Cow genome map

Conread name: rnje10c_n3.y1

Conread position: 1-340
Cow position:
Alignm length: 348
Alignm identity: 234
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 146, 77

Conread position: 1-401
Cow position:
Alignm length: 420
Alignm identity: 243
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 104, 96

Conread position: 1-443
Cow position:
Alignm length: 462
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 239

Conread position: 2-342
Cow position:
Alignm length: 360
Alignm identity: 242
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 80, 256

Conread position: 2-343
Cow position:
Alignm length: 360
Alignm identity: 241
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 143, 61

Conread position: 2-352
Cow position:
Alignm length: 358
Alignm identity: 231
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 103, 93

Conread position: 2-360
Cow position:
Alignm length: 378
Alignm identity: 258
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 146, 95

Conread position: 2-369
Cow position:
Alignm length: 387
Alignm identity: 249
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 146, 48

Conread position: 2-416
Cow position:
Alignm length: 434
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 118

Conread position: 2-416
Cow position:
Alignm length: 434
Alignm identity: 288
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 146, 119

Conread position: 2-417
Cow position:
Alignm length: 432
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 86

Conread position: 2-422
Cow position:
Alignm length: 442
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 256

Conread position: 2-422
Cow position:
Alignm length: 439
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 255

Conread position: 2-437
Cow position:
Alignm length: 457
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 257

Conread position: 2-440
Cow position:
Alignm length: 465
Alignm identity: 307
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 146, 45

Conread position: 2-442
Cow position:
Alignm length: 462
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 266

Conread position: 2-442
Cow position:
Alignm length: 466
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 95

Conread position: 2-442
Cow position:
Alignm length: 468
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 88

Conread position: 2-443
Cow position:
Alignm length: 469
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 0

Conread position: 2-459
Cow position:
Alignm length: 478
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 95

Conread position: 2-459
Cow position:
Alignm length: 479
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 75

Conread position: 2-460
Cow position:
Alignm length: 477
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 84

Conread position: 2-460
Cow position:
Alignm length: 478
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 32

Conread position: 2-469
Cow position:
Alignm length: 489
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 19

Conread position: 2-469
Cow position:
Alignm length: 477
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 98

Conread position: 2-469
Cow position:
Alignm length: 486
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 196

Conread position: 2-469
Cow position:
Alignm length: 489
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 240

Conread position: 2-473
Cow position:
Alignm length: 493
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 257

Conread position: 2-482
Cow position:
Alignm length: 489
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 96

Conread position: 2-482
Cow position:
Alignm length: 502
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 95

Conread position: 2-547
Cow position:
Alignm length: 565
Alignm identity: 366
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 69, 28

Conread position: 2-586
Cow position:
Alignm length: 629
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 366

Conread position: 2-596
Cow position:
Alignm length: 618
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 241

Conread position: 2-643
Cow position:
Alignm length: 673
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 12

Conread position: 2-660
Cow position:
Alignm length: 706
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 257

Conread position: 2-660
Cow position:
Alignm length: 708
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 40

Conread position: 2-660
Cow position:
Alignm length: 698
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 33

Conread position: 2-660
Cow position:
Alignm length: 708
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 95

Conread position: 2-660
Cow position:
Alignm length: 703
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 95

Conread position: 2-671
Cow position:
Alignm length: 725
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 61

Conread position: 2-671
Cow position:
Alignm length: 707
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 76

Conread position: 3-221
Cow position:
Alignm length: 239
Alignm identity: 170
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 144, 0

Conread position: 3-418
Cow position:
Alignm length: 435
Alignm identity: 288
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 130, 66

Conread position: 3-422
Cow position:
Alignm length: 444
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 101

Conread position: 3-460
Cow position:
Alignm length: 476
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 251

Conread position: 3-473
Cow position:
Alignm length: 493
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 94

Conread position: 3-639
Cow position:
Alignm length: 678
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 356

Conread position: 3-660
Cow position:
Alignm length: 701
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 87

Conread position: 4-405
Cow position:
Alignm length: 423
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 93

Conread position: 4-460
Cow position:
Alignm length: 479
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 100

Conread position: 5-422
Cow position:
Alignm length: 439
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 90

Conread position: 5-422
Cow position:
Alignm length: 437
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 372

Conread position: 5-443
Cow position:
Alignm length: 457
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 235

Conread position: 5-469
Cow position:
Alignm length: 486
Alignm identity: 328
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 142, 254

Conread position: 11-377
Cow position:
Alignm length: 384
Alignm identity: 257
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 130, 245

Conread position: 11-417
Cow position:
Alignm length: 427
Alignm identity: 283
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 96, 86

Conread position: 11-417
Cow position:
Alignm length: 427
Alignm identity: 283
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 96, 86

Conread position: 18-328
Cow position:
Alignm length: 330
Alignm identity: 216
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 87, 60

Conread position: 18-377
Cow position:
Alignm length: 379
Alignm identity: 250
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 87, 45

Conread position: 18-380
Cow position:
Alignm length: 383
Alignm identity: 248
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 129, 71

Conread position: 18-422
Cow position:
Alignm length: 425
Alignm identity: 286
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 88, 79

Conread position: 18-422
Cow position:
Alignm length: 424
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 359

Conread position: 18-422
Cow position:
Alignm length: 425
Alignm identity: 284
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 87, 79

Conread position: 18-422
Cow position:
Alignm length: 424
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 79

Conread position: 18-422
Cow position:
Alignm length: 433
Alignm identity: 290
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 58, 368

Conread position: 18-422
Cow position:
Alignm length: 425
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 79

Conread position: 18-422
Cow position:
Alignm length: 425
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 45

Conread position: 18-422
Cow position:
Alignm length: 425
Alignm identity: 286
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 87, 79

Conread position: 18-422
Cow position:
Alignm length: 424
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 79

Conread position: 18-422
Cow position:
Alignm length: 426
Alignm identity: 287
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 89, 79

Conread position: 18-422
Cow position:
Alignm length: 424
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 79

Conread position: 18-422
Cow position:
Alignm length: 424
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 79

Conread position: 18-422
Cow position:
Alignm length: 424
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 79

Conread position: 18-422
Cow position:
Alignm length: 426
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 41

Conread position: 18-460
Cow position:
Alignm length: 464
Alignm identity: 307
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 88, 65

Conread position: 18-460
Cow position:
Alignm length: 464
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 16

Conread position: 18-460
Cow position:
Alignm length: 467
Alignm identity: 306
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 81, 241

Conread position: 18-469
Cow position:
Alignm length: 472
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 358

Conread position: 18-469
Cow position:
Alignm length: 472
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 287

Conread position: 18-469
Cow position:
Alignm length: 473
Alignm identity: 313
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 88, 79

Conread position: 18-476
Cow position:
Alignm length: 481
Alignm identity: 321
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 128, 225

Conread position: 18-480
Cow position:
Alignm length: 488
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 241

Conread position: 18-541
Cow position:
Alignm length: 553
Alignm identity: 360
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 122, 60

Conread position: 18-553
Cow position:
Alignm length: 570
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 16

Conread position: 18-596
Cow position:
Alignm length: 612
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 79

Conread position: 18-651
Cow position:
Alignm length: 657
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 79

Conread position: 18-671
Cow position:
Alignm length: 702
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 241

Conread position: 18-671
Cow position:
Alignm length: 701
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 241

Conread position: 18-671
Cow position:
Alignm length: 700
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 223

Conread position: 19-671
Cow position:
Alignm length: 676
Alignm identity: 416
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 63, 210

Conread position: 20-422
Cow position:
Alignm length: 430
Alignm identity: 280
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 51, 224

Conread position: 21-633
Cow position:
Alignm length: 656
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 242

Conread position: 21-671
Cow position:
Alignm length: 680
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 76

Conread position: 22-353
Cow position:
Alignm length: 341
Alignm identity: 232
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 34, 48

Conread position: 22-413
Cow position:
Alignm length: 412
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 75

Conread position: 22-443
Cow position:
Alignm length: 449
Alignm identity: 306
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 76, 22

Conread position: 22-469
Cow position:
Alignm length: 468
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 355

Conread position: 23-417
Cow position:
Alignm length: 416
Alignm identity: 279
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 72, 81

Conread position: 24-440
Cow position:
Alignm length: 440
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 62

Conread position: 27-429
Cow position:
Alignm length: 431
Alignm identity: 283
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 45, 234

Conread position: 30-469
Cow position:
Alignm length: 456
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 94

Conread position: 30-469
Cow position:
Alignm length: 457
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 94

Conread position: 34-388
Cow position:
Alignm length: 371
Alignm identity: 249
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 114, 222

Conread position: 34-392
Cow position:
Alignm length: 390
Alignm identity: 262
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 114, 29

Conread position: 35-469
Cow position:
Alignm length: 453
Alignm identity: 291
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 112, 337

Conread position: 35-478
Cow position:
Alignm length: 465
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 193

Conread position: 35-663
Cow position:
Alignm length: 667
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 60

Conread position: 37-419
Cow position:
Alignm length: 402
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 204

Conread position: 37-671
Cow position:
Alignm length: 663
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 70

Conread position: 38-651
Cow position:
Alignm length: 645
Alignm identity: 408
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 109, 119

Conread position: 42-639
Cow position:
Alignm length: 638
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 62

Conread position: 45-352
Cow position:
Alignm length: 310
Alignm identity: 204
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 154, 28

Conread position: 60-469
Cow position:
Alignm length: 433
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 37

Conread position: 68-428
Cow position:
Alignm length: 368
Alignm identity: 249
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 46, 76

Conread position: 73-407
Cow position:
Alignm length: 359
Alignm identity: 241
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 75, 0

Conread position: 103-343
Cow position:
Alignm length: 257
Alignm identity: 177
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 44, 154

Conread position: 103-360
Cow position:
Alignm length: 278
Alignm identity: 193
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 45, 156

Conread position: 104-469
Cow position:
Alignm length: 388
Alignm identity: 266
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 44, 153

Conread position: 135-532
Cow position:
Alignm length: 426
Alignm identity: 289
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 7, 25

Conread position: 153-333
Cow position:
Alignm length: 196
Alignm identity: 143
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 32, 165

Conread position: 158-362
Cow position:
Alignm length: 209
Alignm identity: 145
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 30, 83

Conread position: 158-418
Cow position:
Alignm length: 271
Alignm identity: 196
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 30, 96

Conread position: 158-418
Cow position:
Alignm length: 263
Alignm identity: 192
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 28, 94

Conread position: 158-422
Cow position:
Alignm length: 269
Alignm identity: 191
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 30, 204

Conread position: 158-426
Cow position:
Alignm length: 273
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 86

Conread position: 158-442
Cow position:
Alignm length: 292
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 117

Conread position: 158-442
Cow position:
Alignm length: 290
Alignm identity: 209
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 30, 128

Conread position: 158-442
Cow position:
Alignm length: 291
Alignm identity: 200
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 30, 96

Conread position: 158-442
Cow position:
Alignm length: 287
Alignm identity: 199
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 17, 66

Conread position: 158-458
Cow position:
Alignm length: 303
Alignm identity: 210
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 180, 158

Conread position: 158-468
Cow position:
Alignm length: 317
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 68

Conread position: 158-469
Cow position:
Alignm length: 316
Alignm identity: 221
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 28, 68

Conread position: 158-469
Cow position:
Alignm length: 318
Alignm identity: 220
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 31, 86

Conread position: 158-670
Cow position:
Alignm length: 541
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 86

Conread position: 163-460
Cow position:
Alignm length: 302
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 78

Conread position: 168-422
Cow position:
Alignm length: 258
Alignm identity: 180
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 20, 0

Conread position: 168-422
Cow position:
Alignm length: 259
Alignm identity: 183
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 20, 194

Conread position: 168-455
Cow position:
Alignm length: 294
Alignm identity: 208
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 20, 76

Conread position: 168-469
Cow position:
Alignm length: 308
Alignm identity: 217
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 20, 76

Conread position: 168-662
Cow position:
Alignm length: 518
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 76

Conread position: 168-663
Cow position:
Alignm length: 504
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 76

Conread position: 171-422
Cow position:
Alignm length: 256
Alignm identity: 181
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 17, 191

Conread position: 174-644
Cow position:
Alignm length: 486
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 52

Conread position: 177-422
Cow position:
Alignm length: 253
Alignm identity: 181
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 13, 66

Conread position: 183-397
Cow position:
Alignm length: 216
Alignm identity: 152
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 70, 40

Conread position: 183-413
Cow position:
Alignm length: 242
Alignm identity: 180
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 40, 75

Conread position: 183-422
Cow position:
Alignm length: 241
Alignm identity: 164
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 36, 148

Conread position: 183-460
Cow position:
Alignm length: 280
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 45

Show alignments to all cow chromosomes.