Cow genome map

Conread name: rnje10c_n3.y1

Conread position: 1-460
Cow position: chr26:18877545-18877103 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 54

Conread position: 1-534
Cow position: chr26:24239468-24238902 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 384
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 128, 243

Conread position: 2-217
Cow position: chr26:23315353-23315582 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 162
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 103, 95

Conread position: 2-277
Cow position: chr26:377754-378030 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 187
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 102, 92

Conread position: 2-366
Cow position: chr26:9867597-9867954 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 246
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 103, 61

Conread position: 2-376
Cow position: chr26:13556445-13556830 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 265
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 145, 56

Conread position: 2-383
Cow position: chr26:23600263-23600656 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 273
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 146, 239

Conread position: 2-405
Cow position: chr26:14897860-14897439 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 288
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 103, 95

Conread position: 2-418
Cow position: chr26:8352487-8352079 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 297
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 146, 61

Conread position: 2-422
Cow position: chr26:20256390-20255959 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 95

Conread position: 2-426
Cow position: chr26:1600426-1600844 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 293
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 145, 16

Conread position: 2-429
Cow position: chr26:5543162-5543586 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 278
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 142, 54

Conread position: 2-452
Cow position: chr26:23591467-23590998 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 257

Conread position: 2-452
Cow position: chr26:33949609-33950066 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 314
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 146, 46

Conread position: 2-460
Cow position: chr26:11370459-11369992 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 84

Conread position: 2-460
Cow position: chr26:20219013-20218550 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 314
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 146, 84

Conread position: 2-469
Cow position: chr26:387450-386969 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 95

Conread position: 2-469
Cow position: chr26:9558098-9558591 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 257

Conread position: 2-469
Cow position: chr26:17428694-17429186 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 266

Conread position: 2-482
Cow position: chr26:22831267-22831762 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 257

Conread position: 2-653
Cow position: chr26:16508835-16508158 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 215

Conread position: 4-382
Cow position: chr26:9100222-9100620 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 267
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 94, 100

Conread position: 4-383
Cow position: chr26:755612-756001 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 269
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 144, 30

Conread position: 5-469
Cow position: chr26:30725140-30725629 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 92

Conread position: 11-478
Cow position: chr26:13806266-13806747 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 86

Conread position: 17-469
Cow position: chr26:3564285-3564750 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 311
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 89, 80

Conread position: 17-469
Cow position: chr26:18857871-18857409 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 307
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 90, 80

Conread position: 18-364
Cow position: chr26:5430056-5430421 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 239
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 89, 79

Conread position: 18-418
Cow position: chr26:1088933-1088522 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 276
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 88, 79

Conread position: 18-419
Cow position: chr26:1346238-1346657 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 280
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 89, 79

Conread position: 18-419
Cow position: chr26:28706307-28706725 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 284
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 87, 79

Conread position: 18-422
Cow position: chr26:1342538-1342961 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 80

Conread position: 18-422
Cow position: chr26:3026684-3027105 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 287
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 87, 79

Conread position: 18-422
Cow position: chr26:3862324-3862744 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 283
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 89, 60

Conread position: 18-422
Cow position: chr26:7677490-7677068 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 41

Conread position: 18-422
Cow position: chr26:9115794-9115373 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 327

Conread position: 18-422
Cow position: chr26:11296648-11297069 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 79

Conread position: 18-422
Cow position: chr26:11537581-11537159 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 79

Conread position: 18-422
Cow position: chr26:13184066-13183644 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 79

Conread position: 18-422
Cow position: chr26:20019849-20019435 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 286
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 129, 222

Conread position: 18-422
Cow position: chr26:26612212-26611790 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 79

Conread position: 18-422
Cow position: chr26:34265720-34265298 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 79

Conread position: 18-422
Cow position: chr26:35121487-35121908 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 284
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 88, 79

Conread position: 18-422
Cow position: chr26:35560307-35560727 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 290
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 88, 79

Conread position: 18-428
Cow position: chr26:2610317-2610736 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 298

Conread position: 18-438
Cow position: chr26:8307999-8308449 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 306
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 130, 26

Conread position: 18-458
Cow position: chr26:31138199-31138648 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 52

Conread position: 18-460
Cow position: chr26:7558862-7559319 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 79

Conread position: 18-460
Cow position: chr26:29433988-29433529 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 79

Conread position: 18-469
Cow position: chr26:3231221-3230757 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 314
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 87, 79

Conread position: 18-469
Cow position: chr26:7459212-7459675 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 316
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 129, 29

Conread position: 18-469
Cow position: chr26:8084582-8084115 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 79

Conread position: 18-469
Cow position: chr26:8738661-8739128 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 79

Conread position: 18-469
Cow position: chr26:17169578-17169119 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 198

Conread position: 18-469
Cow position: chr26:23890159-23889701 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 79

Conread position: 18-469
Cow position: chr26:35424253-35423788 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 79

Conread position: 18-514
Cow position: chr26:9070318-9069807 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 79

Conread position: 18-541
Cow position: chr26:18929031-18928471 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 79

Conread position: 18-660
Cow position: chr26:30585604-30586274 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 79

Conread position: 18-671
Cow position: chr26:4440015-4440693 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 79

Conread position: 21-422
Cow position: chr26:8885595-8885177 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 238

Conread position: 21-422
Cow position: chr26:15146247-15145828 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 283
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 85, 76

Conread position: 21-482
Cow position: chr26:30786679-30786203 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 316
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 84, 65

Conread position: 22-383
Cow position: chr26:2347960-2348334 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 250
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 125, 101

Conread position: 22-422
Cow position: chr26:1390734-1390316 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 281
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 85, 75

Conread position: 22-455
Cow position: chr26:3096897-3097347 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 299
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 125, 355

Conread position: 26-662
Cow position: chr26:798795-799460 (view UCSC Genome Browser custom track)
Alignm length: 670
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 491

Conread position: 27-419
Cow position: chr26:6097823-6098227 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 283
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 9, 57

Conread position: 35-325
Cow position: chr26:30569391-30569700 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 219
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 71, 51

Conread position: 47-342
Cow position: chr26:15938104-15937794 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 230
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 96, 213

Conread position: 65-507
Cow position: chr26:1013271-1012828 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 318
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 83, 178

Conread position: 66-540
Cow position: chr26:32050617-32051121 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 320
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 21, 30

Conread position: 69-397
Cow position: chr26:20185747-20185398 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 336

Conread position: 78-469
Cow position: chr26:13773739-13773340 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 12

Conread position: 151-469
Cow position: chr26:9836078-9835760 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 12

Conread position: 158-368
Cow position: chr26:11902943-11902733 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 154
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 30, 86

Conread position: 158-383
Cow position: chr26:4806732-4806507 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 153
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 178, 201

Conread position: 158-419
Cow position: chr26:16720078-16719811 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 196
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 11, 97

Conread position: 158-422
Cow position: chr26:18803768-18804036 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 196
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 30, 204

Conread position: 158-422
Cow position: chr26:25807022-25806759 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 180
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 19, 68

Conread position: 158-424
Cow position: chr26:34031147-34030886 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 194
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 30, 83

Conread position: 158-426
Cow position: chr26:34015439-34015166 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 193
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 29, 195

Conread position: 158-429
Cow position: chr26:7522481-7522759 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 188
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 27, 84

Conread position: 158-460
Cow position: chr26:3833635-3833331 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 212
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 30, 204

Conread position: 158-460
Cow position: chr26:12584937-12585241 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 207
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 30, 204

Conread position: 158-469
Cow position: chr26:2202129-2201819 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 212
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 30, 205

Conread position: 158-469
Cow position: chr26:9694197-9694507 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 86

Conread position: 158-469
Cow position: chr26:35190947-35191259 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 212
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 30, 204

Conread position: 159-428
Cow position: chr26:35148285-35148551 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 180
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 31, 75

Conread position: 165-430
Cow position: chr26:23809835-23810099 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 193
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 93, 74

Conread position: 168-414
Cow position: chr26:581174-581423 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 177
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 20, 0

Conread position: 168-422
Cow position: chr26:30752748-30753005 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 181
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 21, 0

Conread position: 168-469
Cow position: chr26:4728734-4729035 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 211
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 20, 194

Conread position: 180-566
Cow position: chr26:21823032-21823423 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 43

Conread position: 183-427
Cow position: chr26:7900042-7900277 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 170
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 155, 76

Show alignments to all cow chromosomes.