Cow genome map

Conread name: rnlu1805b_g12.y1

Conread position: 1-124
Cow position: chr20:33363539-33363661 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 58, 0

Conread position: 1-126
Cow position: chr20:8817470-8817346 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 96
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 67, 0

Conread position: 1-129
Cow position: chr20:26077647-26077520 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 98
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 67, 0

Conread position: 1-131
Cow position: chr20:19459644-19459515 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 98
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 67, 0

Conread position: 1-132
Cow position: chr20:14806908-14807038 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 100
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 67, 0

Conread position: 1-134
Cow position: chr20:6358641-6358773 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 67, 0

Conread position: 1-153
Cow position: chr20:5702745-5702897 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 138, 67

Conread position: 1-153
Cow position: chr20:20203239-20203388 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 63, 0

Conread position: 1-155
Cow position: chr20:7756601-7756453 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 65, 0

Conread position: 1-155
Cow position: chr20:12239660-12239510 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 21, 64

Conread position: 1-157
Cow position: chr20:3148705-3148859 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 113
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 67, 0

Conread position: 1-157
Cow position: chr20:24069827-24069981 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 121
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 67, 0

Conread position: 1-160
Cow position: chr20:7426176-7426019 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 65, 0

Conread position: 1-163
Cow position: chr20:21815582-21815742 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 124
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 67, 0

Conread position: 1-177
Cow position: chr20:35445082-35444908 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 126
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 174, 65

Conread position: 1-238
Cow position: chr20:24902272-24902037 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 167
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 65, 0

Conread position: 1-239
Cow position: chr20:20242101-20242347 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 175
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 24, 66

Conread position: 1-239
Cow position: chr20:38514800-38515027 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 174
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 67, 0

Conread position: 1-244
Cow position: chr20:39266935-39266693 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 173
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 130, 12

Conread position: 1-250
Cow position: chr20:16935289-16935057 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 176
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 195, 44

Conread position: 1-250
Cow position: chr20:26996552-26996782 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 180
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 7, 0

Conread position: 1-261
Cow position: chr20:38089934-38090176 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 181
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 70, 0

Conread position: 1-264
Cow position: chr20:11751675-11751919 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 189
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 240, 65

Conread position: 1-266
Cow position: chr20:36779708-36779455 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 178
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 69, 0

Conread position: 1-267
Cow position: chr20:17100384-17100641 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 178
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 204, 65

Conread position: 2-155
Cow position: chr20:25009609-25009459 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 113
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 2-157
Cow position: chr20:19060815-19060664 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 115
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 31, 67

Conread position: 2-239
Cow position: chr20:15529883-15530098 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 170
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 66, 0

Conread position: 2-254
Cow position: chr20:40157922-40158174 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 173
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 180, 66

Conread position: 3-155
Cow position: chr20:3255060-3255210 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 113
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 107, 32

Conread position: 3-157
Cow position: chr20:24097024-24097175 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 65, 0

Conread position: 3-239
Cow position: chr20:15548873-15548654 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 163
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 61, 0

Conread position: 4-211
Cow position: chr20:26723654-26723459 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 149
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 186, 60

Conread position: 5-153
Cow position: chr20:25162101-25161954 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 28, 64

Conread position: 5-155
Cow position: chr20:3564185-3564329 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 59, 0

Conread position: 5-238
Cow position: chr20:8578274-8578492 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 175
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 213, 63

Conread position: 6-157
Cow position: chr20:630551-630700 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 39, 0

Conread position: 6-271
Cow position: chr20:23870793-23870529 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 182
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 16, 30

Conread position: 8-141
Cow position: chr20:18320763-18320636 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 108
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 61, 0

Conread position: 8-227
Cow position: chr20:38670778-38670992 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 159
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 129, 60

Conread position: 11-196
Cow position: chr20:38578729-38578552 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 133
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 122, 37

Conread position: 11-232
Cow position: chr20:10772237-10772462 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 163
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 130, 57

Conread position: 11-239
Cow position: chr20:21714787-21715027 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 164
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 53, 0

Conread position: 11-243
Cow position: chr20:5998640-5998419 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 171
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 84, 59

Conread position: 11-248
Cow position: chr20:12995974-12995745 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 171
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 131, 57

Conread position: 11-249
Cow position: chr20:6240489-6240272 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 171
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 59, 0

Conread position: 11-249
Cow position: chr20:12581923-12581708 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 175
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 57, 0

Conread position: 11-250
Cow position: chr20:37090653-37090887 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 174
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 34, 58

Conread position: 11-256
Cow position: chr20:580889-580643 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 172
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 130, 57

Conread position: 11-275
Cow position: chr20:36633848-36634107 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 191
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 146, 47

Conread position: 12-239
Cow position: chr20:7709749-7709513 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 165
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 122, 56

Conread position: 12-249
Cow position: chr20:20056455-20056207 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 179
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 19, 58

Conread position: 12-285
Cow position: chr20:33438948-33438667 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 201
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 122, 56

Conread position: 13-214
Cow position: chr20:23064797-23064601 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 147
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 124, 46

Conread position: 14-216
Cow position: chr20:2169688-2169476 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 154
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 119, 16

Conread position: 15-167
Cow position: chr20:20099567-20099418 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 7, 55

Conread position: 15-168
Cow position: chr20:17845996-17846147 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 118, 32

Conread position: 15-227
Cow position: chr20:12085398-12085204 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 154
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 69, 32

Conread position: 15-230
Cow position: chr20:15589076-15589294 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 151
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 27, 58

Conread position: 15-252
Cow position: chr20:11043437-11043209 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 170
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 47, 0

Conread position: 15-265
Cow position: chr20:5078662-5078899 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 180
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 53, 0

Conread position: 15-267
Cow position: chr20:19328423-19328666 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 172
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 231, 53

Conread position: 18-251
Cow position: chr20:21721248-21721470 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 171
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 50, 0

Conread position: 21-283
Cow position: chr20:26041057-26040818 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 187
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 47, 0

Conread position: 22-169
Cow position: chr20:19834788-19834646 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 46, 0

Conread position: 27-243
Cow position: chr20:3781158-3780935 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 162
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 101, 44

Conread position: 29-249
Cow position: chr20:3588684-3588908 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 177
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 11, 41

Conread position: 33-252
Cow position: chr20:5826993-5827215 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 166
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 109, 35

Conread position: 35-240
Cow position: chr20:15846810-15847021 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 148
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 108, 31

Conread position: 37-231
Cow position: chr20:34835657-34835457 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 141
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 97, 31

Conread position: 52-235
Cow position: chr20:15547262-15547451 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 134
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 91, 16

Conread position: 52-240
Cow position: chr20:37229012-37228828 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 142
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 16, 0

Conread position: 52-250
Cow position: chr20:5978774-5978594 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 146
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 16, 0

Conread position: 68-239
Cow position: chr20:9923654-9923829 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 95, 69

Conread position: 68-239
Cow position: chr20:30027435-30027612 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 134
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 71, 0

Conread position: 68-243
Cow position: chr20:4621267-4621099 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 125
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 103, 0

Conread position: 68-246
Cow position: chr20:26790524-26790355 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 140
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 66, 0

Conread position: 68-263
Cow position: chr20:20739200-20739010 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 151
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 173, 67

Conread position: 70-250
Cow position: chr20:36842665-36842836 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 135
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 13, 0

Conread position: 74-266
Cow position: chr20:8021219-8021402 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 140
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 61, 0

Conread position: 77-237
Cow position: chr20:36880931-36880768 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 128
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 65, 134

Conread position: 92-250
Cow position: chr20:15199077-15199228 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 42, 0

Conread position: 93-263
Cow position: chr20:8652789-8652947 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 130
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 37, 0

Conread position: 97-230
Cow position: chr20:17925661-17925783 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 106
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 70, 0

Conread position: 104-238
Cow position: chr20:19090712-19090575 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 117-261
Cow position: chr20:23591367-23591221 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 24, 9

Conread position: 128-235
Cow position: chr20:36023231-36023123 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 93
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 9, 0

Conread position: 128-238
Cow position: chr20:10788785-10788676 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 93
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 16, 0

Conread position: 138-261
Cow position: chr20:15760429-15760310 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 17, 0

Conread position: 139-240
Cow position: chr20:1009292-1009192 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 86
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 80, 0

Conread position: 141-238
Cow position: chr20:38618038-38618134 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 84
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 52, 0

Conread position: 144-274
Cow position: chr20:5061299-5061428 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 99
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 101, 0

Conread position: 144-276
Cow position: chr20:35700206-35700337 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 99
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 94, 0

Conread position: 145-286
Cow position: chr20:23506082-23506221 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 96, 14

Conread position: 148-248
Cow position: chr20:21325472-21325572 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 82
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 149-247
Cow position: chr20:1999532-1999630 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 81
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 151-272
Cow position: chr20:32550371-32550253 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 95
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 89, 0

Conread position: 157-253
Cow position: chr20:6048408-6048312 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 80
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 161-265
Cow position: chr20:14807043-14807147 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 84
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.