Cow genome map

Conread name: rnje10c_n3.y1

Conread position: 1-653
Cow position: chr25:18474708-18474028 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 251

Conread position: 2-343
Cow position: chr25:18323843-18324199 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 242
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 146, 255

Conread position: 2-345
Cow position: chr25:5568261-5568619 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 246
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 139, 353

Conread position: 2-364
Cow position: chr25:9595829-9595453 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 262
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 103, 95

Conread position: 2-364
Cow position: chr25:21024722-21025113 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 267
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 71, 15

Conread position: 2-369
Cow position: chr25:17420008-17420399 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 275
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 36, 99

Conread position: 2-419
Cow position: chr25:13332929-13332497 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 320

Conread position: 2-422
Cow position: chr25:12755922-12756342 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 88

Conread position: 2-422
Cow position: chr25:18269966-18269550 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 66

Conread position: 2-437
Cow position: chr25:25510405-25509951 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 105

Conread position: 2-442
Cow position: chr25:19367185-19367638 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 24

Conread position: 2-459
Cow position: chr25:11666178-11665713 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 256

Conread position: 2-460
Cow position: chr25:41097683-41098150 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 318
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 75, 24

Conread position: 2-468
Cow position: chr25:34343395-34343874 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 30

Conread position: 2-468
Cow position: chr25:41356287-41356766 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 86

Conread position: 2-469
Cow position: chr25:9055175-9054702 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 324
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 103, 95

Conread position: 2-469
Cow position: chr25:18885968-18886448 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 257

Conread position: 2-469
Cow position: chr25:26282540-26282058 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 257

Conread position: 2-469
Cow position: chr25:27231863-27231392 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 215

Conread position: 2-469
Cow position: chr25:28863385-28862905 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 95

Conread position: 2-469
Cow position: chr25:37593918-37593438 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 320
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 104, 34

Conread position: 2-471
Cow position: chr25:35567374-35567853 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 92

Conread position: 2-482
Cow position: chr25:24227835-24228317 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 45

Conread position: 2-539
Cow position: chr25:31954453-31955002 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 372
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 142, 69

Conread position: 2-546
Cow position: chr25:7800529-7799954 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 370
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 77, 95

Conread position: 3-460
Cow position: chr25:13960574-13960108 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 256

Conread position: 5-423
Cow position: chr25:35589582-35589154 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 297
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 100, 58

Conread position: 5-482
Cow position: chr25:17585503-17586002 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 260

Conread position: 6-441
Cow position: chr25:23325515-23325967 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 302
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 122, 91

Conread position: 7-428
Cow position: chr25:425578-426010 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 284
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 125, 48

Conread position: 11-422
Cow position: chr25:4857991-4858421 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 290
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 95, 86

Conread position: 14-455
Cow position: chr25:13787467-13787020 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 5

Conread position: 18-354
Cow position: chr25:27076557-27076207 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 231
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 87, 79

Conread position: 18-369
Cow position: chr25:17994023-17994392 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 242
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 89, 79

Conread position: 18-405
Cow position: chr25:34121594-34122001 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 275
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 88, 79

Conread position: 18-417
Cow position: chr25:19924019-19923604 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 86

Conread position: 18-419
Cow position: chr25:8935296-8934877 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 79

Conread position: 18-422
Cow position: chr25:3688635-3688213 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 359

Conread position: 18-422
Cow position: chr25:15429180-15429602 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 79

Conread position: 18-422
Cow position: chr25:17210635-17211056 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 79

Conread position: 18-422
Cow position: chr25:19139072-19139494 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 79

Conread position: 18-422
Cow position: chr25:27145922-27145503 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 79

Conread position: 18-422
Cow position: chr25:32609920-32610342 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 79

Conread position: 18-422
Cow position: chr25:35554168-35553745 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 79

Conread position: 18-427
Cow position: chr25:33838872-33838459 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 282
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 81, 40

Conread position: 18-442
Cow position: chr25:4522322-4522754 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 37

Conread position: 18-447
Cow position: chr25:21903932-21903503 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 302
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 129, 62

Conread position: 18-460
Cow position: chr25:8655789-8655333 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 239

Conread position: 18-460
Cow position: chr25:11956328-11955872 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 225

Conread position: 18-460
Cow position: chr25:16922296-16922748 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 87

Conread position: 18-460
Cow position: chr25:19336827-19337284 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 79

Conread position: 18-463
Cow position: chr25:37967457-37967000 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 308
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 129, 10

Conread position: 18-469
Cow position: chr25:34164062-34164528 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 359

Conread position: 18-469
Cow position: chr25:34508682-34509146 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 79

Conread position: 18-643
Cow position: chr25:14755915-14756577 (view UCSC Genome Browser custom track)
Alignm length: 672
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 79

Conread position: 18-671
Cow position: chr25:29525368-29526057 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 79

Conread position: 18-671
Cow position: chr25:36351238-36350544 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 359

Conread position: 21-671
Cow position: chr25:25480142-25480804 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 115

Conread position: 22-417
Cow position: chr25:41135262-41135663 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 268
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 83, 68

Conread position: 22-660
Cow position: chr25:16801931-16801294 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 76

Conread position: 23-422
Cow position: chr25:17808284-17808700 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 74

Conread position: 23-660
Cow position: chr25:26780591-26781267 (view UCSC Genome Browser custom track)
Alignm length: 682
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 236

Conread position: 24-422
Cow position: chr25:22479484-22479900 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 280
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 119, 54

Conread position: 35-422
Cow position: chr25:18330293-18330698 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 277
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 63, 69

Conread position: 35-469
Cow position: chr25:35754764-35755210 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 62

Conread position: 38-353
Cow position: chr25:23672395-23672717 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 28

Conread position: 51-349
Cow position: chr25:5570917-5570607 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 207
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 66, 202

Conread position: 65-422
Cow position: chr25:26755737-26755363 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 21

Conread position: 79-422
Cow position: chr25:2516440-2516080 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 251
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 69, 287

Conread position: 103-480
Cow position: chr25:28275256-28275647 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 153

Conread position: 106-440
Cow position: chr25:23914061-23913729 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 39

Conread position: 119-413
Cow position: chr25:2512025-2511724 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 192
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 36, 0

Conread position: 123-389
Cow position: chr25:9957401-9957661 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 188
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 25, 111

Conread position: 151-422
Cow position: chr25:11125118-11124844 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 193
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 21, 11

Conread position: 158-378
Cow position: chr25:15453361-15453138 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 151
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 30, 0

Conread position: 158-403
Cow position: chr25:16401546-16401795 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 176
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 20, 86

Conread position: 158-416
Cow position: chr25:2648585-2648329 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 177
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 30, 19

Conread position: 158-422
Cow position: chr25:14954695-14954953 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 189
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 100, 83

Conread position: 158-422
Cow position: chr25:17904985-17904718 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 188
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 30, 0

Conread position: 158-422
Cow position: chr25:26705537-26705804 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 186
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 30, 0

Conread position: 158-428
Cow position: chr25:21966734-21966461 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 184
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 30, 0

Conread position: 158-442
Cow position: chr25:40389392-40389676 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 199
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 30, 86

Conread position: 158-469
Cow position: chr25:12938862-12939174 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 226
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 30, 86

Conread position: 158-650
Cow position: chr25:9647297-9646789 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 339
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 27, 74

Conread position: 158-654
Cow position: chr25:2595111-2594598 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 345
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 29, 68

Conread position: 158-663
Cow position: chr25:24204792-24205299 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 71

Conread position: 158-671
Cow position: chr25:26923182-26922646 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 19

Conread position: 159-469
Cow position: chr25:18486803-18486495 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 85

Conread position: 166-364
Cow position: chr25:13961890-13961689 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 140
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 22, 78

Conread position: 168-429
Cow position: chr25:34493821-34494077 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 183
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 90, 47

Conread position: 171-669
Cow position: chr25:10137145-10136629 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 70

Conread position: 175-422
Cow position: chr25:7223104-7223354 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 175
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 13, 0

Conread position: 178-422
Cow position: chr25:23366988-23366740 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 184
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 75, 5

Conread position: 183-366
Cow position: chr25:28242294-28242110 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 128
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 75, 101

Conread position: 183-376
Cow position: chr25:40141187-40141382 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 135
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 46, 0

Conread position: 183-428
Cow position: chr25:10180894-10180655 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 171
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 36, 74

Show alignments to all cow chromosomes.