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Cow genome map

           
Conread name:
           
rnje10c_n3.y1
        

               
Conread position:
               
1-373
               

               
Cow position:
               
chr6:54978826-54979216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
104, 96
               

               
Conread position:
               
2-160
               

               
Cow position:
               
chr6:51393355-51393198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
147, 85
               

               
Conread position:
               
2-263
               

               
Cow position:
               
chr6:28977796-28978075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
35, 97
               

               
Conread position:
               
2-388
               

               
Cow position:
               
chr6:41410303-41409901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
105, 95
               

               
Conread position:
               
2-396
               

               
Cow position:
               
chr6:47383287-47382885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
146, 239
               

               
Conread position:
               
2-404
               

               
Cow position:
               
chr6:2607166-2606747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
73, 102
               

               
Conread position:
               
2-407
               

               
Cow position:
               
chr6:38872826-38873249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 257
               

               
Conread position:
               
2-413
               

               
Cow position:
               
chr6:1887095-1887523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
32, 133
               

               
Conread position:
               
2-418
               

               
Cow position:
               
chr6:57680833-57681262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 97
               

               
Conread position:
               
2-419
               

               
Cow position:
               
chr6:66235041-66234612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
103, 95
               

               
Conread position:
               
2-420
               

               
Cow position:
               
chr6:55170172-55169750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
117, 254
               

               
Conread position:
               
2-422
               

               
Cow position:
               
chr6:17111464-17111901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 95
               

               
Conread position:
               
2-422
               

               
Cow position:
               
chr6:33984497-33984079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
105, 75
               

               
Conread position:
               
2-422
               

               
Cow position:
               
chr6:34075578-34075131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
53, 101
               

               
Conread position:
               
2-422
               

               
Cow position:
               
chr6:39137193-39136768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
153, 225
               

               
Conread position:
               
2-423
               

               
Cow position:
               
chr6:59596957-59596504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
103, 95
               

               
Conread position:
               
2-426
               

               
Cow position:
               
chr6:65910027-65909587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
101, 88
               

               
Conread position:
               
2-427
               

               
Cow position:
               
chr6:17122091-17121649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
103, 95
               

               
Conread position:
               
2-427
               

               
Cow position:
               
chr6:19059975-19059540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
141, 101
               

               
Conread position:
               
2-427
               

               
Cow position:
               
chr6:47381372-47380942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
2-437
               

               
Cow position:
               
chr6:43789666-43790120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 95
               

               
Conread position:
               
2-437
               

               
Cow position:
               
chr6:48872654-48873076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
256, 61
               

               
Conread position:
               
2-442
               

               
Cow position:
               
chr6:29484676-29484225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 95
               

               
Conread position:
               
2-442
               

               
Cow position:
               
chr6:54471947-54472403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 314
               

               
Conread position:
               
2-452
               

               
Cow position:
               
chr6:43797197-43797667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 86
               

               
Conread position:
               
2-456
               

               
Cow position:
               
chr6:16410756-16410285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 95
               

               
Conread position:
               
2-460
               

               
Cow position:
               
chr6:3885805-3886278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 113
               

               
Conread position:
               
2-460
               

               
Cow position:
               
chr6:6119302-6119763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 96
               

               
Conread position:
               
2-460
               

               
Cow position:
               
chr6:42988100-42988577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 87
               

               
Conread position:
               
2-460
               

               
Cow position:
               
chr6:55903791-55903316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 102
               

               
Conread position:
               
2-469
               

               
Cow position:
               
chr6:3484718-3485200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 256
               

               
Conread position:
               
2-469
               

               
Cow position:
               
chr6:5946073-5946556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 257
               

               
Conread position:
               
2-469
               

               
Cow position:
               
chr6:8753756-8754237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 95
               

               
Conread position:
               
2-469
               

               
Cow position:
               
chr6:9737562-9738035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
146, 239
               

               
Conread position:
               
2-469
               

               
Cow position:
               
chr6:15137471-15137954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 257
               

               
Conread position:
               
2-469
               

               
Cow position:
               
chr6:15275539-15276021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 61
               

               
Conread position:
               
2-469
               

               
Cow position:
               
chr6:20451658-20451179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 32
               

               
Conread position:
               
2-469
               

               
Cow position:
               
chr6:24242987-24242506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 32
               

               
Conread position:
               
2-469
               

               
Cow position:
               
chr6:33466657-33466177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 76
               

               
Conread position:
               
2-469
               

               
Cow position:
               
chr6:35873033-35873510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 223
               

               
Conread position:
               
2-469
               

               
Cow position:
               
chr6:40814063-40813584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 95
               

               
Conread position:
               
2-469
               

               
Cow position:
               
chr6:51733783-51733300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 375
               

               
Conread position:
               
2-471
               

               
Cow position:
               
chr6:8205889-8205405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 95
               

               
Conread position:
               
2-482
               

               
Cow position:
               
chr6:47039509-47040005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 257
               

               
Conread position:
               
2-534
               

               
Cow position:
               
chr6:51674467-51673924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 64
               

               
Conread position:
               
2-541
               

               
Cow position:
               
chr6:4468316-4467756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 130
               

               
Conread position:
               
2-660
               

               
Cow position:
               
chr6:181840-182539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
712
               

               
Alignm identity:
               
477
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 268
               

               
Conread position:
               
2-660
               

               
Cow position:
               
chr6:39330830-39331530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
707
               

               
Alignm identity:
               
481
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 258
               

               
Conread position:
               
2-662
               

               
Cow position:
               
chr6:4389414-4388739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
684
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 258
               

               
Conread position:
               
2-663
               

               
Cow position:
               
chr6:52246196-52245507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
702
               

               
Alignm identity:
               
480
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 20
               

               
Conread position:
               
2-671
               

               
Cow position:
               
chr6:6160276-6159646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
681
               

               
Alignm identity:
               
461
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 28
               

               
Conread position:
               
2-671
               

               
Cow position:
               
chr6:47574487-47573792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
705
               

               
Alignm identity:
               
468
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 236
               

               
Conread position:
               
3-213
               

               
Cow position:
               
chr6:37644118-37643895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
3-422
               

               
Cow position:
               
chr6:42897891-42897451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
103, 94
               

               
Conread position:
               
3-459
               

               
Cow position:
               
chr6:34548723-34548262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 62
               

               
Conread position:
               
3-469
               

               
Cow position:
               
chr6:706695-706217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 70
               

               
Conread position:
               
3-469
               

               
Cow position:
               
chr6:12662632-12663096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
141, 60
               

               
Conread position:
               
3-482
               

               
Cow position:
               
chr6:32420641-32420154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 254
               

               
Conread position:
               
3-482
               

               
Cow position:
               
chr6:46633811-46633323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
144, 75
               

               
Conread position:
               
5-427
               

               
Cow position:
               
chr6:65011846-65011422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
109, 29
               

               
Conread position:
               
5-471
               

               
Cow position:
               
chr6:63040636-63041112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
41, 59
               

               
Conread position:
               
5-482
               

               
Cow position:
               
chr6:13307699-13308192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 92
               

               
Conread position:
               
5-671
               

               
Cow position:
               
chr6:39913021-39912315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
713
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 219
               

               
Conread position:
               
11-663
               

               
Cow position:
               
chr6:3928827-3928146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
695
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 16
               

               
Conread position:
               
11-671
               

               
Cow position:
               
chr6:2875343-2876041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
705
               

               
Alignm identity:
               
465
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 48
               

               
Conread position:
               
17-356
               

               
Cow position:
               
chr6:47977618-47977262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
88, 80
               

               
Conread position:
               
17-402
               

               
Cow position:
               
chr6:58914654-58915052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
141, 73
               

               
Conread position:
               
17-469
               

               
Cow position:
               
chr6:46225278-46225743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
90, 80
               

               
Conread position:
               
17-671
               

               
Cow position:
               
chr6:37388253-37387568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
690
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 80
               

               
Conread position:
               
18-328
               

               
Cow position:
               
chr6:24125720-24126045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
130, 236
               

               
Conread position:
               
18-343
               

               
Cow position:
               
chr6:17932612-17932277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
130, 35
               

               
Conread position:
               
18-360
               

               
Cow position:
               
chr6:62788691-62788350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
129, 25
               

               
Conread position:
               
18-373
               

               
Cow position:
               
chr6:28401331-28400958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
88, 79
               

               
Conread position:
               
18-382
               

               
Cow position:
               
chr6:13494407-13494784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
129, 241
               

               
Conread position:
               
18-391
               

               
Cow position:
               
chr6:42481567-42481176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
129, 238
               

               
Conread position:
               
18-393
               

               
Cow position:
               
chr6:10536293-10536686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
88, 79
               

               
Conread position:
               
18-407
               

               
Cow position:
               
chr6:37217325-37216918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
88, 79
               

               
Conread position:
               
18-418
               

               
Cow position:
               
chr6:54900775-54900359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
87, 79
               

               
Conread position:
               
18-419
               

               
Cow position:
               
chr6:126449-126868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
87, 79
               

               
Conread position:
               
18-419
               

               
Cow position:
               
chr6:39080603-39080184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 79
               

               
Conread position:
               
18-422
               

               
Cow position:
               
chr6:889241-888821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
87, 79
               

               
Conread position:
               
18-422
               

               
Cow position:
               
chr6:1245235-1245657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 79
               

               
Conread position:
               
18-422
               

               
Cow position:
               
chr6:6278466-6278046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 242
               

               
Conread position:
               
18-422
               

               
Cow position:
               
chr6:7137656-7138078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 359
               

               
Conread position:
               
18-422
               

               
Cow position:
               
chr6:7449181-7448759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 79
               

               
Conread position:
               
18-422
               

               
Cow position:
               
chr6:11020344-11019922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
88, 79
               

               
Conread position:
               
18-422
               

               
Cow position:
               
chr6:11402006-11401584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 79
               

               
Conread position:
               
18-422
               

               
Cow position:
               
chr6:11453181-11453603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 79
               

               
Conread position:
               
18-422
               

               
Cow position:
               
chr6:12972082-12971660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 79
               

               
Conread position:
               
18-422
               

               
Cow position:
               
chr6:16418005-16418418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 79
               

               
Conread position:
               
18-422
               

               
Cow position:
               
chr6:18912048-18912470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 80
               

               
Conread position:
               
18-422
               

               
Cow position:
               
chr6:20215710-20216132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 79
               

               
Conread position:
               
18-422
               

               
Cow position:
               
chr6:20581093-20581512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 79
               

               
Conread position:
               
18-422
               

               
Cow position:
               
chr6:21163989-21163567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 79
               

               
Conread position:
               
18-422
               

               
Cow position:
               
chr6:22737020-22737442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 79
               

               
Conread position:
               
18-422
               

               
Cow position:
               
chr6:23567922-23568329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 79
               

               
Conread position:
               
18-422
               

               
Cow position:
               
chr6:33808748-33809170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 79
               

               
Conread position:
               
18-422
               

               
Cow position:
               
chr6:39897377-39897799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 79
               

               
Conread position:
               
18-422
               

               
Cow position:
               
chr6:45479402-45479824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 79
               

               
Conread position:
               
18-422
               

               
Cow position:
               
chr6:45976185-45975763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 79
               

               
Conread position:
               
18-422
               

               
Cow position:
               
chr6:46763720-46764142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 41
               

               
Conread position:
               
18-422
               

               
Cow position:
               
chr6:55361109-55361531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 79
               

               
Conread position:
               
18-422
               

               
Cow position:
               
chr6:57329964-57329542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 79
               

               
Conread position:
               
18-422
               

               
Cow position:
               
chr6:62333065-62333485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
131, 17
               

               
Conread position:
               
18-422
               

               
Cow position:
               
chr6:62665461-62665039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 79
               

               
Conread position:
               
18-422
               

               
Cow position:
               
chr6:63177729-63177307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 79
               

               
Conread position:
               
18-422
               

               
Cow position:
               
chr6:63714590-63715012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 79
               

               
Conread position:
               
18-426
               

               
Cow position:
               
chr6:27173527-27173102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
87, 79
               

               
Conread position:
               
18-440
               

               
Cow position:
               
chr6:6459795-6459356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
130, 101
               

               
Conread position:
               
18-459
               

               
Cow position:
               
chr6:18803373-18803831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
129, 241
               

               
Conread position:
               
18-460
               

               
Cow position:
               
chr6:10598668-10598231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
81, 40
               

               
Conread position:
               
18-460
               

               
Cow position:
               
chr6:28065674-28065218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 17
               

               
Conread position:
               
18-460
               

               
Cow position:
               
chr6:53537762-53537303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 79
               

               
Conread position:
               
18-468
               

               
Cow position:
               
chr6:14929130-14928679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
129, 72
               

               
Conread position:
               
18-469
               

               
Cow position:
               
chr6:1834680-1834214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 25
               

               
Conread position:
               
18-469
               

               
Cow position:
               
chr6:3152898-3152437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
88, 79
               

               
Conread position:
               
18-469
               

               
Cow position:
               
chr6:7216471-7216014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 123
               

               
Conread position:
               
18-469
               

               
Cow position:
               
chr6:19103222-19103689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
89, 79
               

               
Conread position:
               
18-469
               

               
Cow position:
               
chr6:21712392-21711925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 359
               

               
Conread position:
               
18-469
               

               
Cow position:
               
chr6:26771436-26771902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
129, 206
               

               
Conread position:
               
18-469
               

               
Cow position:
               
chr6:28000710-28001177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 358
               

               
Conread position:
               
18-476
               

               
Cow position:
               
chr6:11192898-11193375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
87, 45
               

               
Conread position:
               
18-478
               

               
Cow position:
               
chr6:7466965-7467440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 79
               

               
Conread position:
               
18-660
               

               
Cow position:
               
chr6:6568548-6569217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
679
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 278
               

               
Conread position:
               
18-660
               

               
Cow position:
               
chr6:16593634-16592962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
682
               

               
Alignm identity:
               
475
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 241
               

               
Conread position:
               
18-663
               

               
Cow position:
               
chr6:10266446-10267093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
661
               

               
Alignm identity:
               
450
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 219
               

               
Conread position:
               
18-671
               

               
Cow position:
               
chr6:2089944-2089273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
687
               

               
Alignm identity:
               
450
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 45
               

               
Conread position:
               
18-671
               

               
Cow position:
               
chr6:25374422-25375104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
693
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 41
               

               
Conread position:
               
18-671
               

               
Cow position:
               
chr6:26667339-26668033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
701
               

               
Alignm identity:
               
465
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 318
               

               
Conread position:
               
18-671
               

               
Cow position:
               
chr6:28161095-28160399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
700
               

               
Alignm identity:
               
458
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 359
               

               
Conread position:
               
18-671
               

               
Cow position:
               
chr6:40278738-40278049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
702
               

               
Alignm identity:
               
453
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
81, 289
               

               
Conread position:
               
18-671
               

               
Cow position:
               
chr6:45937965-45937288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
689
               

               
Alignm identity:
               
471
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 79
               

               
Conread position:
               
18-671
               

               
Cow position:
               
chr6:55239376-55238686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
696
               

               
Alignm identity:
               
463
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 79
               

               
Conread position:
               
18-671
               

               
Cow position:
               
chr6:60379849-60379153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
701
               

               
Alignm identity:
               
464
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 79
               

               
Conread position:
               
18-671
               

               
Cow position:
               
chr6:67553918-67553223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
702
               

               
Alignm identity:
               
467
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 79
               

               
Conread position:
               
21-331
               

               
Cow position:
               
chr6:6100468-6100795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
84, 76
               

               
Conread position:
               
21-427
               

               
Cow position:
               
chr6:14897864-14897439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 13
               

               
Conread position:
               
21-671
               

               
Cow position:
               
chr6:19712562-19713244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
686
               

               
Alignm identity:
               
473
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 356
               

               
Conread position:
               
21-671
               

               
Cow position:
               
chr6:46948498-46947809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
696
               

               
Alignm identity:
               
458
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 276
               

               
Conread position:
               
22-383
               

               
Cow position:
               
chr6:38917357-38917737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
22-422
               

               
Cow position:
               
chr6:57521857-57521439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
22-469
               

               
Cow position:
               
chr6:479228-478769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 75
               

               
Conread position:
               
22-482
               

               
Cow position:
               
chr6:1797307-1796831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
23-460
               

               
Cow position:
               
chr6:51150623-51150169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 74
               

               
Conread position:
               
23-482
               

               
Cow position:
               
chr6:11388933-11389410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
84, 74
               

               
Conread position:
               
24-345
               

               
Cow position:
               
chr6:48248815-48248482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
120, 217
               

               
Conread position:
               
29-352
               

               
Cow position:
               
chr6:6201004-6200665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
77, 68
               

               
Conread position:
               
35-422
               

               
Cow position:
               
chr6:27093918-27094323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 62
               

               
Conread position:
               
35-469
               

               
Cow position:
               
chr6:50571860-50571410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 62
               

               
Conread position:
               
42-345
               

               
Cow position:
               
chr6:65538998-65538675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
53, 297
               

               
Conread position:
               
60-422
               

               
Cow position:
               
chr6:17387167-17386787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
45, 37
               

               
Conread position:
               
69-659
               

               
Cow position:
               
chr6:5129854-5130451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
611
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 26
               

               
Conread position:
               
103-328
               

               
Cow position:
               
chr6:17415048-17415287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
45, 135
               

               
Conread position:
               
136-671
               

               
Cow position:
               
chr6:28102322-28102875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 10
               

               
Conread position:
               
149-420
               

               
Cow position:
               
chr6:9756079-9756340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
33, 13
               

               
Conread position:
               
149-428
               

               
Cow position:
               
chr6:28518876-28518592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
39, 13
               

               
Conread position:
               
149-429
               

               
Cow position:
               
chr6:42009712-42009977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
273, 10
               

               
Conread position:
               
150-469
               

               
Cow position:
               
chr6:43187648-43187328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
38, 94
               

               
Conread position:
               
150-573
               

               
Cow position:
               
chr6:61055859-61056290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
31, 73
               

               
Conread position:
               
158-352
               

               
Cow position:
               
chr6:39997554-39997751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
30, 86
               

               
Conread position:
               
158-366
               

               
Cow position:
               
chr6:16699665-16699457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
30, 68
               

               
Conread position:
               
158-376
               

               
Cow position:
               
chr6:12629481-12629264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
30, 83
               

               
Conread position:
               
158-385
               

               
Cow position:
               
chr6:32271679-32271904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
29, 82
               

               
Conread position:
               
158-412
               

               
Cow position:
               
chr6:6601379-6601632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
30, 95
               

               
Conread position:
               
158-422
               

               
Cow position:
               
chr6:3987525-3987792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
158-422
               

               
Cow position:
               
chr6:31912644-31912911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
158-422
               

               
Cow position:
               
chr6:31941398-31941131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
158-422
               

               
Cow position:
               
chr6:48882274-48882011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
30, 132
               

               
Conread position:
               
158-422
               

               
Cow position:
               
chr6:65819051-65819318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
30, 204
               

               
Conread position:
               
158-425
               

               
Cow position:
               
chr6:54377081-54376823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
30, 64
               

               
Conread position:
               
158-428
               

               
Cow position:
               
chr6:57967482-57967213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
26, 67
               

               
Conread position:
               
158-445
               

               
Cow position:
               
chr6:3016639-3016351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 25
               

               
Conread position:
               
158-459
               

               
Cow position:
               
chr6:917585-917271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
30, 68
               

               
Conread position:
               
158-460
               

               
Cow position:
               
chr6:25408173-25408463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
23, 64
               

               
Conread position:
               
158-460
               

               
Cow position:
               
chr6:33896120-33896413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
158-460
               

               
Cow position:
               
chr6:43779221-43778926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 85
               

               
Conread position:
               
158-468
               

               
Cow position:
               
chr6:55593601-55593290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 86
               

               
Conread position:
               
158-469
               

               
Cow position:
               
chr6:727112-727407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
128, 65
               

               
Conread position:
               
158-469
               

               
Cow position:
               
chr6:2186251-2186563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
30, 86
               

               
Conread position:
               
158-469
               

               
Cow position:
               
chr6:14950129-14950433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
30, 68
               

               
Conread position:
               
158-469
               

               
Cow position:
               
chr6:56926264-56925952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
26, 51
               

               
Conread position:
               
158-476
               

               
Cow position:
               
chr6:53542952-53543271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
30, 204
               

               
Conread position:
               
158-671
               

               
Cow position:
               
chr6:11638676-11639223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 85
               

               
Conread position:
               
159-442
               

               
Cow position:
               
chr6:32018574-32018872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
26, 85
               

               
Conread position:
               
159-469
               

               
Cow position:
               
chr6:60332875-60332562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 205
               

               
Conread position:
               
159-658
               

               
Cow position:
               
chr6:21856845-21857362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 156
               

               
Conread position:
               
162-595
               

               
Cow position:
               
chr6:28053157-28053586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
54, 44
               

               
Conread position:
               
163-445
               

               
Cow position:
               
chr6:25782888-25783174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 111
               

               
Conread position:
               
166-671
               

               
Cow position:
               
chr6:7920537-7921047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
17, 60
               

               
Conread position:
               
167-405
               

               
Cow position:
               
chr6:27869726-27869487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
86, 74
               

               
Conread position:
               
168-427
               

               
Cow position:
               
chr6:28549517-28549777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
20, 58
               

               
Conread position:
               
169-661
               

               
Cow position:
               
chr6:8633815-8634304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 14
               

               
Conread position:
               
179-671
               

               
Cow position:
               
chr6:2618058-2618573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 110
               

               
Conread position:
               
183-407
               

               
Cow position:
               
chr6:27858960-27858746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
70, 58
               

               
Conread position:
               
183-469
               

               
Cow position:
               
chr6:1498704-1498417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
75, 58
               

               
Conread position:
               
183-469
               

               
Cow position:
               
chr6:1537208-1536924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
70, 58
               

               
Conread position:
               
183-663
               

               
Cow position:
               
chr6:34236588-34237089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
46, 122
               

               
Conread position:
               
183-671
               

               
Cow position:
               
chr6:7105027-7105538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 151
               

               
Conread position:
               
184-422
               

               
Cow position:
               
chr6:508019-508258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
152, 0
               

               
Conread position:
               
186-671
               

               
Cow position:
               
chr6:843327-843838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 173
               

               
Conread position:
               
193-460
               

               
Cow position:
               
chr6:57383909-57383643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
62, 99
               
Show alignments to all cow chromosomes.