Non-Coding RNA Search

Cow genome map


           Conread name:
           rnlu1805b_g12.y1
        

               Conread position:
               1-141
               

               Cow position:
               chr11:65767160-65767297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               111
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               1-145
               

               Cow position:
               chr11:16342268-16342124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               114
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               140, 67
               

               Conread position:
               1-151
               

               Cow position:
               chr11:80923360-80923214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               116
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               1-153
               

               Cow position:
               chr11:18447531-18447384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               113
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               1-153
               

               Cow position:
               chr11:27746884-27747035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               112
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               1-153
               

               Cow position:
               chr11:44036685-44036832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               119
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               140, 41
               

               Conread position:
               1-153
               

               Cow position:
               chr11:83032641-83032794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               113
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               129, 67
               

               Conread position:
               1-155
               

               Cow position:
               chr11:46922925-46922770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               114
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               117, 67
               

               Conread position:
               1-155
               

               Cow position:
               chr11:48496636-48496480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               30, 71
               

               Conread position:
               1-155
               

               Cow position:
               chr11:83043402-83043250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               121
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               1-156
               

               Cow position:
               chr11:35803096-35803250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               90, 62
               

               Conread position:
               1-157
               

               Cow position:
               chr11:18910916-18910767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               116
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               1-157
               

               Cow position:
               chr11:27248454-27248605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               115
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               1-157
               

               Cow position:
               chr11:49872924-49872770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               125
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               132, 67
               

               Conread position:
               1-157
               

               Cow position:
               chr11:62812989-62812835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               115
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               1-159
               

               Cow position:
               chr11:48295994-48296145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               1-164
               

               Cow position:
               chr11:39499317-39499479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               140, 67
               

               Conread position:
               1-167
               

               Cow position:
               chr11:48272161-48272325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               120
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               1-171
               

               Cow position:
               chr11:45435040-45435210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               127
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               42, 68
               

               Conread position:
               1-171
               

               Cow position:
               chr11:64406189-64406352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               156, 63
               

               Conread position:
               1-176
               

               Cow position:
               chr11:2092297-2092461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               1-177
               

               Cow position:
               chr11:62150930-62150757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               127
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               138, 64
               

               Conread position:
               1-177
               

               Cow position:
               chr11:66424918-66424745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               1-183
               

               Cow position:
               chr11:33409301-33409119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               126
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               165, 69
               

               Conread position:
               1-183
               

               Cow position:
               chr11:39060641-39060461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               128
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               165, 63
               

               Conread position:
               1-230
               

               Cow position:
               chr11:47772429-47772212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               1-235
               

               Cow position:
               chr11:59702447-59702690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               88, 67
               

               Conread position:
               1-237
               

               Cow position:
               chr11:61526028-61526256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               161
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               1-238
               

               Cow position:
               chr11:25119970-25119758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               1-239
               

               Cow position:
               chr11:1849210-1848986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               176
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               1-239
               

               Cow position:
               chr11:1932531-1932309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               90, 67
               

               Conread position:
               1-239
               

               Cow position:
               chr11:27932236-27932481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               168
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               1-239
               

               Cow position:
               chr11:34692814-34693056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               130, 69
               

               Conread position:
               1-239
               

               Cow position:
               chr11:63999127-63998911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               1-239
               

               Cow position:
               chr11:65157448-65157226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               51, 66
               

               Conread position:
               1-239
               

               Cow position:
               chr11:69119254-69119499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               180
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               138, 67
               

               Conread position:
               1-240
               

               Cow position:
               chr11:35153863-35153640 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               175
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               1-240
               

               Cow position:
               chr11:50152853-50152633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               170
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               1-248
               

               Cow position:
               chr11:29699739-29699499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               1-248
               

               Cow position:
               chr11:48248255-48248012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               140, 63
               

               Conread position:
               1-248
               

               Cow position:
               chr11:62239706-62239929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               181
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               1-248
               

               Cow position:
               chr11:82796328-82796081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               162
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               117, 66
               

               Conread position:
               1-250
               

               Cow position:
               chr11:4430172-4429935 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               129, 69
               

               Conread position:
               1-262
               

               Cow position:
               chr11:1625263-1625020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               178
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               1-271
               

               Cow position:
               chr11:33341184-33340908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 67
               

               Conread position:
               1-281
               

               Cow position:
               chr11:20761808-20762070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               273, 69
               

               Conread position:
               1-285
               

               Cow position:
               chr11:16934696-16934416 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               42, 121
               

               Conread position:
               1-305
               

               Cow position:
               chr11:261307-261005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               214
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               240, 69
               

               Conread position:
               2-127
               

               Cow position:
               chr11:70620006-70620130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               126
               

               Alignm identity:
               97
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               2-153
               

               Cow position:
               chr11:897635-897785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               117
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               2-238
               

               Cow position:
               chr11:26845632-26845391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               121, 68
               

               Conread position:
               2-240
               

               Cow position:
               chr11:72292514-72292741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               181
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               2-248
               

               Cow position:
               chr11:27405108-27404883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               188
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               2-248
               

               Cow position:
               chr11:47882765-47883011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               163, 66
               

               Conread position:
               2-265
               

               Cow position:
               chr11:17721840-17721595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               197
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               257, 66
               

               Conread position:
               3-125
               

               Cow position:
               chr11:18914988-18915110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               96
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               19, 66
               

               Conread position:
               3-131
               

               Cow position:
               chr11:80820040-80819915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               100
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               3-205
               

               Cow position:
               chr11:63917514-63917316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               142
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               50, 66
               

               Conread position:
               3-239
               

               Cow position:
               chr11:69075874-69076112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               184
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               139, 40
               

               Conread position:
               3-246
               

               Cow position:
               chr11:52297256-52297037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               3-255
               

               Cow position:
               chr11:41293855-41293609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               4-131
               

               Cow position:
               chr11:28168459-28168333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               97
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               4-153
               

               Cow position:
               chr11:42160090-42159945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               114
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               4-159
               

               Cow position:
               chr11:259208-259059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               119
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               48, 42
               

               Conread position:
               4-237
               

               Cow position:
               chr11:44234319-44234552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               48, 34
               

               Conread position:
               4-238
               

               Cow position:
               chr11:40608630-40608415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               4-239
               

               Cow position:
               chr11:62620340-62620555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               171
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               4-250
               

               Cow position:
               chr11:34646553-34646785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               184
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               4-277
               

               Cow position:
               chr11:73924599-73924317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               211
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               66, 73
               

               Conread position:
               4-290
               

               Cow position:
               chr11:8437729-8437462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               210
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               5-149
               

               Cow position:
               chr11:29960263-29960402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               112
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               6-231
               

               Cow position:
               chr11:19606544-19606765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               174
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               6-255
               

               Cow position:
               chr11:10363420-10363153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               199
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               103, 62
               

               Conread position:
               8-159
               

               Cow position:
               chr11:62789098-62789244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               115
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               8-225
               

               Cow position:
               chr11:65803903-65803681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               168
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               66, 60
               

               Conread position:
               8-232
               

               Cow position:
               chr11:58173593-58173807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               152
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               8-238
               

               Cow position:
               chr11:83323531-83323755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               111, 60
               

               Conread position:
               8-239
               

               Cow position:
               chr11:2639689-2639465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               159
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               8-239
               

               Cow position:
               chr11:15382535-15382316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               176
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               8-257
               

               Cow position:
               chr11:53717839-53717592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               173
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               142, 62
               

               Conread position:
               8-277
               

               Cow position:
               chr11:6267159-6267426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               183
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               26, 67
               

               Conread position:
               10-229
               

               Cow position:
               chr11:35363451-35363666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               194, 58
               

               Conread position:
               10-240
               

               Cow position:
               chr11:61454544-61454323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               166
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               176, 37
               

               Conread position:
               10-246
               

               Cow position:
               chr11:377672-377434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               166
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               130, 62
               

               Conread position:
               10-246
               

               Cow position:
               chr11:79019089-79018824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               190
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               118, 58
               

               Conread position:
               11-130
               

               Cow position:
               chr11:44636783-44636665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               120
               

               Alignm identity:
               97
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               11-132
               

               Cow position:
               chr11:32691000-32690880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               123
               

               Alignm identity:
               97
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               36, 44
               

               Conread position:
               11-169
               

               Cow position:
               chr11:30954971-30955125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               120
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               11-177
               

               Cow position:
               chr11:56290482-56290644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               11-225
               

               Cow position:
               chr11:43430483-43430271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               114, 59
               

               Conread position:
               11-232
               

               Cow position:
               chr11:48474674-48474881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               11-237
               

               Cow position:
               chr11:29786528-29786316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               11-239
               

               Cow position:
               chr11:952240-952465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               36, 44
               

               Conread position:
               11-239
               

               Cow position:
               chr11:4653002-4652768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               132, 55
               

               Conread position:
               11-239
               

               Cow position:
               chr11:17638564-17638339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               169
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               182, 60
               

               Conread position:
               11-239
               

               Cow position:
               chr11:58938774-58938537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               120, 57
               

               Conread position:
               11-239
               

               Cow position:
               chr11:82731027-82730805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               11-240
               

               Cow position:
               chr11:16907078-16906851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               42, 60
               

               Conread position:
               11-248
               

               Cow position:
               chr11:50072908-50073143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               126, 59
               

               Conread position:
               11-250
               

               Cow position:
               chr11:17321618-17321857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               85, 57
               

               Conread position:
               11-250
               

               Cow position:
               chr11:62225945-62226199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               196
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               31, 69
               

               Conread position:
               11-252
               

               Cow position:
               chr11:22747357-22747118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               185
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               25, 40
               

               Conread position:
               11-254
               

               Cow position:
               chr11:6633681-6633919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               11-255
               

               Cow position:
               chr11:17831250-17831012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               11-266
               

               Cow position:
               chr11:58990473-58990718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               229, 39
               

               Conread position:
               11-272
               

               Cow position:
               chr11:3283000-3283251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               189
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               11-280
               

               Cow position:
               chr11:49255375-49255629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               190
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               12-237
               

               Cow position:
               chr11:5201680-5201469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               12-252
               

               Cow position:
               chr11:67312752-67312977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               174
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               12-266
               

               Cow position:
               chr11:2900749-2900506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               229, 56
               

               Conread position:
               13-160
               

               Cow position:
               chr11:71021973-71022118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               112
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               13-251
               

               Cow position:
               chr11:33310946-33311200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               68, 55
               

               Conread position:
               15-156
               

               Cow position:
               chr11:20205877-20205738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               106
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               15-177
               

               Cow position:
               chr11:28644062-28644222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               15-205
               

               Cow position:
               chr11:63909690-63909510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               141
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               7, 56
               

               Conread position:
               15-229
               

               Cow position:
               chr11:5249552-5249347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               174, 37
               

               Conread position:
               15-240
               

               Cow position:
               chr11:48649947-48650166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               158
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               15-250
               

               Cow position:
               chr11:73984029-73983800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               15-303
               

               Cow position:
               chr11:32782909-32782631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               196
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               238, 53
               

               Conread position:
               16-247
               

               Cow position:
               chr11:79466187-79466409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               170
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               17-157
               

               Cow position:
               chr11:63165670-63165532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               105
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               18-266
               

               Cow position:
               chr11:72375705-72375461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               73, 52
               

               Conread position:
               20-165
               

               Cow position:
               chr11:8107424-8107563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               112
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               25-316
               

               Cow position:
               chr11:81605843-81606136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               197
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               129, 30
               

               Conread position:
               27-229
               

               Cow position:
               chr11:70741129-70741325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               148
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               172, 41
               

               Conread position:
               28-238
               

               Cow position:
               chr11:52415423-52415627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               28-246
               

               Cow position:
               chr11:74378862-74379079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               115, 126
               

               Conread position:
               28-248
               

               Cow position:
               chr11:60296718-60296926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               32-248
               

               Cow position:
               chr11:17195839-17195628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               140, 36
               

               Conread position:
               32-257
               

               Cow position:
               chr11:62749477-62749253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               171
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               140, 34
               

               Conread position:
               35-237
               

               Cow position:
               chr11:11523463-11523264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               59, 31
               

               Conread position:
               39-252
               

               Cow position:
               chr11:37982579-37982357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               167
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               100, 29
               

               Conread position:
               47-231
               

               Cow position:
               chr11:31326013-31326191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               140
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               51-239
               

               Cow position:
               chr11:80008057-80007883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               51-252
               

               Cow position:
               chr11:30485662-30485849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               149
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               52-231
               

               Cow position:
               chr11:6092394-6092572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               102, 16
               

               Conread position:
               52-239
               

               Cow position:
               chr11:434862-434681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               52-239
               

               Cow position:
               chr11:77208086-77208266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               52-247
               

               Cow position:
               chr11:4436759-4436948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               52-248
               

               Cow position:
               chr11:70513599-70513803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               146
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               79, 16
               

               Conread position:
               52-291
               

               Cow position:
               chr11:71443228-71443000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               76, 16
               

               Conread position:
               64-211
               

               Cow position:
               chr11:14094110-14093959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               112
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               6, 0
               

               Conread position:
               67-231
               

               Cow position:
               chr11:10695424-10695579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               124
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               67-235
               

               Cow position:
               chr11:49210796-49210642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               127
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               67-274
               

               Cow position:
               chr11:11483337-11483531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               161
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               67-299
               

               Cow position:
               chr11:42183057-42183276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               68-217
               

               Cow position:
               chr11:42067080-42067228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               108
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               68-217
               

               Cow position:
               chr11:82289605-82289745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               116
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               68-232
               

               Cow position:
               chr11:43008293-43008134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               121
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               68-237
               

               Cow position:
               chr11:70517568-70517401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               121
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               68-238
               

               Cow position:
               chr11:49486805-49486967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               123
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               68-239
               

               Cow position:
               chr11:17966238-17966075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               125
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               68-239
               

               Cow position:
               chr11:25614787-25614624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               127
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               68-239
               

               Cow position:
               chr11:35073567-35073389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               134
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               78, 18
               

               Conread position:
               68-239
               

               Cow position:
               chr11:47110275-47110435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               68-239
               

               Cow position:
               chr11:69307540-69307709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               128
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               111, 58
               

               Conread position:
               68-240
               

               Cow position:
               chr11:80576264-80576438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               73, 154
               

               Conread position:
               68-240
               

               Cow position:
               chr11:80596364-80596535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               127
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               68-248
               

               Cow position:
               chr11:69421686-69421517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               132
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               68-250
               

               Cow position:
               chr11:47784801-47784970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               139
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               68-252
               

               Cow position:
               chr11:75246375-75246563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               74, 6
               

               Conread position:
               68-255
               

               Cow position:
               chr11:6202469-6202651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               139
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               39, 59
               

               Conread position:
               68-267
               

               Cow position:
               chr11:59916173-59916374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               104, 176
               

               Conread position:
               68-271
               

               Cow position:
               chr11:18777573-18777385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               69-245
               

               Cow position:
               chr11:30597055-30597220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               69-262
               

               Cow position:
               chr11:6024557-6024360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               74-239
               

               Cow position:
               chr11:74152722-74152570 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               74-255
               

               Cow position:
               chr11:63640840-63640660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               149
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               167, 61
               

               Conread position:
               74-276
               

               Cow position:
               chr11:62487189-62487391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               145
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               9, 31
               

               Conread position:
               75-229
               

               Cow position:
               chr11:34144891-34144750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               123
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               75-243
               

               Cow position:
               chr11:2864037-2864206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               122
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               75-250
               

               Cow position:
               chr11:21894128-21893960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               129
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               75-275
               

               Cow position:
               chr11:82999703-82999510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               76-248
               

               Cow position:
               chr11:62754283-62754109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               59, 84
               

               Conread position:
               77-249
               

               Cow position:
               chr11:62799247-62799421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               78-240
               

               Cow position:
               chr11:39271349-39271192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               155, 39
               

               Conread position:
               78-249
               

               Cow position:
               chr11:17466053-17465890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               132
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               80-281
               

               Cow position:
               chr11:17563257-17563447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               83-248
               

               Cow position:
               chr11:63549868-63550043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               142
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               45, 144
               

               Conread position:
               88-239
               

               Cow position:
               chr11:81173261-81173107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               97, 54
               

               Conread position:
               90-209
               

               Cow position:
               chr11:82944928-82945050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               123
               

               Alignm identity:
               99
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               99-248
               

               Cow position:
               chr11:76995261-76995106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               121
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               105-239
               

               Cow position:
               chr11:54219052-54219186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               105
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               32, 11
               

               Conread position:
               107-239
               

               Cow position:
               chr11:48932544-48932410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               111
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               34, 12
               

               Conread position:
               128-248
               

               Cow position:
               chr11:53130830-53130949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               122
               

               Alignm identity:
               97
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               16, 28
               

               Conread position:
               128-270
               

               Cow position:
               chr11:16796575-16796714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               107
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               129-246
               

               Cow position:
               chr11:27462041-27461925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               92
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               136-251
               

               Cow position:
               chr11:65842755-65842640 (view UCSC Genome Browser custom track)
               

               Alignm length:
               116
               

               Alignm identity:
               91
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               137-240
               

               Cow position:
               chr11:8419853-8419750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               104
               

               Alignm identity:
               86
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               137-250
               

               Cow position:
               chr11:77468340-77468227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               114
               

               Alignm identity:
               101
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               144-248
               

               Cow position:
               chr11:3234225-3234328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               105
               

               Alignm identity:
               89
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               144-256
               

               Cow position:
               chr11:44036982-44037090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               113
               

               Alignm identity:
               94
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               144-259
               

               Cow position:
               chr11:34623298-34623416 (view UCSC Genome Browser custom track)
               

               Alignm length:
               119
               

               Alignm identity:
               96
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               103, 0
               

               Conread position:
               144-275
               

               Cow position:
               chr11:17991309-17991447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               112
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               25, 119
               

               Conread position:
               144-277
               

               Cow position:
               chr11:480558-480691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               107
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               84, 99
               

               Conread position:
               149-285
               

               Cow position:
               chr11:5449121-5448986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               103
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               113, 0
               

               Conread position:
               151-248
               

               Cow position:
               chr11:15591388-15591292 (view UCSC Genome Browser custom track)
               

               Alignm length:
               98
               

               Alignm identity:
               82
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               151-248
               

               Cow position:
               chr11:40818540-40818445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               98
               

               Alignm identity:
               85
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               151-256
               

               Cow position:
               chr11:47904327-47904432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               106
               

               Alignm identity:
               85
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               154-239
               

               Cow position:
               chr11:67600872-67600957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               86
               

               Alignm identity:
               76
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               157-262
               

               Cow position:
               chr11:58185969-58186075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               107
               

               Alignm identity:
               87
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               157-265
               

               Cow position:
               chr11:70821141-70821249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               109
               

               Alignm identity:
               89
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               0, 0
               
Show alignments to all cow chromosomes.
Conread position:	1-141
Cow position:	chr11:65767160-65767297 (view UCSC Genome Browser custom track)
Alignm length:	141
Alignm identity:	111
Alignm E-value:	2e-26
Alignm gaps (pig, cow):	67, 0
Conread position:	1-145
Cow position:	chr11:16342268-16342124 (view UCSC Genome Browser custom track)
Alignm length:	146
Alignm identity:	114
Alignm E-value:	8e-28
Alignm gaps (pig, cow):	140, 67
Conread position:	1-151
Cow position:	chr11:80923360-80923214 (view UCSC Genome Browser custom track)
Alignm length:	151
Alignm identity:	116
Alignm E-value:	7e-27
Alignm gaps (pig, cow):	67, 0
Conread position:	1-153
Cow position:	chr11:18447531-18447384 (view UCSC Genome Browser custom track)
Alignm length:	153
Alignm identity:	113
Alignm E-value:	4e-22
Alignm gaps (pig, cow):	67, 0
Conread position:	1-155
Cow position:	chr11:46922925-46922770 (view UCSC Genome Browser custom track)
Alignm length:	157
Alignm identity:	114
Alignm E-value:	1e-21
Alignm gaps (pig, cow):	117, 67
Conread position:	1-156
Cow position:	chr11:35803096-35803250 (view UCSC Genome Browser custom track)
Alignm length:	160
Alignm identity:	124
Alignm E-value:	2e-26
Alignm gaps (pig, cow):	90, 62
Conread position:	1-157
Cow position:	chr11:18910916-18910767 (view UCSC Genome Browser custom track)
Alignm length:	157
Alignm identity:	116
Alignm E-value:	1e-21
Alignm gaps (pig, cow):	46, 0
Conread position:	1-159
Cow position:	chr11:48295994-48296145 (view UCSC Genome Browser custom track)
Alignm length:	159
Alignm identity:	117
Alignm E-value:	1e-21
Alignm gaps (pig, cow):	63, 0
Conread position:	1-164
Cow position:	chr11:39499317-39499479 (view UCSC Genome Browser custom track)
Alignm length:	165
Alignm identity:	121
Alignm E-value:	2e-24
Alignm gaps (pig, cow):	140, 67
Conread position:	1-167
Cow position:	chr11:48272161-48272325 (view UCSC Genome Browser custom track)
Alignm length:	167
Alignm identity:	120
Alignm E-value:	2e-23
Alignm gaps (pig, cow):	67, 0
Conread position:	1-171
Cow position:	chr11:45435040-45435210 (view UCSC Genome Browser custom track)
Alignm length:	172
Alignm identity:	127
Alignm E-value:	8e-28
Alignm gaps (pig, cow):	42, 68
Conread position:	1-176
Cow position:	chr11:2092297-2092461 (view UCSC Genome Browser custom track)
Alignm length:	176
Alignm identity:	129
Alignm E-value:	1e-22
Alignm gaps (pig, cow):	37, 0
Conread position:	1-177
Cow position:	chr11:62150930-62150757 (view UCSC Genome Browser custom track)
Alignm length:	178
Alignm identity:	127
Alignm E-value:	5e-23
Alignm gaps (pig, cow):	138, 64
Conread position:	1-183
Cow position:	chr11:33409301-33409119 (view UCSC Genome Browser custom track)
Alignm length:	184
Alignm identity:	126
Alignm E-value:	4e-21
Alignm gaps (pig, cow):	165, 69
Conread position:	1-230
Cow position:	chr11:47772429-47772212 (view UCSC Genome Browser custom track)
Alignm length:	230
Alignm identity:	167
Alignm E-value:	1e-32
Alignm gaps (pig, cow):	67, 0
Conread position:	1-235
Cow position:	chr11:59702447-59702690 (view UCSC Genome Browser custom track)
Alignm length:	245
Alignm identity:	176
Alignm E-value:	1e-33
Alignm gaps (pig, cow):	88, 67
Conread position:	1-237
Cow position:	chr11:61526028-61526256 (view UCSC Genome Browser custom track)
Alignm length:	237
Alignm identity:	161
Alignm E-value:	5e-24
Alignm gaps (pig, cow):	57, 0
Conread position:	1-238
Cow position:	chr11:25119970-25119758 (view UCSC Genome Browser custom track)
Alignm length:	238
Alignm identity:	173
Alignm E-value:	2e-26
Alignm gaps (pig, cow):	34, 0
Conread position:	1-239
Cow position:	chr11:1849210-1848986 (view UCSC Genome Browser custom track)
Alignm length:	239
Alignm identity:	176
Alignm E-value:	4e-33
Alignm gaps (pig, cow):	69, 0
Conread position:	1-240
Cow position:	chr11:35153863-35153640 (view UCSC Genome Browser custom track)
Alignm length:	240
Alignm identity:	175
Alignm E-value:	4e-31
Alignm gaps (pig, cow):	67, 0