Cow genome map
| Conread name: | rnje10c_n3.y1 |
| Conread position: | 2-295 |
| Cow position: | chr27:8569285-8568983 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 53, 145 |
| Conread position: | 2-308 |
| Cow position: | chr27:10321785-10321466 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 218 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 142, 253 |
| Conread position: | 2-366 |
| Cow position: | chr27:27728767-27729146 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 259 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 110, 76 |
| Conread position: | 2-383 |
| Cow position: | chr27:12751256-12750864 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 272 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 146, 86 |
| Conread position: | 2-415 |
| Cow position: | chr27:13409723-13409288 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 296 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 117, 84 |
| Conread position: | 2-419 |
| Cow position: | chr27:2557267-2557701 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 266 |
| Conread position: | 2-419 |
| Cow position: | chr27:28984493-28984061 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 258 |
| Conread position: | 2-422 |
| Cow position: | chr27:10306829-10306406 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 291 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 146, 95 |
| Conread position: | 2-422 |
| Cow position: | chr27:15272350-15272781 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 95 |
| Conread position: | 2-425 |
| Cow position: | chr27:23793920-23794346 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 282 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 146, 53 |
| Conread position: | 2-469 |
| Cow position: | chr27:8973172-8972688 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 84 |
| Conread position: | 2-469 |
| Cow position: | chr27:11481657-11481175 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 33 |
| Conread position: | 2-469 |
| Cow position: | chr27:15033165-15033647 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 95 |
| Conread position: | 2-469 |
| Cow position: | chr27:15871605-15872077 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 21 |
| Conread position: | 2-469 |
| Cow position: | chr27:24295533-24296025 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 95 |
| Conread position: | 2-469 |
| Cow position: | chr27:26330654-26330176 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 95 |
| Conread position: | 2-642 |
| Cow position: | chr27:13182562-13183219 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 242 |
| Conread position: | 2-651 |
| Cow position: | chr27:29812028-29811365 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 95 |
| Conread position: | 2-660 |
| Cow position: | chr27:344206-344897 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 53 |
| Conread position: | 2-660 |
| Cow position: | chr27:20811143-20810447 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 95 |
| Conread position: | 2-671 |
| Cow position: | chr27:25800484-25801190 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 257 |
| Conread position: | 2-671 |
| Cow position: | chr27:26856767-26856073 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 257 |
| Conread position: | 2-671 |
| Cow position: | chr27:27292120-27291405 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 102 |
| Conread position: | 5-429 |
| Cow position: | chr27:17049722-17050161 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 298 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 87, 109 |
| Conread position: | 18-328 |
| Cow position: | chr27:16823265-16823585 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 87, 45 |
| Conread position: | 18-349 |
| Cow position: | chr27:11954804-11954462 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 130, 237 |
| Conread position: | 18-379 |
| Cow position: | chr27:30697261-30696889 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 258 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 25, 17 |
| Conread position: | 18-404 |
| Cow position: | chr27:13422453-13422857 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 275 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 88, 79 |
| Conread position: | 18-422 |
| Cow position: | chr27:1521390-1520969 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 284 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 81, 364 |
| Conread position: | 18-422 |
| Cow position: | chr27:2001555-2001134 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 79 |
| Conread position: | 18-422 |
| Cow position: | chr27:3650192-3649770 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 79 |
| Conread position: | 18-422 |
| Cow position: | chr27:12006859-12006437 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 79 |
| Conread position: | 18-422 |
| Cow position: | chr27:19299855-19300277 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 276 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 129, 359 |
| Conread position: | 18-422 |
| Cow position: | chr27:22796948-22797370 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 79 |
| Conread position: | 18-458 |
| Cow position: | chr27:3652989-3653446 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 241 |
| Conread position: | 18-460 |
| Cow position: | chr27:165210-165667 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 312 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 89, 79 |
| Conread position: | 18-460 |
| Cow position: | chr27:10579654-10579199 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 309 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 129, 241 |
| Conread position: | 18-469 |
| Cow position: | chr27:8959306-8959772 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 313 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 89, 79 |
| Conread position: | 18-469 |
| Cow position: | chr27:13354016-13353550 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 315 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 89, 79 |
| Conread position: | 18-469 |
| Cow position: | chr27:16030687-16031153 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 79 |
| Conread position: | 18-482 |
| Cow position: | chr27:17476512-17476976 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 315 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 89, 79 |
| Conread position: | 21-422 |
| Cow position: | chr27:29035674-29036093 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 76 |
| Conread position: | 21-429 |
| Cow position: | chr27:16428361-16427941 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 52 |
| Conread position: | 34-608 |
| Cow position: | chr27:26653787-26654359 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 21 |
| Conread position: | 35-469 |
| Cow position: | chr27:22330182-22329745 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 314 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 70, 23 |
| Conread position: | 37-427 |
| Cow position: | chr27:2936519-2936109 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 51 |
| Conread position: | 37-469 |
| Cow position: | chr27:25784072-25784510 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 60 |
| Conread position: | 38-323 |
| Cow position: | chr27:12190965-12190661 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 67, 59 |
| Conread position: | 39-439 |
| Cow position: | chr27:12282372-12281961 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 30 |
| Conread position: | 48-469 |
| Cow position: | chr27:14297886-14297451 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 289 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 99, 408 |
| Conread position: | 61-663 |
| Cow position: | chr27:11490288-11489660 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 206 |
| Conread position: | 63-591 |
| Cow position: | chr27:11256023-11256570 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 6 |
| Conread position: | 67-440 |
| Cow position: | chr27:19388528-19388925 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 275 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 38, 30 |
| Conread position: | 69-670 |
| Cow position: | chr27:17864636-17864028 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 391 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 132-639 |
| Cow position: | chr27:26551806-26552334 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 9 |
| Conread position: | 144-456 |
| Cow position: | chr27:309891-310200 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 112, 68 |
| Conread position: | 149-381 |
| Cow position: | chr27:17423175-17422935 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 39, 13 |
| Conread position: | 158-383 |
| Cow position: | chr27:723911-723683 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 158-422 |
| Cow position: | chr27:2682078-2681809 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 158-422 |
| Cow position: | chr27:14859879-14859616 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 30, 96 |
| Conread position: | 158-469 |
| Cow position: | chr27:12239623-12239312 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 226 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 29, 96 |
| Conread position: | 158-469 |
| Cow position: | chr27:15633787-15634098 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 226 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 30, 86 |
| Conread position: | 158-469 |
| Cow position: | chr27:27557354-27557046 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 30, 68 |
| Conread position: | 158-482 |
| Cow position: | chr27:8291405-8291072 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 28, 299 |
| Conread position: | 158-590 |
| Cow position: | chr27:25791983-25792434 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 302 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 60, 110 |
| Conread position: | 158-606 |
| Cow position: | chr27:14669758-14669277 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 320 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 27, 413 |
| Conread position: | 168-422 |
| Cow position: | chr27:9970717-9970460 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 171-418 |
| Cow position: | chr27:5925806-5925560 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 13, 48 |
| Conread position: | 175-634 |
| Cow position: | chr27:27930741-27930259 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 178 |
| Conread position: | 183-422 |
| Cow position: | chr27:816235-816473 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 181 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 47, 68 |
Show alignments to all cow chromosomes.