Cow genome map
| Conread name: | rnje10c_n3.y1 | 
| Conread position: | 1-343 | 
| Cow position: | chr3:76923651-76923996 (view UCSC Genome Browser custom track) | 
| Alignm length: | 355 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 9e-26 | 
| Alignm gaps (pig, cow): | 106, 34 | 
| Conread position: | 1-469 | 
| Cow position: | chr3:24585569-24586056 (view UCSC Genome Browser custom track) | 
| Alignm length: | 493 | 
| Alignm identity: | 337 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 96 | 
| Conread position: | 1-482 | 
| Cow position: | chr3:2118111-2117606 (view UCSC Genome Browser custom track) | 
| Alignm length: | 510 | 
| Alignm identity: | 353 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 147, 363 | 
| Conread position: | 2-244 | 
| Cow position: | chr3:46062989-46062734 (view UCSC Genome Browser custom track) | 
| Alignm length: | 257 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 103, 95 | 
| Conread position: | 2-285 | 
| Cow position: | chr3:49649871-49649574 (view UCSC Genome Browser custom track) | 
| Alignm length: | 300 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 78, 96 | 
| Conread position: | 2-325 | 
| Cow position: | chr3:56302151-56302489 (view UCSC Genome Browser custom track) | 
| Alignm length: | 343 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 153, 76 | 
| Conread position: | 2-327 | 
| Cow position: | chr3:61243036-61242697 (view UCSC Genome Browser custom track) | 
| Alignm length: | 344 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 7e-34 | 
| Alignm gaps (pig, cow): | 146, 105 | 
| Conread position: | 2-363 | 
| Cow position: | chr3:15379554-15379930 (view UCSC Genome Browser custom track) | 
| Alignm length: | 382 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 4.99997e-41 | 
| Alignm gaps (pig, cow): | 103, 88 | 
| Conread position: | 2-364 | 
| Cow position: | chr3:48269349-48268970 (view UCSC Genome Browser custom track) | 
| Alignm length: | 387 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 9e-26 | 
| Alignm gaps (pig, cow): | 59, 53 | 
| Conread position: | 2-366 | 
| Cow position: | chr3:75157701-75158073 (view UCSC Genome Browser custom track) | 
| Alignm length: | 383 | 
| Alignm identity: | 264 | 
| Alignm E-value: | 4.99997e-41 | 
| Alignm gaps (pig, cow): | 75, 96 | 
| Conread position: | 2-367 | 
| Cow position: | chr3:18245926-18246308 (view UCSC Genome Browser custom track) | 
| Alignm length: | 385 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 73, 239 | 
| Conread position: | 2-370 | 
| Cow position: | chr3:32839080-32838695 (view UCSC Genome Browser custom track) | 
| Alignm length: | 392 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 35, 26 | 
| Conread position: | 2-382 | 
| Cow position: | chr3:19027801-19028190 (view UCSC Genome Browser custom track) | 
| Alignm length: | 400 | 
| Alignm identity: | 273 | 
| Alignm E-value: | 1e-37 | 
| Alignm gaps (pig, cow): | 141, 56 | 
| Conread position: | 2-388 | 
| Cow position: | chr3:9665296-9665699 (view UCSC Genome Browser custom track) | 
| Alignm length: | 407 | 
| Alignm identity: | 276 | 
| Alignm E-value: | 2.00386e-43 | 
| Alignm gaps (pig, cow): | 103, 48 | 
| Conread position: | 2-403 | 
| Cow position: | chr3:21100460-21100042 (view UCSC Genome Browser custom track) | 
| Alignm length: | 423 | 
| Alignm identity: | 290 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 103, 41 | 
| Conread position: | 2-407 | 
| Cow position: | chr3:16005140-16005575 (view UCSC Genome Browser custom track) | 
| Alignm length: | 439 | 
| Alignm identity: | 294 | 
| Alignm E-value: | 3e-37 | 
| Alignm gaps (pig, cow): | 26, 97 | 
| Conread position: | 2-407 | 
| Cow position: | chr3:81374594-81375017 (view UCSC Genome Browser custom track) | 
| Alignm length: | 428 | 
| Alignm identity: | 302 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 103, 95 | 
| Conread position: | 2-411 | 
| Cow position: | chr3:63176997-63176579 (view UCSC Genome Browser custom track) | 
| Alignm length: | 429 | 
| Alignm identity: | 299 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 103, 61 | 
| Conread position: | 2-413 | 
| Cow position: | chr3:56160169-56160597 (view UCSC Genome Browser custom track) | 
| Alignm length: | 431 | 
| Alignm identity: | 285 | 
| Alignm E-value: | 4.99983e-42 | 
| Alignm gaps (pig, cow): | 146, 134 | 
| Conread position: | 2-418 | 
| Cow position: | chr3:12668350-12667920 (view UCSC Genome Browser custom track) | 
| Alignm length: | 440 | 
| Alignm identity: | 292 | 
| Alignm E-value: | 9e-37 | 
| Alignm gaps (pig, cow): | 146, 53 | 
| Conread position: | 2-422 | 
| Cow position: | chr3:14285386-14284953 (view UCSC Genome Browser custom track) | 
| Alignm length: | 443 | 
| Alignm identity: | 300 | 
| Alignm E-value: | 7.00649e-45 | 
| Alignm gaps (pig, cow): | 21, 96 | 
| Conread position: | 2-422 | 
| Cow position: | chr3:22234834-22235282 (view UCSC Genome Browser custom track) | 
| Alignm length: | 449 | 
| Alignm identity: | 298 | 
| Alignm E-value: | 4.99997e-41 | 
| Alignm gaps (pig, cow): | 96, 0 | 
| Conread position: | 2-429 | 
| Cow position: | chr3:80261200-80261630 (view UCSC Genome Browser custom track) | 
| Alignm length: | 434 | 
| Alignm identity: | 287 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 141, 254 | 
| Conread position: | 2-439 | 
| Cow position: | chr3:51597569-51597138 (view UCSC Genome Browser custom track) | 
| Alignm length: | 452 | 
| Alignm identity: | 297 | 
| Alignm E-value: | 9e-37 | 
| Alignm gaps (pig, cow): | 145, 124 | 
| Conread position: | 2-439 | 
| Cow position: | chr3:52725617-52726073 (view UCSC Genome Browser custom track) | 
| Alignm length: | 463 | 
| Alignm identity: | 325 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 142, 19 | 
| Conread position: | 2-442 | 
| Cow position: | chr3:13352466-13352929 (view UCSC Genome Browser custom track) | 
| Alignm length: | 476 | 
| Alignm identity: | 322 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 103, 27 | 
| Conread position: | 2-442 | 
| Cow position: | chr3:37982708-37983167 (view UCSC Genome Browser custom track) | 
| Alignm length: | 463 | 
| Alignm identity: | 324 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 103, 95 | 
| Conread position: | 2-442 | 
| Cow position: | chr3:60932921-60932465 (view UCSC Genome Browser custom track) | 
| Alignm length: | 461 | 
| Alignm identity: | 317 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 146, 25 | 
| Conread position: | 2-447 | 
| Cow position: | chr3:16115055-16114597 (view UCSC Genome Browser custom track) | 
| Alignm length: | 466 | 
| Alignm identity: | 335 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 44 | 
| Conread position: | 2-459 | 
| Cow position: | chr3:13275620-13276098 (view UCSC Genome Browser custom track) | 
| Alignm length: | 483 | 
| Alignm identity: | 323 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 146, 257 | 
| Conread position: | 2-459 | 
| Cow position: | chr3:49388310-49387832 (view UCSC Genome Browser custom track) | 
| Alignm length: | 484 | 
| Alignm identity: | 342 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 75, 45 | 
| Conread position: | 2-459 | 
| Cow position: | chr3:50921684-50921223 (view UCSC Genome Browser custom track) | 
| Alignm length: | 469 | 
| Alignm identity: | 321 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 146, 229 | 
| Conread position: | 2-459 | 
| Cow position: | chr3:74391251-74391722 (view UCSC Genome Browser custom track) | 
| Alignm length: | 482 | 
| Alignm identity: | 324 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 25, 42 | 
| Conread position: | 2-460 | 
| Cow position: | chr3:522230-521759 (view UCSC Genome Browser custom track) | 
| Alignm length: | 479 | 
| Alignm identity: | 327 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 102, 92 | 
| Conread position: | 2-460 | 
| Cow position: | chr3:18815151-18814689 (view UCSC Genome Browser custom track) | 
| Alignm length: | 469 | 
| Alignm identity: | 315 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 93 | 
| Conread position: | 2-460 | 
| Cow position: | chr3:37628540-37628072 (view UCSC Genome Browser custom track) | 
| Alignm length: | 478 | 
| Alignm identity: | 328 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 153, 246 | 
| Conread position: | 2-466 | 
| Cow position: | chr3:77472343-77472813 (view UCSC Genome Browser custom track) | 
| Alignm length: | 487 | 
| Alignm identity: | 340 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 102 | 
| Conread position: | 2-469 | 
| Cow position: | chr3:2707217-2707699 (view UCSC Genome Browser custom track) | 
| Alignm length: | 489 | 
| Alignm identity: | 333 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 146, 257 | 
| Conread position: | 2-469 | 
| Cow position: | chr3:10244317-10243834 (view UCSC Genome Browser custom track) | 
| Alignm length: | 490 | 
| Alignm identity: | 341 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 103, 95 | 
| Conread position: | 2-469 | 
| Cow position: | chr3:11785008-11784538 (view UCSC Genome Browser custom track) | 
| Alignm length: | 479 | 
| Alignm identity: | 324 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 103, 248 | 
| Conread position: | 2-469 | 
| Cow position: | chr3:17865086-17864604 (view UCSC Genome Browser custom track) | 
| Alignm length: | 491 | 
| Alignm identity: | 337 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 110, 95 | 
| Conread position: | 2-469 | 
| Cow position: | chr3:23216676-23217151 (view UCSC Genome Browser custom track) | 
| Alignm length: | 491 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 135, 76 | 
| Conread position: | 2-469 | 
| Cow position: | chr3:31422468-31422952 (view UCSC Genome Browser custom track) | 
| Alignm length: | 492 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 103, 95 | 
| Conread position: | 2-469 | 
| Cow position: | chr3:38096558-38096074 (view UCSC Genome Browser custom track) | 
| Alignm length: | 490 | 
| Alignm identity: | 339 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 146, 257 | 
| Conread position: | 2-469 | 
| Cow position: | chr3:42847001-42846519 (view UCSC Genome Browser custom track) | 
| Alignm length: | 488 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 146, 257 | 
| Conread position: | 2-469 | 
| Cow position: | chr3:46753498-46753021 (view UCSC Genome Browser custom track) | 
| Alignm length: | 482 | 
| Alignm identity: | 319 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 81, 251 | 
| Conread position: | 2-469 | 
| Cow position: | chr3:47272221-47272704 (view UCSC Genome Browser custom track) | 
| Alignm length: | 489 | 
| Alignm identity: | 340 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 143, 257 | 
| Conread position: | 2-469 | 
| Cow position: | chr3:48603914-48603427 (view UCSC Genome Browser custom track) | 
| Alignm length: | 497 | 
| Alignm identity: | 341 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 146, 56 | 
| Conread position: | 2-469 | 
| Cow position: | chr3:56644673-56645156 (view UCSC Genome Browser custom track) | 
| Alignm length: | 490 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 146, 257 | 
| Conread position: | 2-469 | 
| Cow position: | chr3:57481100-57481562 (view UCSC Genome Browser custom track) | 
| Alignm length: | 488 | 
| Alignm identity: | 326 | 
| Alignm E-value: | 1e-37 | 
| Alignm gaps (pig, cow): | 97, 47 | 
| Conread position: | 2-469 | 
| Cow position: | chr3:60184513-60184998 (view UCSC Genome Browser custom track) | 
| Alignm length: | 491 | 
| Alignm identity: | 328 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 146, 254 | 
| Conread position: | 2-469 | 
| Cow position: | chr3:64376062-64376536 (view UCSC Genome Browser custom track) | 
| Alignm length: | 486 | 
| Alignm identity: | 333 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 146, 19 | 
| Conread position: | 2-469 | 
| Cow position: | chr3:65989564-65989095 (view UCSC Genome Browser custom track) | 
| Alignm length: | 485 | 
| Alignm identity: | 325 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 146, 254 | 
| Conread position: | 2-469 | 
| Cow position: | chr3:72633730-72633248 (view UCSC Genome Browser custom track) | 
| Alignm length: | 489 | 
| Alignm identity: | 339 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 103, 95 | 
| Conread position: | 2-469 | 
| Cow position: | chr3:73450655-73451139 (view UCSC Genome Browser custom track) | 
| Alignm length: | 491 | 
| Alignm identity: | 336 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 145, 258 | 
| Conread position: | 2-469 | 
| Cow position: | chr3:75038184-75038667 (view UCSC Genome Browser custom track) | 
| Alignm length: | 490 | 
| Alignm identity: | 345 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 103, 95 | 
| Conread position: | 2-469 | 
| Cow position: | chr3:75997239-75997714 (view UCSC Genome Browser custom track) | 
| Alignm length: | 485 | 
| Alignm identity: | 327 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 103, 67 | 
| Conread position: | 2-469 | 
| Cow position: | chr3:78023790-78024261 (view UCSC Genome Browser custom track) | 
| Alignm length: | 482 | 
| Alignm identity: | 329 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 146, 130 | 
| Conread position: | 2-480 | 
| Cow position: | chr3:59865137-59864642 (view UCSC Genome Browser custom track) | 
| Alignm length: | 502 | 
| Alignm identity: | 358 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 103, 95 | 
| Conread position: | 2-482 | 
| Cow position: | chr3:14466214-14466702 (view UCSC Genome Browser custom track) | 
| Alignm length: | 505 | 
| Alignm identity: | 331 | 
| Alignm E-value: | 1e-37 | 
| Alignm gaps (pig, cow): | 152, 93 | 
| Conread position: | 2-588 | 
| Cow position: | chr3:70249779-70250366 (view UCSC Genome Browser custom track) | 
| Alignm length: | 612 | 
| Alignm identity: | 393 | 
| Alignm E-value: | 9e-37 | 
| Alignm gaps (pig, cow): | 28, 78 | 
| Conread position: | 2-650 | 
| Cow position: | chr3:3031889-3031218 (view UCSC Genome Browser custom track) | 
| Alignm length: | 683 | 
| Alignm identity: | 436 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 18, 256 | 
| Conread position: | 2-654 | 
| Cow position: | chr3:21082516-21081876 (view UCSC Genome Browser custom track) | 
| Alignm length: | 677 | 
| Alignm identity: | 452 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 32 | 
| Conread position: | 2-660 | 
| Cow position: | chr3:3836950-3837628 (view UCSC Genome Browser custom track) | 
| Alignm length: | 703 | 
| Alignm identity: | 457 | 
| Alignm E-value: | 7.00649e-45 | 
| Alignm gaps (pig, cow): | 103, 95 | 
| Conread position: | 2-660 | 
| Cow position: | chr3:19216555-19215873 (view UCSC Genome Browser custom track) | 
| Alignm length: | 688 | 
| Alignm identity: | 477 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 103, 95 | 
| Conread position: | 2-660 | 
| Cow position: | chr3:38870223-38869530 (view UCSC Genome Browser custom track) | 
| Alignm length: | 700 | 
| Alignm identity: | 468 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 103, 95 | 
| Conread position: | 2-660 | 
| Cow position: | chr3:45978157-45977459 (view UCSC Genome Browser custom track) | 
| Alignm length: | 706 | 
| Alignm identity: | 461 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 103, 95 | 
| Conread position: | 2-660 | 
| Cow position: | chr3:69930179-69930877 (view UCSC Genome Browser custom track) | 
| Alignm length: | 705 | 
| Alignm identity: | 485 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 146, 257 | 
| Conread position: | 2-662 | 
| Cow position: | chr3:21302941-21303595 (view UCSC Genome Browser custom track) | 
| Alignm length: | 686 | 
| Alignm identity: | 445 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 102, 59 | 
| Conread position: | 2-663 | 
| Cow position: | chr3:25690284-25689609 (view UCSC Genome Browser custom track) | 
| Alignm length: | 687 | 
| Alignm identity: | 479 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 103, 76 | 
| Conread position: | 2-668 | 
| Cow position: | chr3:24454896-24455568 (view UCSC Genome Browser custom track) | 
| Alignm length: | 686 | 
| Alignm identity: | 457 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 67, 149 | 
| Conread position: | 2-671 | 
| Cow position: | chr3:226235-226931 (view UCSC Genome Browser custom track) | 
| Alignm length: | 709 | 
| Alignm identity: | 467 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 146, 122 | 
| Conread position: | 2-671 | 
| Cow position: | chr3:17937360-17938056 (view UCSC Genome Browser custom track) | 
| Alignm length: | 702 | 
| Alignm identity: | 471 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 102 | 
| Conread position: | 2-671 | 
| Cow position: | chr3:23169581-23170247 (view UCSC Genome Browser custom track) | 
| Alignm length: | 689 | 
| Alignm identity: | 459 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 146, 12 | 
| Conread position: | 2-671 | 
| Cow position: | chr3:49541551-49542255 (view UCSC Genome Browser custom track) | 
| Alignm length: | 710 | 
| Alignm identity: | 480 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 146, 81 | 
| Conread position: | 3-284 | 
| Cow position: | chr3:45342430-45342136 (view UCSC Genome Browser custom track) | 
| Alignm length: | 300 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 144, 217 | 
| Conread position: | 3-422 | 
| Cow position: | chr3:20379063-20379499 (view UCSC Genome Browser custom track) | 
| Alignm length: | 440 | 
| Alignm identity: | 293 | 
| Alignm E-value: | 7.00649e-44 | 
| Alignm gaps (pig, cow): | 105, 91 | 
| Conread position: | 3-459 | 
| Cow position: | chr3:30939153-30938680 (view UCSC Genome Browser custom track) | 
| Alignm length: | 483 | 
| Alignm identity: | 333 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 145, 41 | 
| Conread position: | 3-469 | 
| Cow position: | chr3:27867311-27866838 (view UCSC Genome Browser custom track) | 
| Alignm length: | 488 | 
| Alignm identity: | 344 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 50, 244 | 
| Conread position: | 3-469 | 
| Cow position: | chr3:36874405-36874886 (view UCSC Genome Browser custom track) | 
| Alignm length: | 488 | 
| Alignm identity: | 335 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 157, 134 | 
| Conread position: | 3-469 | 
| Cow position: | chr3:56148945-56148467 (view UCSC Genome Browser custom track) | 
| Alignm length: | 489 | 
| Alignm identity: | 334 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 101, 75 | 
| Conread position: | 4-242 | 
| Cow position: | chr3:66610353-66610598 (view UCSC Genome Browser custom track) | 
| Alignm length: | 247 | 
| Alignm identity: | 163 | 
| Alignm E-value: | 5e-21 | 
| Alignm gaps (pig, cow): | 101, 93 | 
| Conread position: | 4-429 | 
| Cow position: | chr3:1483676-1483242 (view UCSC Genome Browser custom track) | 
| Alignm length: | 445 | 
| Alignm identity: | 302 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 42, 235 | 
| Conread position: | 4-460 | 
| Cow position: | chr3:59603456-59602984 (view UCSC Genome Browser custom track) | 
| Alignm length: | 477 | 
| Alignm identity: | 325 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 144, 254 | 
| Conread position: | 5-368 | 
| Cow position: | chr3:28922650-28922269 (view UCSC Genome Browser custom track) | 
| Alignm length: | 383 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 8e-35 | 
| Alignm gaps (pig, cow): | 101, 92 | 
| Conread position: | 5-381 | 
| Cow position: | chr3:54608358-54608747 (view UCSC Genome Browser custom track) | 
| Alignm length: | 397 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 5e-31 | 
| Alignm gaps (pig, cow): | 140, 254 | 
| Conread position: | 5-422 | 
| Cow position: | chr3:4135325-4135762 (view UCSC Genome Browser custom track) | 
| Alignm length: | 440 | 
| Alignm identity: | 299 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 90, 256 | 
| Conread position: | 5-422 | 
| Cow position: | chr3:40520285-40520720 (view UCSC Genome Browser custom track) | 
| Alignm length: | 438 | 
| Alignm identity: | 293 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 101, 92 | 
| Conread position: | 5-469 | 
| Cow position: | chr3:44927468-44926988 (view UCSC Genome Browser custom track) | 
| Alignm length: | 488 | 
| Alignm identity: | 318 | 
| Alignm E-value: | 1.99993e-41 | 
| Alignm gaps (pig, cow): | 142, 300 | 
| Conread position: | 5-591 | 
| Cow position: | chr3:44365671-44365062 (view UCSC Genome Browser custom track) | 
| Alignm length: | 626 | 
| Alignm identity: | 405 | 
| Alignm E-value: | 3e-37 | 
| Alignm gaps (pig, cow): | 125, 27 | 
| Conread position: | 11-422 | 
| Cow position: | chr3:36417388-36416959 (view UCSC Genome Browser custom track) | 
| Alignm length: | 433 | 
| Alignm identity: | 293 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 95, 86 | 
| Conread position: | 11-437 | 
| Cow position: | chr3:7245460-7245902 (view UCSC Genome Browser custom track) | 
| Alignm length: | 446 | 
| Alignm identity: | 308 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 88, 93 | 
| Conread position: | 11-459 | 
| Cow position: | chr3:6442715-6442252 (view UCSC Genome Browser custom track) | 
| Alignm length: | 468 | 
| Alignm identity: | 318 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 79 | 
| Conread position: | 11-469 | 
| Cow position: | chr3:7155158-7155632 (view UCSC Genome Browser custom track) | 
| Alignm length: | 480 | 
| Alignm identity: | 313 | 
| Alignm E-value: | 4.99997e-41 | 
| Alignm gaps (pig, cow): | 97, 86 | 
| Conread position: | 17-469 | 
| Cow position: | chr3:28435065-28435524 (view UCSC Genome Browser custom track) | 
| Alignm length: | 470 | 
| Alignm identity: | 319 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 130, 109 | 
| Conread position: | 17-671 | 
| Cow position: | chr3:30615299-30615991 (view UCSC Genome Browser custom track) | 
| Alignm length: | 699 | 
| Alignm identity: | 474 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 206 | 
| Conread position: | 18-370 | 
| Cow position: | chr3:34037610-34037240 (view UCSC Genome Browser custom track) | 
| Alignm length: | 372 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 3e-35 | 
| Alignm gaps (pig, cow): | 87, 79 | 
| Conread position: | 18-372 | 
| Cow position: | chr3:1622742-1622370 (view UCSC Genome Browser custom track) | 
| Alignm length: | 375 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 7e-34 | 
| Alignm gaps (pig, cow): | 88, 79 | 
| Conread position: | 18-373 | 
| Cow position: | chr3:80741512-80741139 (view UCSC Genome Browser custom track) | 
| Alignm length: | 375 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 6e-32 | 
| Alignm gaps (pig, cow): | 88, 79 | 
| Conread position: | 18-388 | 
| Cow position: | chr3:16333058-16332674 (view UCSC Genome Browser custom track) | 
| Alignm length: | 391 | 
| Alignm identity: | 274 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 115, 47 | 
| Conread position: | 18-401 | 
| Cow position: | chr3:37020582-37020975 (view UCSC Genome Browser custom track) | 
| Alignm length: | 403 | 
| Alignm identity: | 264 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 129, 239 | 
| Conread position: | 18-403 | 
| Cow position: | chr3:38748022-38747619 (view UCSC Genome Browser custom track) | 
| Alignm length: | 406 | 
| Alignm identity: | 273 | 
| Alignm E-value: | 1.99965e-42 | 
| Alignm gaps (pig, cow): | 87, 79 | 
| Conread position: | 18-403 | 
| Cow position: | chr3:45946884-45947286 (view UCSC Genome Browser custom track) | 
| Alignm length: | 405 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 129, 323 | 
| Conread position: | 18-404 | 
| Cow position: | chr3:6884787-6884382 (view UCSC Genome Browser custom track) | 
| Alignm length: | 408 | 
| Alignm identity: | 272 | 
| Alignm E-value: | 4e-39 | 
| Alignm gaps (pig, cow): | 87, 79 | 
| Conread position: | 18-409 | 
| Cow position: | chr3:70074462-70074870 (view UCSC Genome Browser custom track) | 
| Alignm length: | 411 | 
| Alignm identity: | 275 | 
| Alignm E-value: | 1.99965e-42 | 
| Alignm gaps (pig, cow): | 87, 79 | 
| Conread position: | 18-411 | 
| Cow position: | chr3:52045378-52045789 (view UCSC Genome Browser custom track) | 
| Alignm length: | 413 | 
| Alignm identity: | 277 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 87, 79 | 
| Conread position: | 18-414 | 
| Cow position: | chr3:50217633-50217219 (view UCSC Genome Browser custom track) | 
| Alignm length: | 416 | 
| Alignm identity: | 281 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 87, 79 | 
| Conread position: | 18-418 | 
| Cow position: | chr3:19797462-19797879 (view UCSC Genome Browser custom track) | 
| Alignm length: | 422 | 
| Alignm identity: | 278 | 
| Alignm E-value: | 3e-36 | 
| Alignm gaps (pig, cow): | 86, 77 | 
| Conread position: | 18-420 | 
| Cow position: | chr3:11736746-11737172 (view UCSC Genome Browser custom track) | 
| Alignm length: | 430 | 
| Alignm identity: | 296 | 
| Alignm E-value: | 2.00386e-43 | 
| Alignm gaps (pig, cow): | 79, 86 | 
| Conread position: | 18-422 | 
| Cow position: | chr3:2075422-2075000 (view UCSC Genome Browser custom track) | 
| Alignm length: | 425 | 
| Alignm identity: | 286 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 88, 79 | 
| Conread position: | 18-422 | 
| Cow position: | chr3:2573169-2572747 (view UCSC Genome Browser custom track) | 
| Alignm length: | 425 | 
| Alignm identity: | 288 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 79 | 
| Conread position: | 18-422 | 
| Cow position: | chr3:2833897-2834319 (view UCSC Genome Browser custom track) | 
| Alignm length: | 424 | 
| Alignm identity: | 285 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 125, 359 | 
| Conread position: | 18-422 | 
| Cow position: | chr3:6171113-6170691 (view UCSC Genome Browser custom track) | 
| Alignm length: | 425 | 
| Alignm identity: | 291 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 79 | 
| Conread position: | 18-422 | 
| Cow position: | chr3:6838674-6838249 (view UCSC Genome Browser custom track) | 
| Alignm length: | 428 | 
| Alignm identity: | 291 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 79 | 
| Conread position: | 18-422 | 
| Cow position: | chr3:11418188-11417766 (view UCSC Genome Browser custom track) | 
| Alignm length: | 424 | 
| Alignm identity: | 290 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 88, 79 | 
| Conread position: | 18-422 | 
| Cow position: | chr3:12932408-12931986 (view UCSC Genome Browser custom track) | 
| Alignm length: | 424 | 
| Alignm identity: | 287 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 79 | 
| Conread position: | 18-422 | 
| Cow position: | chr3:14213032-14212610 (view UCSC Genome Browser custom track) | 
| Alignm length: | 425 | 
| Alignm identity: | 290 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 79 | 
| Conread position: | 18-422 | 
| Cow position: | chr3:15417108-15416686 (view UCSC Genome Browser custom track) | 
| Alignm length: | 425 | 
| Alignm identity: | 287 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 79 | 
| Conread position: | 18-422 | 
| Cow position: | chr3:18863079-18862660 (view UCSC Genome Browser custom track) | 
| Alignm length: | 422 | 
| Alignm identity: | 290 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 79 | 
| Conread position: | 18-422 | 
| Cow position: | chr3:19881691-19881269 (view UCSC Genome Browser custom track) | 
| Alignm length: | 424 | 
| Alignm identity: | 288 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 79 | 
| Conread position: | 18-422 | 
| Cow position: | chr3:19959236-19958814 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 289 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 78, 87 | 
| Conread position: | 18-422 | 
| Cow position: | chr3:20795934-20795513 (view UCSC Genome Browser custom track) | 
| Alignm length: | 425 | 
| Alignm identity: | 283 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 88, 40 | 
| Conread position: | 18-422 | 
| Cow position: | chr3:21779136-21779558 (view UCSC Genome Browser custom track) | 
| Alignm length: | 424 | 
| Alignm identity: | 289 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 79 | 
| Conread position: | 18-422 | 
| Cow position: | chr3:26892132-26891710 (view UCSC Genome Browser custom track) | 
| Alignm length: | 424 | 
| Alignm identity: | 288 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 79 | 
| Conread position: | 18-422 | 
| Cow position: | chr3:30753224-30752803 (view UCSC Genome Browser custom track) | 
| Alignm length: | 422 | 
| Alignm identity: | 281 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 129, 0 | 
| Conread position: | 18-422 | 
| Cow position: | chr3:35043801-35043379 (view UCSC Genome Browser custom track) | 
| Alignm length: | 424 | 
| Alignm identity: | 290 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 79 | 
| Conread position: | 18-422 | 
| Cow position: | chr3:35109868-35109446 (view UCSC Genome Browser custom track) | 
| Alignm length: | 425 | 
| Alignm identity: | 288 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 89, 79 | 
| Conread position: | 18-422 | 
| Cow position: | chr3:39232353-39231931 (view UCSC Genome Browser custom track) | 
| Alignm length: | 424 | 
| Alignm identity: | 289 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 79 | 
| Conread position: | 18-422 | 
| Cow position: | chr3:41018669-41019094 (view UCSC Genome Browser custom track) | 
| Alignm length: | 427 | 
| Alignm identity: | 285 | 
| Alignm E-value: | 5.99756e-43 | 
| Alignm gaps (pig, cow): | 87, 79 | 
| Conread position: | 18-422 | 
| Cow position: | chr3:43525098-43525519 (view UCSC Genome Browser custom track) | 
| Alignm length: | 425 | 
| Alignm identity: | 282 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 89, 79 | 
| Conread position: | 18-422 | 
| Cow position: | chr3:47077971-47078393 (view UCSC Genome Browser custom track) | 
| Alignm length: | 425 | 
| Alignm identity: | 283 | 
| Alignm E-value: | 4.99983e-42 | 
| Alignm gaps (pig, cow): | 88, 79 | 
| Conread position: | 18-422 | 
| Cow position: | chr3:49610574-49610987 (view UCSC Genome Browser custom track) | 
| Alignm length: | 421 | 
| Alignm identity: | 288 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 88, 79 | 
| Conread position: | 18-422 | 
| Cow position: | chr3:56484613-56485040 (view UCSC Genome Browser custom track) | 
| Alignm length: | 430 | 
| Alignm identity: | 292 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 87, 79 | 
| Conread position: | 18-422 | 
| Cow position: | chr3:56697479-56697062 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 292 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 87, 79 | 
| Conread position: | 18-422 | 
| Cow position: | chr3:58336948-58336526 (view UCSC Genome Browser custom track) | 
| Alignm length: | 425 | 
| Alignm identity: | 291 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 79 | 
| Conread position: | 18-422 | 
| Cow position: | chr3:65536756-65536334 (view UCSC Genome Browser custom track) | 
| Alignm length: | 425 | 
| Alignm identity: | 289 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 79 | 
| Conread position: | 18-422 | 
| Cow position: | chr3:76865073-76864651 (view UCSC Genome Browser custom track) | 
| Alignm length: | 425 | 
| Alignm identity: | 293 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 79 | 
| Conread position: | 18-425 | 
| Cow position: | chr3:55129990-55129570 (view UCSC Genome Browser custom track) | 
| Alignm length: | 428 | 
| Alignm identity: | 287 | 
| Alignm E-value: | 4e-39 | 
| Alignm gaps (pig, cow): | 100, 12 | 
| Conread position: | 18-429 | 
| Cow position: | chr3:7739791-7740218 (view UCSC Genome Browser custom track) | 
| Alignm length: | 436 | 
| Alignm identity: | 283 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 87, 77 | 
| Conread position: | 18-430 | 
| Cow position: | chr3:70519663-70520077 (view UCSC Genome Browser custom track) | 
| Alignm length: | 432 | 
| Alignm identity: | 283 | 
| Alignm E-value: | 4e-29 | 
| Alignm gaps (pig, cow): | 126, 37 | 
| Conread position: | 18-442 | 
| Cow position: | chr3:18460047-18460496 (view UCSC Genome Browser custom track) | 
| Alignm length: | 453 | 
| Alignm identity: | 310 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 130, 16 | 
| Conread position: | 18-458 | 
| Cow position: | chr3:68888931-68889387 (view UCSC Genome Browser custom track) | 
| Alignm length: | 461 | 
| Alignm identity: | 302 | 
| Alignm E-value: | 1.99993e-41 | 
| Alignm gaps (pig, cow): | 129, 206 | 
| Conread position: | 18-460 | 
| Cow position: | chr3:12750527-12750082 (view UCSC Genome Browser custom track) | 
| Alignm length: | 463 | 
| Alignm identity: | 314 | 
| Alignm E-value: | 2.00386e-43 | 
| Alignm gaps (pig, cow): | 136, 45 | 
| Conread position: | 18-460 | 
| Cow position: | chr3:13034854-13035313 (view UCSC Genome Browser custom track) | 
| Alignm length: | 463 | 
| Alignm identity: | 312 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 79 | 
| Conread position: | 18-460 | 
| Cow position: | chr3:72174657-72175123 (view UCSC Genome Browser custom track) | 
| Alignm length: | 470 | 
| Alignm identity: | 324 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 77, 366 | 
| Conread position: | 18-469 | 
| Cow position: | chr3:2866013-2866480 (view UCSC Genome Browser custom track) | 
| Alignm length: | 473 | 
| Alignm identity: | 317 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 88, 79 | 
| Conread position: | 18-469 | 
| Cow position: | chr3:16226516-16226050 (view UCSC Genome Browser custom track) | 
| Alignm length: | 472 | 
| Alignm identity: | 313 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 88, 79 | 
| Conread position: | 18-469 | 
| Cow position: | chr3:19942524-19942067 (view UCSC Genome Browser custom track) | 
| Alignm length: | 473 | 
| Alignm identity: | 317 | 
| Alignm E-value: | 4.99983e-42 | 
| Alignm gaps (pig, cow): | 130, 241 | 
| Conread position: | 18-469 | 
| Cow position: | chr3:21593923-21593459 (view UCSC Genome Browser custom track) | 
| Alignm length: | 470 | 
| Alignm identity: | 312 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 79 | 
| Conread position: | 18-469 | 
| Cow position: | chr3:41057601-41057137 (view UCSC Genome Browser custom track) | 
| Alignm length: | 474 | 
| Alignm identity: | 325 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 79 | 
| Conread position: | 18-469 | 
| Cow position: | chr3:46683475-46683008 (view UCSC Genome Browser custom track) | 
| Alignm length: | 474 | 
| Alignm identity: | 318 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 79 | 
| Conread position: | 18-469 | 
| Cow position: | chr3:49564658-49564191 (view UCSC Genome Browser custom track) | 
| Alignm length: | 473 | 
| Alignm identity: | 319 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 129, 241 | 
| Conread position: | 18-469 | 
| Cow position: | chr3:49604805-49605267 (view UCSC Genome Browser custom track) | 
| Alignm length: | 469 | 
| Alignm identity: | 321 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 88, 79 | 
| Conread position: | 18-469 | 
| Cow position: | chr3:53047157-53047618 (view UCSC Genome Browser custom track) | 
| Alignm length: | 473 | 
| Alignm identity: | 327 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 57, 82 | 
| Conread position: | 18-469 | 
| Cow position: | chr3:64655846-64655385 (view UCSC Genome Browser custom track) | 
| Alignm length: | 472 | 
| Alignm identity: | 320 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 79 | 
| Conread position: | 18-469 | 
| Cow position: | chr3:65085575-65085109 (view UCSC Genome Browser custom track) | 
| Alignm length: | 474 | 
| Alignm identity: | 326 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 88, 79 | 
| Conread position: | 18-469 | 
| Cow position: | chr3:75771493-75771960 (view UCSC Genome Browser custom track) | 
| Alignm length: | 473 | 
| Alignm identity: | 322 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 88, 79 | 
| Conread position: | 18-482 | 
| Cow position: | chr3:13311357-13311844 (view UCSC Genome Browser custom track) | 
| Alignm length: | 494 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 98, 14 | 
| Conread position: | 18-482 | 
| Cow position: | chr3:52149644-52150126 (view UCSC Genome Browser custom track) | 
| Alignm length: | 487 | 
| Alignm identity: | 323 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 129, 359 | 
| Conread position: | 18-596 | 
| Cow position: | chr3:47691601-47691012 (view UCSC Genome Browser custom track) | 
| Alignm length: | 607 | 
| Alignm identity: | 401 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 112, 47 | 
| Conread position: | 18-660 | 
| Cow position: | chr3:66887551-66888239 (view UCSC Genome Browser custom track) | 
| Alignm length: | 694 | 
| Alignm identity: | 463 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 79, 246 | 
| Conread position: | 18-660 | 
| Cow position: | chr3:83767886-83767210 (view UCSC Genome Browser custom track) | 
| Alignm length: | 685 | 
| Alignm identity: | 462 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 79 | 
| Conread position: | 18-664 | 
| Cow position: | chr3:55374707-55374037 (view UCSC Genome Browser custom track) | 
| Alignm length: | 681 | 
| Alignm identity: | 463 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 79 | 
| Conread position: | 18-671 | 
| Cow position: | chr3:302863-302177 (view UCSC Genome Browser custom track) | 
| Alignm length: | 690 | 
| Alignm identity: | 472 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 129, 359 | 
| Conread position: | 18-671 | 
| Cow position: | chr3:19884095-19883415 (view UCSC Genome Browser custom track) | 
| Alignm length: | 689 | 
| Alignm identity: | 462 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 129, 47 | 
| Conread position: | 18-671 | 
| Cow position: | chr3:34503497-34504177 (view UCSC Genome Browser custom track) | 
| Alignm length: | 687 | 
| Alignm identity: | 475 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 79 | 
| Conread position: | 18-671 | 
| Cow position: | chr3:36121817-36121121 (view UCSC Genome Browser custom track) | 
| Alignm length: | 702 | 
| Alignm identity: | 471 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 88, 79 | 
| Conread position: | 19-460 | 
| Cow position: | chr3:46506412-46505951 (view UCSC Genome Browser custom track) | 
| Alignm length: | 468 | 
| Alignm identity: | 317 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 16, 88 | 
| Conread position: | 21-443 | 
| Cow position: | chr3:83289311-83289752 (view UCSC Genome Browser custom track) | 
| Alignm length: | 446 | 
| Alignm identity: | 300 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 126, 43 | 
| Conread position: | 21-459 | 
| Cow position: | chr3:44536342-44536804 (view UCSC Genome Browser custom track) | 
| Alignm length: | 472 | 
| Alignm identity: | 311 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 84, 33 | 
| Conread position: | 21-460 | 
| Cow position: | chr3:45675139-45675595 (view UCSC Genome Browser custom track) | 
| Alignm length: | 459 | 
| Alignm identity: | 307 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 126, 437 | 
| Conread position: | 21-460 | 
| Cow position: | chr3:48273423-48272964 (view UCSC Genome Browser custom track) | 
| Alignm length: | 468 | 
| Alignm identity: | 321 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 56, 14 | 
| Conread position: | 21-469 | 
| Cow position: | chr3:26742238-26742698 (view UCSC Genome Browser custom track) | 
| Alignm length: | 466 | 
| Alignm identity: | 314 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 126, 235 | 
| Conread position: | 21-540 | 
| Cow position: | chr3:16716204-16716751 (view UCSC Genome Browser custom track) | 
| Alignm length: | 554 | 
| Alignm identity: | 366 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 100, 13 | 
| Conread position: | 21-668 | 
| Cow position: | chr3:77550594-77549923 (view UCSC Genome Browser custom track) | 
| Alignm length: | 685 | 
| Alignm identity: | 452 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 210 | 
| Conread position: | 21-671 | 
| Cow position: | chr3:24265836-24265148 (view UCSC Genome Browser custom track) | 
| Alignm length: | 693 | 
| Alignm identity: | 461 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 123, 355 | 
| Conread position: | 22-428 | 
| Cow position: | chr3:57590962-57590552 (view UCSC Genome Browser custom track) | 
| Alignm length: | 423 | 
| Alignm identity: | 271 | 
| Alignm E-value: | 3e-26 | 
| Alignm gaps (pig, cow): | 126, 64 | 
| Conread position: | 22-439 | 
| Cow position: | chr3:39215013-39214574 (view UCSC Genome Browser custom track) | 
| Alignm length: | 442 | 
| Alignm identity: | 320 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 125, 168 | 
| Conread position: | 22-632 | 
| Cow position: | chr3:63219562-63218926 (view UCSC Genome Browser custom track) | 
| Alignm length: | 651 | 
| Alignm identity: | 441 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 63, 89 | 
| Conread position: | 22-671 | 
| Cow position: | chr3:49907397-49908077 (view UCSC Genome Browser custom track) | 
| Alignm length: | 688 | 
| Alignm identity: | 437 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 125, 353 | 
| Conread position: | 23-460 | 
| Cow position: | chr3:40049525-40049072 (view UCSC Genome Browser custom track) | 
| Alignm length: | 458 | 
| Alignm identity: | 311 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 82, 74 | 
| Conread position: | 24-393 | 
| Cow position: | chr3:45608482-45608096 (view UCSC Genome Browser custom track) | 
| Alignm length: | 395 | 
| Alignm identity: | 265 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 35, 46 | 
| Conread position: | 24-426 | 
| Cow position: | chr3:51256574-51256151 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 289 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 83, 73 | 
| Conread position: | 26-422 | 
| Cow position: | chr3:22919154-22918742 (view UCSC Genome Browser custom track) | 
| Alignm length: | 419 | 
| Alignm identity: | 288 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 51, 217 | 
| Conread position: | 30-423 | 
| Cow position: | chr3:35919189-35918778 (view UCSC Genome Browser custom track) | 
| Alignm length: | 413 | 
| Alignm identity: | 274 | 
| Alignm E-value: | 1.99993e-41 | 
| Alignm gaps (pig, cow): | 117, 347 | 
| Conread position: | 34-460 | 
| Cow position: | chr3:24639026-24638599 (view UCSC Genome Browser custom track) | 
| Alignm length: | 446 | 
| Alignm identity: | 298 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 63, 9 | 
| Conread position: | 35-419 | 
| Cow position: | chr3:80564423-80564018 (view UCSC Genome Browser custom track) | 
| Alignm length: | 408 | 
| Alignm identity: | 276 | 
| Alignm E-value: | 5.99756e-43 | 
| Alignm gaps (pig, cow): | 113, 223 | 
| Conread position: | 35-465 | 
| Cow position: | chr3:73763012-73763452 (view UCSC Genome Browser custom track) | 
| Alignm length: | 447 | 
| Alignm identity: | 304 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 113, 220 | 
| Conread position: | 35-469 | 
| Cow position: | chr3:579797-579349 (view UCSC Genome Browser custom track) | 
| Alignm length: | 455 | 
| Alignm identity: | 302 | 
| Alignm E-value: | 1.99965e-42 | 
| Alignm gaps (pig, cow): | 109, 342 | 
| Conread position: | 35-659 | 
| Cow position: | chr3:42507589-42508251 (view UCSC Genome Browser custom track) | 
| Alignm length: | 671 | 
| Alignm identity: | 439 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 113, 342 | 
| Conread position: | 35-671 | 
| Cow position: | chr3:6897446-6896774 (view UCSC Genome Browser custom track) | 
| Alignm length: | 682 | 
| Alignm identity: | 467 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 113, 28 | 
| Conread position: | 35-671 | 
| Cow position: | chr3:20780836-20781476 (view UCSC Genome Browser custom track) | 
| Alignm length: | 659 | 
| Alignm identity: | 446 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 70, 62 | 
| Conread position: | 36-606 | 
| Cow position: | chr3:52256896-52257504 (view UCSC Genome Browser custom track) | 
| Alignm length: | 615 | 
| Alignm identity: | 410 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 109, 85 | 
| Conread position: | 37-393 | 
| Cow position: | chr3:77366091-77366458 (view UCSC Genome Browser custom track) | 
| Alignm length: | 374 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 2.00386e-43 | 
| Alignm gaps (pig, cow): | 69, 21 | 
| Conread position: | 38-422 | 
| Cow position: | chr3:55246165-55245763 (view UCSC Genome Browser custom track) | 
| Alignm length: | 404 | 
| Alignm identity: | 275 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 67, 59 | 
| Conread position: | 39-460 | 
| Cow position: | chr3:7678111-7677674 (view UCSC Genome Browser custom track) | 
| Alignm length: | 445 | 
| Alignm identity: | 305 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 82, 14 | 
| Conread position: | 39-660 | 
| Cow position: | chr3:35612767-35612111 (view UCSC Genome Browser custom track) | 
| Alignm length: | 665 | 
| Alignm identity: | 452 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 108, 93 | 
| Conread position: | 40-425 | 
| Cow position: | chr3:51478318-51477909 (view UCSC Genome Browser custom track) | 
| Alignm length: | 412 | 
| Alignm identity: | 272 | 
| Alignm E-value: | 6e-32 | 
| Alignm gaps (pig, cow): | 107, 217 | 
| Conread position: | 40-443 | 
| Cow position: | chr3:18758786-18759223 (view UCSC Genome Browser custom track) | 
| Alignm length: | 441 | 
| Alignm identity: | 307 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 194 | 
| Conread position: | 47-422 | 
| Cow position: | chr3:48528637-48528246 (view UCSC Genome Browser custom track) | 
| Alignm length: | 397 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 101, 79 | 
| Conread position: | 63-441 | 
| Cow position: | chr3:6689410-6689028 (view UCSC Genome Browser custom track) | 
| Alignm length: | 386 | 
| Alignm identity: | 278 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 42, 34 | 
| Conread position: | 63-580 | 
| Cow position: | chr3:16657276-16657829 (view UCSC Genome Browser custom track) | 
| Alignm length: | 558 | 
| Alignm identity: | 374 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 483 | 
| Conread position: | 66-440 | 
| Cow position: | chr3:46349805-46349428 (view UCSC Genome Browser custom track) | 
| Alignm length: | 384 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 165, 94 | 
| Conread position: | 70-671 | 
| Cow position: | chr3:16883743-16884351 (view UCSC Genome Browser custom track) | 
| Alignm length: | 627 | 
| Alignm identity: | 406 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 78, 169 | 
| Conread position: | 103-671 | 
| Cow position: | chr3:2365360-2365951 (view UCSC Genome Browser custom track) | 
| Alignm length: | 608 | 
| Alignm identity: | 413 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 45, 92 | 
| Conread position: | 104-469 | 
| Cow position: | chr3:4039380-4039756 (view UCSC Genome Browser custom track) | 
| Alignm length: | 385 | 
| Alignm identity: | 273 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 44, 149 | 
| Conread position: | 106-643 | 
| Cow position: | chr3:67466322-67466884 (view UCSC Genome Browser custom track) | 
| Alignm length: | 575 | 
| Alignm identity: | 386 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 37, 41 | 
| Conread position: | 107-460 | 
| Cow position: | chr3:29391579-29391937 (view UCSC Genome Browser custom track) | 
| Alignm length: | 368 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 1e-37 | 
| Alignm gaps (pig, cow): | 41, 128 | 
| Conread position: | 110-460 | 
| Cow position: | chr3:14724642-14724302 (view UCSC Genome Browser custom track) | 
| Alignm length: | 354 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 143, 55 | 
| Conread position: | 126-422 | 
| Cow position: | chr3:18253053-18252767 (view UCSC Genome Browser custom track) | 
| Alignm length: | 299 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 1e-37 | 
| Alignm gaps (pig, cow): | 22, 39 | 
| Conread position: | 129-460 | 
| Cow position: | chr3:68042992-68043322 (view UCSC Genome Browser custom track) | 
| Alignm length: | 335 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 7.00649e-45 | 
| Alignm gaps (pig, cow): | 90, 113 | 
| Conread position: | 158-353 | 
| Cow position: | chr3:61466290-61466493 (view UCSC Genome Browser custom track) | 
| Alignm length: | 204 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 23, 0 | 
| Conread position: | 158-355 | 
| Cow position: | chr3:54959219-54959020 (view UCSC Genome Browser custom track) | 
| Alignm length: | 203 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 27, 84 | 
| Conread position: | 158-373 | 
| Cow position: | chr3:12785077-12785295 (view UCSC Genome Browser custom track) | 
| Alignm length: | 219 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 31, 0 | 
| Conread position: | 158-376 | 
| Cow position: | chr3:49121065-49121280 (view UCSC Genome Browser custom track) | 
| Alignm length: | 223 | 
| Alignm identity: | 156 | 
| Alignm E-value: | 3e-25 | 
| Alignm gaps (pig, cow): | 30, 74 | 
| Conread position: | 158-383 | 
| Cow position: | chr3:11334377-11334603 (view UCSC Genome Browser custom track) | 
| Alignm length: | 231 | 
| Alignm identity: | 170 | 
| Alignm E-value: | 3e-35 | 
| Alignm gaps (pig, cow): | 30, 87 | 
| Conread position: | 158-383 | 
| Cow position: | chr3:73765162-73765390 (view UCSC Genome Browser custom track) | 
| Alignm length: | 230 | 
| Alignm identity: | 165 | 
| Alignm E-value: | 7e-34 | 
| Alignm gaps (pig, cow): | 52, 86 | 
| Conread position: | 158-416 | 
| Cow position: | chr3:16789332-16789081 (view UCSC Genome Browser custom track) | 
| Alignm length: | 261 | 
| Alignm identity: | 176 | 
| Alignm E-value: | 3e-26 | 
| Alignm gaps (pig, cow): | 137, 70 | 
| Conread position: | 158-422 | 
| Cow position: | chr3:822603-822870 (view UCSC Genome Browser custom track) | 
| Alignm length: | 269 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 6e-33 | 
| Alignm gaps (pig, cow): | 30, 204 | 
| Conread position: | 158-422 | 
| Cow position: | chr3:6024372-6024639 (view UCSC Genome Browser custom track) | 
| Alignm length: | 268 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 4.99997e-41 | 
| Alignm gaps (pig, cow): | 30, 0 | 
| Conread position: | 158-422 | 
| Cow position: | chr3:6529479-6529212 (view UCSC Genome Browser custom track) | 
| Alignm length: | 269 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 1e-37 | 
| Alignm gaps (pig, cow): | 30, 204 | 
| Conread position: | 158-422 | 
| Cow position: | chr3:18886944-18886677 (view UCSC Genome Browser custom track) | 
| Alignm length: | 269 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 86 | 
| Conread position: | 158-422 | 
| Cow position: | chr3:20074574-20074307 (view UCSC Genome Browser custom track) | 
| Alignm length: | 268 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 4.99983e-42 | 
| Alignm gaps (pig, cow): | 30, 0 | 
| Conread position: | 158-422 | 
| Cow position: | chr3:30351762-30351495 (view UCSC Genome Browser custom track) | 
| Alignm length: | 269 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 27, 204 | 
| Conread position: | 158-438 | 
| Cow position: | chr3:2507155-2507438 (view UCSC Genome Browser custom track) | 
| Alignm length: | 286 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 2.00386e-43 | 
| Alignm gaps (pig, cow): | 29, 68 | 
| Conread position: | 158-442 | 
| Cow position: | chr3:4017999-4017701 (view UCSC Genome Browser custom track) | 
| Alignm length: | 299 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 27, 0 | 
| Conread position: | 158-458 | 
| Cow position: | chr3:62157087-62156782 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 6e-33 | 
| Alignm gaps (pig, cow): | 26, 171 | 
| Conread position: | 158-460 | 
| Cow position: | chr3:34015898-34015594 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 4e-39 | 
| Alignm gaps (pig, cow): | 30, 204 | 
| Conread position: | 158-469 | 
| Cow position: | chr3:6865136-6864833 (view UCSC Genome Browser custom track) | 
| Alignm length: | 318 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 29, 67 | 
| Conread position: | 158-469 | 
| Cow position: | chr3:20999585-20999897 (view UCSC Genome Browser custom track) | 
| Alignm length: | 318 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 7.00649e-44 | 
| Alignm gaps (pig, cow): | 30, 86 | 
| Conread position: | 158-469 | 
| Cow position: | chr3:56103223-56102914 (view UCSC Genome Browser custom track) | 
| Alignm length: | 314 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 80 | 
| Conread position: | 158-482 | 
| Cow position: | chr3:33254376-33254700 (view UCSC Genome Browser custom track) | 
| Alignm length: | 330 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 86 | 
| Conread position: | 158-482 | 
| Cow position: | chr3:40826883-40826556 (view UCSC Genome Browser custom track) | 
| Alignm length: | 333 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 86 | 
| Conread position: | 158-596 | 
| Cow position: | chr3:40004023-40004457 (view UCSC Genome Browser custom track) | 
| Alignm length: | 455 | 
| Alignm identity: | 308 | 
| Alignm E-value: | 5.99756e-43 | 
| Alignm gaps (pig, cow): | 30, 176 | 
| Conread position: | 158-597 | 
| Cow position: | chr3:47340650-47341090 (view UCSC Genome Browser custom track) | 
| Alignm length: | 451 | 
| Alignm identity: | 300 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 340 | 
| Conread position: | 158-660 | 
| Cow position: | chr3:81101565-81101036 (view UCSC Genome Browser custom track) | 
| Alignm length: | 535 | 
| Alignm identity: | 367 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 86 | 
| Conread position: | 158-671 | 
| Cow position: | chr3:16293430-16293963 (view UCSC Genome Browser custom track) | 
| Alignm length: | 537 | 
| Alignm identity: | 372 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 285 | 
| Conread position: | 158-671 | 
| Cow position: | chr3:19824580-19825094 (view UCSC Genome Browser custom track) | 
| Alignm length: | 524 | 
| Alignm identity: | 346 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 87 | 
| Conread position: | 160-428 | 
| Cow position: | chr3:26787484-26787224 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 7e-24 | 
| Alignm gaps (pig, cow): | 28, 83 | 
| Conread position: | 160-671 | 
| Cow position: | chr3:7856906-7856371 (view UCSC Genome Browser custom track) | 
| Alignm length: | 540 | 
| Alignm identity: | 353 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 25, 84 | 
| Conread position: | 163-608 | 
| Cow position: | chr3:68343874-68344315 (view UCSC Genome Browser custom track) | 
| Alignm length: | 459 | 
| Alignm identity: | 316 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 247, 75 | 
| Conread position: | 165-469 | 
| Cow position: | chr3:15988417-15988114 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 53 | 
| Conread position: | 168-375 | 
| Cow position: | chr3:36570959-36571168 (view UCSC Genome Browser custom track) | 
| Alignm length: | 212 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 17, 76 | 
| Conread position: | 168-422 | 
| Cow position: | chr3:12665614-12665357 (view UCSC Genome Browser custom track) | 
| Alignm length: | 259 | 
| Alignm identity: | 182 | 
| Alignm E-value: | 9e-37 | 
| Alignm gaps (pig, cow): | 20, 194 | 
| Conread position: | 168-455 | 
| Cow position: | chr3:13723235-13723524 (view UCSC Genome Browser custom track) | 
| Alignm length: | 294 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 21, 165 | 
| Conread position: | 168-556 | 
| Cow position: | chr3:77697006-77697386 (view UCSC Genome Browser custom track) | 
| Alignm length: | 398 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 20, 124 | 
| Conread position: | 169-427 | 
| Cow position: | chr3:37040757-37040503 (view UCSC Genome Browser custom track) | 
| Alignm length: | 264 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 5e-31 | 
| Alignm gaps (pig, cow): | 19, 57 | 
| Conread position: | 175-458 | 
| Cow position: | chr3:58129555-58129276 (view UCSC Genome Browser custom track) | 
| Alignm length: | 285 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 247, 71 | 
| Conread position: | 175-671 | 
| Cow position: | chr3:47986909-47986387 (view UCSC Genome Browser custom track) | 
| Alignm length: | 528 | 
| Alignm identity: | 357 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 268 | 
| Conread position: | 177-426 | 
| Cow position: | chr3:71246067-71245810 (view UCSC Genome Browser custom track) | 
| Alignm length: | 259 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 56, 6 | 
| Conread position: | 183-369 | 
| Cow position: | chr3:523663-523481 (view UCSC Genome Browser custom track) | 
| Alignm length: | 188 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 4e-29 | 
| Alignm gaps (pig, cow): | 182, 66 | 
| Conread position: | 183-373 | 
| Cow position: | chr3:58027241-58027431 (view UCSC Genome Browser custom track) | 
| Alignm length: | 191 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 183-383 | 
| Cow position: | chr3:52010239-52010439 (view UCSC Genome Browser custom track) | 
| Alignm length: | 201 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 183-422 | 
| Cow position: | chr3:28471808-28471573 (view UCSC Genome Browser custom track) | 
| Alignm length: | 241 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 3e-35 | 
| Alignm gaps (pig, cow): | 153, 104 | 
| Conread position: | 183-422 | 
| Cow position: | chr3:36595157-36594918 (view UCSC Genome Browser custom track) | 
| Alignm length: | 241 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 8e-35 | 
| Alignm gaps (pig, cow): | 147, 176 | 
| Conread position: | 183-429 | 
| Cow position: | chr3:56919525-56919280 (view UCSC Genome Browser custom track) | 
| Alignm length: | 250 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 8e-25 | 
| Alignm gaps (pig, cow): | 141, 65 | 
| Conread position: | 183-469 | 
| Cow position: | chr3:19794638-19794917 (view UCSC Genome Browser custom track) | 
| Alignm length: | 288 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 243, 40 | 
| Conread position: | 183-469 | 
| Cow position: | chr3:64876231-64875948 (view UCSC Genome Browser custom track) | 
| Alignm length: | 290 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 1e-37 | 
| Alignm gaps (pig, cow): | 70, 58 | 
| Conread position: | 183-634 | 
| Cow position: | chr3:53924217-53924691 (view UCSC Genome Browser custom track) | 
| Alignm length: | 480 | 
| Alignm identity: | 309 | 
| Alignm E-value: | 6e-32 | 
| Alignm gaps (pig, cow): | 52, 194 | 
| Conread position: | 183-671 | 
| Cow position: | chr3:55454590-55455086 (view UCSC Genome Browser custom track) | 
| Alignm length: | 507 | 
| Alignm identity: | 345 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 285 | 
| Conread position: | 183-671 | 
| Cow position: | chr3:64698252-64697778 (view UCSC Genome Browser custom track) | 
| Alignm length: | 505 | 
| Alignm identity: | 357 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 72, 42 | 
| Conread position: | 185-460 | 
| Cow position: | chr3:49931292-49931018 (view UCSC Genome Browser custom track) | 
| Alignm length: | 277 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 8e-36 | 
| Alignm gaps (pig, cow): | 231, 255 | 
Show alignments to all cow chromosomes.
