignm identity: 147
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 30, 177

Conread position: 158-422
Cow position:
Alignm length: 276
Alignm identity: 186
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 30, 0

Conread position: 158-443
Cow position:
Alignm length: 291
Alignm identity: 215
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 30, 60

Conread position: 158-455
Cow position:
Alignm length: 303
Alignm identity: 212
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 30, 204

Conread position: 158-468
Cow position:
Alignm length: 319
Alignm identity: 223
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 31, 128

Conread position: 158-468
Cow position:
Alignm length: 312
Alignm identity: 219
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 263, 83

Conread position: 158-469
Cow position:
Alignm length: 312
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 0

Conread position: 158-469
Cow position:
Alignm length: 318
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 86

Conread position: 158-660
Cow position:
Alignm length: 534
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 204

Conread position: 159-320
Cow position:
Alignm length: 162
Alignm identity: 117
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 79, 0

Conread position: 159-469
Cow position:
Alignm length: 318
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 86

Conread position: 164-428
Cow position:
Alignm length: 280
Alignm identity: 193
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 66, 0

Conread position: 167-422
Cow position:
Alignm length: 261
Alignm identity: 176
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 18, 85

Conread position: 168-422
Cow position:
Alignm length: 258
Alignm identity: 181
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 20, 0

Conread position: 168-422
Cow position:
Alignm length: 259
Alignm identity: 176
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 20, 165

Conread position: 169-422
Cow position:
Alignm length: 258
Alignm identity: 181
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 19, 57

Conread position: 171-422
Cow position:
Alignm length: 256
Alignm identity: 184
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 17, 191

Conread position: 174-597
Cow position:
Alignm length: 446
Alignm identity: 303
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 14, 99

Conread position: 183-460
Cow position:
Alignm length: 283
Alignm identity: 203
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 70, 32

Conread position: 183-460
Cow position:
Alignm length: 280
Alignm identity: 195
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 70, 58

Conread position: 188-422
Cow position:
Alignm length: 235
Alignm identity: 163
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 188-459
Cow position:
Alignm length: 275
Alignm identity: 187
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 13, 63

Show alignments to all cow chromosomes.