Cow genome map

Conread name: rnlu1805b_g12.y1

Conread position: 1-129
Cow position: chr24:30897582-30897457 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 63, 0

Conread position: 1-139
Cow position: chr24:32095267-32095398 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 57, 0

Conread position: 1-141
Cow position: chr24:23186965-23186826 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 105
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 67, 0

Conread position: 1-156
Cow position: chr24:230232-230392 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 125
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 42, 72

Conread position: 1-157
Cow position: chr24:5754790-5754943 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 115
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 67, 0

Conread position: 1-157
Cow position: chr24:28496628-28496475 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 67, 0

Conread position: 1-158
Cow position: chr24:33221986-33221823 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 126
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 90, 63

Conread position: 1-161
Cow position: chr24:28233999-28234151 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 66, 0

Conread position: 1-162
Cow position: chr24:17375592-17375752 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 114
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 70, 0

Conread position: 1-170
Cow position: chr24:201683-201517 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 41, 72

Conread position: 1-177
Cow position: chr24:42981805-42981637 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 66, 0

Conread position: 1-183
Cow position: chr24:27844574-27844397 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 132
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 165, 67

Conread position: 1-184
Cow position: chr24:20364456-20364274 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 128
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 171, 67

Conread position: 1-189
Cow position: chr24:31359275-31359462 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 135
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 184, 67

Conread position: 1-223
Cow position: chr24:6912410-6912203 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 155
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 70, 0

Conread position: 1-226
Cow position: chr24:33465664-33465437 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 158
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 125, 67

Conread position: 1-229
Cow position: chr24:12077544-12077758 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 167
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 61, 139

Conread position: 1-235
Cow position: chr24:15373359-15373595 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 172
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 127, 67

Conread position: 1-235
Cow position: chr24:28042929-28043160 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 178
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 157, 67

Conread position: 1-235
Cow position: chr24:39791495-39791730 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 175
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 176, 67

Conread position: 1-238
Cow position: chr24:33153731-33153972 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 183
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 139, 44

Conread position: 1-239
Cow position: chr24:13948077-13948293 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 176
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 67, 0

Conread position: 1-239
Cow position: chr24:18474775-18474558 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 170
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 63, 0

Conread position: 1-239
Cow position: chr24:30235827-30236043 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 178
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 69, 0

Conread position: 1-239
Cow position: chr24:40983085-40983329 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 180
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 127, 52

Conread position: 1-246
Cow position: chr24:30308599-30308348 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 196
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 141, 67

Conread position: 1-248
Cow position: chr24:3165772-3165999 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 177
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 69, 0

Conread position: 1-248
Cow position: chr24:27284775-27285004 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 190
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 45, 0

Conread position: 1-253
Cow position: chr24:29595855-29595614 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 175
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 250, 67

Conread position: 2-158
Cow position: chr24:29063702-29063549 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 115
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 154, 25

Conread position: 2-159
Cow position: chr24:21835004-21834854 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 66, 0

Conread position: 2-239
Cow position: chr24:37058983-37058747 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 162
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 23, 13

Conread position: 3-129
Cow position: chr24:37823483-37823608 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 96
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 65, 0

Conread position: 3-131
Cow position: chr24:29561617-29561490 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 97
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 65, 0

Conread position: 3-163
Cow position: chr24:27349218-27349063 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 65, 0

Conread position: 3-242
Cow position: chr24:37650630-37650849 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 178
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 65, 0

Conread position: 4-157
Cow position: chr24:22133128-22133277 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 62, 0

Conread position: 5-169
Cow position: chr24:28319251-28319090 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 63, 0

Conread position: 5-201
Cow position: chr24:5141901-5142096 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 141
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 178, 16

Conread position: 5-239
Cow position: chr24:25885201-25884977 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 172
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 5, 62

Conread position: 5-239
Cow position: chr24:28689624-28689866 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 179
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 47, 65

Conread position: 10-164
Cow position: chr24:29539966-29539814 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 56, 0

Conread position: 11-225
Cow position: chr24:34465542-34465336 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 149
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 57, 0

Conread position: 11-231
Cow position: chr24:18741608-18741402 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 152
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 59, 0

Conread position: 11-246
Cow position: chr24:24457286-24457064 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 174
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 57, 0

Conread position: 11-247
Cow position: chr24:15347553-15347779 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 162
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 94, 57

Conread position: 11-248
Cow position: chr24:43536917-43537139 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 165
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 65, 0

Conread position: 11-260
Cow position: chr24:31159583-31159824 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 175
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 236, 40

Conread position: 11-272
Cow position: chr24:18614965-18615219 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 179
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 57, 0

Conread position: 12-238
Cow position: chr24:28289288-28289062 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 162
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 131, 59

Conread position: 15-183
Cow position: chr24:31816545-31816713 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 122
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 7, 54

Conread position: 15-238
Cow position: chr24:28470712-28470497 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 157
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 53, 0

Conread position: 15-240
Cow position: chr24:41405858-41406066 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 167
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 25, 57

Conread position: 15-246
Cow position: chr24:11119245-11119472 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 170
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 192, 55

Conread position: 21-239
Cow position: chr24:2675289-2675507 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 162
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 116, 49

Conread position: 21-251
Cow position: chr24:40404834-40404604 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 171
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 191, 49

Conread position: 25-252
Cow position: chr24:36775799-36775590 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 163
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 41, 0

Conread position: 25-268
Cow position: chr24:39345395-39345145 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 184
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 23, 44

Conread position: 36-248
Cow position: chr24:18313945-18313737 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 159
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 99, 0

Conread position: 52-261
Cow position: chr24:34772308-34772112 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 155
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 18, 0

Conread position: 53-261
Cow position: chr24:28186508-28186292 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 158
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 75, 10

Conread position: 56-238
Cow position: chr24:21656415-21656580 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 137
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 12, 0

Conread position: 66-240
Cow position: chr24:6450512-6450681 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 130
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 85, 30

Conread position: 67-239
Cow position: chr24:21887440-21887280 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 70, 0

Conread position: 67-239
Cow position: chr24:31822595-31822761 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 138
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 66, 0

Conread position: 67-239
Cow position: chr24:42792357-42792523 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 48, 0

Conread position: 68-235
Cow position: chr24:19889946-19889790 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 129
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 22, 0

Conread position: 68-239
Cow position: chr24:39304901-39304740 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 124
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 63, 0

Conread position: 68-245
Cow position: chr24:43200254-43200079 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 126
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 175, 59

Conread position: 68-246
Cow position: chr24:10840900-10840727 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 138
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 67, 0

Conread position: 68-248
Cow position: chr24:18328455-18328278 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 129
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 75, 59

Conread position: 68-248
Cow position: chr24:32818283-32818098 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 136
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 115, 62

Conread position: 68-252
Cow position: chr24:43024280-43024463 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 138
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 75, 173

Conread position: 69-248
Cow position: chr24:19779331-19779160 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 137
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 14, 0

Conread position: 71-240
Cow position: chr24:18390282-18390106 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 130
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 49, 0

Conread position: 75-239
Cow position: chr24:24013786-24013936 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 53, 0

Conread position: 75-248
Cow position: chr24:21918170-21918001 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 69, 0

Conread position: 75-251
Cow position: chr24:27168335-27168517 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 132
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 40, 0

Conread position: 78-248
Cow position: chr24:30176476-30176630 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 132
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 64, 0

Conread position: 81-238
Cow position: chr24:37073831-37073674 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 114
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 37, 62

Conread position: 83-239
Cow position: chr24:34533156-34533308 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 115
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 92-247
Cow position: chr24:43011328-43011186 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 129
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 36, 0

Conread position: 97-248
Cow position: chr24:39259759-39259915 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 15, 0

Conread position: 105-239
Cow position: chr24:28318911-28318779 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 102
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 42, 0

Conread position: 106-289
Cow position: chr24:39841497-39841312 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 144
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 34, 135

Conread position: 108-248
Cow position: chr24:35466956-35466821 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 27, 0

Conread position: 128-246
Cow position: chr24:16517790-16517672 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 93
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 128-247
Cow position: chr24:216813-216933 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 103
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 9, 0

Conread position: 141-256
Cow position: chr24:12828266-12828382 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 91
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 107, 0

Conread position: 144-239
Cow position: chr24:13344914-13344818 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 82
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 74, 0

Conread position: 144-262
Cow position: chr24:40256701-40256819 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 91
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 145-248
Cow position: chr24:2448532-2448637 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 86
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 147-266
Cow position: chr24:18302793-18302912 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 98
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 50, 110

Conread position: 149-237
Cow position: chr24:10219305-10219217 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 76
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 155-239
Cow position: chr24:28303275-28303191 (view UCSC Genome Browser custom track)
Alignm length: 85
Alignm identity: 75
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.