Cow genome map

Conread name: rnje10c_n3.y1

Conread position: 1-486
Cow position: chr5:62436683-62436185 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 267

Conread position: 2-321
Cow position: chr5:70249689-70249358 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 233
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 105, 89

Conread position: 2-323
Cow position: chr5:29827591-29827249 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 230
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 89, 238

Conread position: 2-327
Cow position: chr5:34584631-34584965 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 226
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 97, 102

Conread position: 2-343
Cow position: chr5:31145238-31145592 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 242
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 103, 61

Conread position: 2-345
Cow position: chr5:26402274-26402617 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 232
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 20, 29

Conread position: 2-352
Cow position: chr5:46295134-46295490 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 237
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 93, 147

Conread position: 2-368
Cow position: chr5:72345280-72345663 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 61

Conread position: 2-400
Cow position: chr5:25495848-25496262 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 265

Conread position: 2-407
Cow position: chr5:36724181-36724584 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 61

Conread position: 2-409
Cow position: chr5:411157-411581 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 42

Conread position: 2-419
Cow position: chr5:3204392-3203966 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 300
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 36, 32

Conread position: 2-419
Cow position: chr5:39936665-39936228 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 95

Conread position: 2-422
Cow position: chr5:14551040-14551476 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 84

Conread position: 2-422
Cow position: chr5:29969171-29968733 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 257

Conread position: 2-422
Cow position: chr5:59303744-59304160 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 81

Conread position: 2-425
Cow position: chr5:16206604-16207035 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 293
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 103, 72

Conread position: 2-427
Cow position: chr5:51502436-51502005 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 66

Conread position: 2-429
Cow position: chr5:50064097-50063662 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 297
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 124, 158

Conread position: 2-437
Cow position: chr5:14557892-14558349 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 95

Conread position: 2-437
Cow position: chr5:59268982-59268526 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 377

Conread position: 2-442
Cow position: chr5:34559697-34559251 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 61

Conread position: 2-451
Cow position: chr5:8996462-8996912 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 297
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 18, 12

Conread position: 2-460
Cow position: chr5:279617-280091 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 102

Conread position: 2-460
Cow position: chr5:3500569-3501040 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 130

Conread position: 2-460
Cow position: chr5:7042788-7042330 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 307
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 146, 64

Conread position: 2-460
Cow position: chr5:24087487-24087962 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 257

Conread position: 2-460
Cow position: chr5:53184941-53185413 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 95

Conread position: 2-469
Cow position: chr5:1338361-1338841 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 254

Conread position: 2-469
Cow position: chr5:3544858-3544388 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 130

Conread position: 2-469
Cow position: chr5:7498422-7498905 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 95

Conread position: 2-469
Cow position: chr5:10922408-10921925 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 33

Conread position: 2-469
Cow position: chr5:24102213-24101730 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 255

Conread position: 2-469
Cow position: chr5:24299576-24299093 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 257

Conread position: 2-469
Cow position: chr5:25926874-25927358 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 249

Conread position: 2-469
Cow position: chr5:34709330-34708849 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 81

Conread position: 2-469
Cow position: chr5:35207799-35207322 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 95

Conread position: 2-469
Cow position: chr5:49116790-49117271 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 27

Conread position: 2-469
Cow position: chr5:58770309-58770791 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 95

Conread position: 2-469
Cow position: chr5:73485325-73485806 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 255

Conread position: 2-482
Cow position: chr5:7175861-7175363 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 92

Conread position: 2-482
Cow position: chr5:64778443-64778937 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 116

Conread position: 2-630
Cow position: chr5:27548951-27549598 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 95

Conread position: 2-652
Cow position: chr5:5715525-5716184 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 258

Conread position: 2-660
Cow position: chr5:10853272-10853968 (view UCSC Genome Browser custom track)
Alignm length: 704
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 45

Conread position: 2-660
Cow position: chr5:21189780-21189083 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 256

Conread position: 2-660
Cow position: chr5:48804907-48805588 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 257

Conread position: 2-660
Cow position: chr5:49522264-49521572 (view UCSC Genome Browser custom track)
Alignm length: 701
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 95

Conread position: 2-660
Cow position: chr5:55631627-55630926 (view UCSC Genome Browser custom track)
Alignm length: 708
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 57

Conread position: 2-670
Cow position: chr5:59575-60294 (view UCSC Genome Browser custom track)
Alignm length: 724
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 95

Conread position: 2-671
Cow position: chr5:5937862-5937158 (view UCSC Genome Browser custom track)
Alignm length: 712
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 122

Conread position: 3-469
Cow position: chr5:58245893-58245412 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 322
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 35, 27

Conread position: 3-482
Cow position: chr5:56442819-56442324 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 329
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 116, 234

Conread position: 4-420
Cow position: chr5:7553318-7552894 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 56

Conread position: 4-429
Cow position: chr5:11955957-11956378 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 279
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 132, 43

Conread position: 5-422
Cow position: chr5:46816544-46816977 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 293
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 101, 84

Conread position: 5-422
Cow position: chr5:59065003-59064569 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 92

Conread position: 5-671
Cow position: chr5:6455103-6455812 (view UCSC Genome Browser custom track)
Alignm length: 715
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 92

Conread position: 9-420
Cow position: chr5:28677903-28678324 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 276
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 130, 61

Conread position: 17-671
Cow position: chr5:18118427-18119124 (view UCSC Genome Browser custom track)
Alignm length: 702
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 360

Conread position: 18-328
Cow position: chr5:57987039-57986714 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 207
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 129, 238

Conread position: 18-364
Cow position: chr5:4041684-4041320 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 240
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 89, 79

Conread position: 18-377
Cow position: chr5:49103371-49102994 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 252
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 87, 79

Conread position: 18-378
Cow position: chr5:19780486-19780866 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 262
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 59, 80

Conread position: 18-383
Cow position: chr5:43350341-43349958 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 260
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 88, 79

Conread position: 18-390
Cow position: chr5:52645796-52646183 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 259
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 130, 223

Conread position: 18-401
Cow position: chr5:39216802-39216401 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 267
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 129, 359

Conread position: 18-402
Cow position: chr5:68273302-68273704 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 271
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 87, 79

Conread position: 18-417
Cow position: chr5:31709838-31709430 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 350

Conread position: 18-422
Cow position: chr5:442762-443184 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 286
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 129, 206

Conread position: 18-422
Cow position: chr5:1059020-1059442 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 285
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 88, 79

Conread position: 18-422
Cow position: chr5:11631438-11631860 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 282
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 129, 359

Conread position: 18-422
Cow position: chr5:20107485-20107902 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 285
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 88, 79

Conread position: 18-422
Cow position: chr5:26053278-26052856 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 79

Conread position: 18-422
Cow position: chr5:28013404-28012982 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 79

Conread position: 18-422
Cow position: chr5:29634976-29634554 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 79

Conread position: 18-422
Cow position: chr5:36369445-36369867 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 86

Conread position: 18-422
Cow position: chr5:41586821-41586399 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 79

Conread position: 18-422
Cow position: chr5:50728849-50728435 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 290
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 87, 60

Conread position: 18-422
Cow position: chr5:53075323-53075745 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 79

Conread position: 18-422
Cow position: chr5:54927379-54927794 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 284
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 129, 67

Conread position: 18-422
Cow position: chr5:54929707-54930122 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 284
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 129, 67

Conread position: 18-422
Cow position: chr5:54951570-54951997 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 290
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 129, 211

Conread position: 18-422
Cow position: chr5:57335817-57336239 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 359

Conread position: 18-422
Cow position: chr5:58900497-58900919 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 79

Conread position: 18-432
Cow position: chr5:10839931-10840348 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 279
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 129, 37

Conread position: 18-442
Cow position: chr5:34669548-34669985 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 242

Conread position: 18-460
Cow position: chr5:4753587-4754045 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 358

Conread position: 18-460
Cow position: chr5:14636032-14636490 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 79

Conread position: 18-460
Cow position: chr5:42283710-42283258 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 307
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 90, 79

Conread position: 18-460
Cow position: chr5:43984630-43984172 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 109

Conread position: 18-460
Cow position: chr5:54337446-54336990 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 79

Conread position: 18-465
Cow position: chr5:21188478-21188018 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 79

Conread position: 18-465
Cow position: chr5:27906921-27907378 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 307
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 129, 241

Conread position: 18-469
Cow position: chr5:1383520-1383061 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 315
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 87, 79

Conread position: 18-469
Cow position: chr5:5106769-5106304 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 79

Conread position: 18-469
Cow position: chr5:6124616-6125082 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 79

Conread position: 18-469
Cow position: chr5:10772283-10772745 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 311
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 129, 360

Conread position: 18-469
Cow position: chr5:15677603-15677141 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 238

Conread position: 18-469
Cow position: chr5:34682816-34683280 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 86

Conread position: 18-469
Cow position: chr5:45179302-45179766 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 79

Conread position: 18-469
Cow position: chr5:55723076-55722609 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 79

Conread position: 18-469
Cow position: chr5:75754577-75755039 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 314
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 129, 241

Conread position: 18-482
Cow position: chr5:4682954-4683435 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 79

Conread position: 18-482
Cow position: chr5:72857423-72856939 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 327
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 100, 207

Conread position: 18-658
Cow position: chr5:29255667-29256347 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 241

Conread position: 18-660
Cow position: chr5:46677157-46676475 (view UCSC Genome Browser custom track)
Alignm length: 687
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 70

Conread position: 18-662
Cow position: chr5:16909371-16910016 (view UCSC Genome Browser custom track)
Alignm length: 665
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 25

Conread position: 18-670
Cow position: chr5:57125551-57124872 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 244

Conread position: 18-671
Cow position: chr5:446026-445368 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 79

Conread position: 18-671
Cow position: chr5:6773112-6772419 (view UCSC Genome Browser custom track)
Alignm length: 701
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 79

Conread position: 18-671
Cow position: chr5:12134140-12133448 (view UCSC Genome Browser custom track)
Alignm length: 701
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 241

Conread position: 18-671
Cow position: chr5:15760829-15761518 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 86

Conread position: 18-671
Cow position: chr5:41067546-41066876 (view UCSC Genome Browser custom track)
Alignm length: 680
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 144

Conread position: 18-671
Cow position: chr5:46667618-46666925 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 79

Conread position: 20-460
Cow position: chr5:23753829-23754263 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 310
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 116, 14

Conread position: 21-407
Cow position: chr5:38663265-38662865 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 262
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 78, 83

Conread position: 21-417
Cow position: chr5:12872996-12872576 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 282
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 127, 82

Conread position: 21-420
Cow position: chr5:42044382-42043976 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 207

Conread position: 21-428
Cow position: chr5:51746762-51746337 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 238

Conread position: 21-435
Cow position: chr5:4388722-4388287 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 286
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 127, 76

Conread position: 21-458
Cow position: chr5:7192964-7192521 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 297
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 16, 8

Conread position: 21-671
Cow position: chr5:27179178-27178503 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 116

Conread position: 22-419
Cow position: chr5:18702896-18703300 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 284
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 126, 233

Conread position: 22-422
Cow position: chr5:37380627-37380211 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 280
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 83, 61

Conread position: 22-422
Cow position: chr5:52040950-52041359 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 41

Conread position: 22-422
Cow position: chr5:59147150-59146733 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 75

Conread position: 22-469
Cow position: chr5:58192458-58191998 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 302
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 77, 82

Conread position: 22-671
Cow position: chr5:48026810-48026121 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 36

Conread position: 23-492
Cow position: chr5:49220955-49221437 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 333
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 60, 238

Conread position: 28-428
Cow position: chr5:48408921-48409330 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 225

Conread position: 29-443
Cow position: chr5:10261732-10262174 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 293
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 70, 75

Conread position: 30-459
Cow position: chr5:19978378-19978825 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 67

Conread position: 30-653
Cow position: chr5:23828659-23829306 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 93

Conread position: 34-285
Cow position: chr5:38831750-38831479 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 187
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 43, 0

Conread position: 35-419
Cow position: chr5:28016584-28016184 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 270
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 113, 43

Conread position: 35-529
Cow position: chr5:41980914-41980410 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 38

Conread position: 40-412
Cow position: chr5:16124994-16125381 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 262
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 48, 75

Conread position: 48-469
Cow position: chr5:43991788-43991362 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 42

Conread position: 65-460
Cow position: chr5:27691482-27691077 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 286
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 56, 196

Conread position: 72-650
Cow position: chr5:15122809-15123410 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 397
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 33, 169

Conread position: 77-460
Cow position: chr5:76098543-76098942 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 270
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 28, 13

Conread position: 77-632
Cow position: chr5:41548071-41548644 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 385
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 28, 20

Conread position: 78-372
Cow position: chr5:40891006-40891309 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 214
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 70, 33

Conread position: 103-313
Cow position: chr5:69098834-69098615 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 153
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 45, 82

Conread position: 103-369
Cow position: chr5:65600687-65600408 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 198
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 45, 138

Conread position: 103-422
Cow position: chr5:4348553-4348863 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 220
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 45, 144

Conread position: 115-422
Cow position: chr5:17425717-17426025 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 220
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 24, 29

Conread position: 116-422
Cow position: chr5:41489103-41488795 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 186
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 73, 169

Conread position: 117-428
Cow position: chr5:19419996-19420298 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 207
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 72, 7

Conread position: 135-671
Cow position: chr5:4630178-4629621 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 33

Conread position: 148-660
Cow position: chr5:57970142-57969646 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 317
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 32, 8

Conread position: 157-428
Cow position: chr5:70348801-70348522 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 195
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 19, 107

Conread position: 158-342
Cow position: chr5:32339579-32339774 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 140
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 24, 0

Conread position: 158-380
Cow position: chr5:27058247-27058472 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 154
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 30, 0

Conread position: 158-382
Cow position: chr5:32141143-32141376 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 164
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 32, 0

Conread position: 158-388
Cow position: chr5:54868608-54868375 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 173
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 30, 86

Conread position: 158-392
Cow position: chr5:19470864-19471107 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 175
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 30, 86

Conread position: 158-396
Cow position: chr5:54360729-54360970 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 163
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 30, 0

Conread position: 158-420
Cow position: chr5:34886285-34886539 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 185
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 30, 82

Conread position: 158-422
Cow position: chr5:295653-295390 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 191
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 30, 132

Conread position: 158-422
Cow position: chr5:4434112-4434379 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 187
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 30, 204

Conread position: 158-422
Cow position: chr5:6694926-6694659 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 190
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 30, 204

Conread position: 158-422
Cow position: chr5:10066158-10066425 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 185
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 30, 204

Conread position: 158-422
Cow position: chr5:18667699-18667432 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 189
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 26, 204

Conread position: 158-422
Cow position: chr5:67814254-67813987 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 188
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 30, 0

Conread position: 158-429
Cow position: chr5:28037473-28037210 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 188
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 229, 65

Conread position: 158-439
Cow position: chr5:66278815-66278541 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 197
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 30, 17

Conread position: 158-441
Cow position: chr5:4166016-4165737 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 8

Conread position: 158-441
Cow position: chr5:40827987-40828274 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 161

Conread position: 158-451
Cow position: chr5:58199401-58199105 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 203
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 30, 204

Conread position: 158-460
Cow position: chr5:30302224-30301940 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 217
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 28, 68

Conread position: 158-460
Cow position: chr5:44617537-44617233 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 216
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 30, 204

Conread position: 158-469
Cow position: chr5:8178526-8178214 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 224
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 23, 86

Conread position: 158-469
Cow position: chr5:46734887-46735196 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 224
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 27, 84

Conread position: 158-648
Cow position: chr5:47855218-47854709 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 68

Conread position: 158-651
Cow position: chr5:29763299-29762794 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 86

Conread position: 158-662
Cow position: chr5:64009328-64009834 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 96

Conread position: 158-669
Cow position: chr5:33775392-33775914 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 127

Conread position: 158-671
Cow position: chr5:37735767-37735227 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 86

Conread position: 159-351
Cow position: chr5:28700546-28700734 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 142
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 29, 95

Conread position: 159-460
Cow position: chr5:41603669-41603369 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 81

Conread position: 159-633
Cow position: chr5:70603966-70603490 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 317
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 25, 92

Conread position: 164-442
Cow position: chr5:15362423-15362148 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 204
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 24, 80

Conread position: 166-425
Cow position: chr5:51684236-51684493 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 195
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 22, 60

Conread position: 166-482
Cow position: chr5:27195678-27195995 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 222
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 22, 167

Conread position: 168-422
Cow position: chr5:12212916-12212658 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 183
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 20, 0

Conread position: 168-425
Cow position: chr5:58461314-58461571 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 185
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 20, 58

Conread position: 168-469
Cow position: chr5:7396625-7396328 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 221
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 17, 76

Conread position: 168-660
Cow position: chr5:54125448-54124962 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 17

Conread position: 171-422
Cow position: chr5:12337652-12337399 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 180
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 17, 73

Conread position: 171-422
Cow position: chr5:32755072-32755325 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 187
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 17, 73

Conread position: 174-422
Cow position: chr5:7277242-7276992 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 167
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 84, 9

Conread position: 174-577
Cow position: chr5:75755955-75755531 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 147

Conread position: 177-442
Cow position: chr5:30294666-30294412 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 192
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 139, 6

Conread position: 181-413
Cow position: chr5:31503517-31503279 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 176
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 46, 174

Conread position: 183-352
Cow position: chr5:30050570-30050747 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 44, 0

Conread position: 183-352
Cow position: chr5:57933874-57934043 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 128
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 56, 68

Conread position: 183-355
Cow position: chr5:25253762-25253592 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 126
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 162, 40

Conread position: 183-404
Cow position: chr5:48832742-48832530 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 155
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 75, 40

Conread position: 183-466
Cow position: chr5:3695696-3695427 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 197
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 241, 55

Conread position: 183-469
Cow position: chr5:32810666-32810946 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 205
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 70, 58

Conread position: 183-472
Cow position: chr5:23354104-23353817 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 201
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 70, 58

Conread position: 192-460
Cow position: chr5:50923491-50923756 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 191
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 61, 49

Conread position: 198-489
Cow position: chr5:12558228-12558521 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 204
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 60, 251

Show alignments to all cow chromosomes.