Cow genome map

Conread name: rnlu1805b_g12.y1

Conread position: 1-131
Cow position: chr25:33457708-33457837 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 100
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 67, 0

Conread position: 1-133
Cow position: chr25:14809249-14809380 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 102
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 67, 0

Conread position: 1-140
Cow position: chr25:25051402-25051263 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 109, 67

Conread position: 1-149
Cow position: chr25:4547742-4547596 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 116
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 69, 0

Conread position: 1-157
Cow position: chr25:13823743-13823588 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 140, 70

Conread position: 1-168
Cow position: chr25:15254372-15254207 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 132
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 143, 67

Conread position: 1-174
Cow position: chr25:40931253-40931418 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 131
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 42, 0

Conread position: 1-177
Cow position: chr25:1840300-1840473 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 125
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 161, 67

Conread position: 1-177
Cow position: chr25:33550485-33550661 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 135
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 79, 67

Conread position: 1-189
Cow position: chr25:15463563-15463751 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 137
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 129, 67

Conread position: 1-229
Cow position: chr25:36872334-36872546 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 162
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 69, 0

Conread position: 1-231
Cow position: chr25:20461083-20461301 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 168
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 210, 30

Conread position: 1-238
Cow position: chr25:6683086-6682858 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 183
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 67, 0

Conread position: 1-238
Cow position: chr25:9990134-9989910 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 180
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 67, 0

Conread position: 1-238
Cow position: chr25:10949603-10949374 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 171
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 175, 65

Conread position: 1-238
Cow position: chr25:19129831-19130046 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 176
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 63, 0

Conread position: 1-238
Cow position: chr25:24167719-24167498 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 174
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 21, 67

Conread position: 1-239
Cow position: chr25:9843152-9843374 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 173
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 60, 0

Conread position: 1-240
Cow position: chr25:22261330-22261090 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 171
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 81, 62

Conread position: 1-246
Cow position: chr25:13222876-13223098 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 181
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 238, 67

Conread position: 1-248
Cow position: chr25:7007888-7008123 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 184
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 240, 67

Conread position: 1-248
Cow position: chr25:28597636-28597401 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 194
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 51, 69

Conread position: 1-249
Cow position: chr25:18288792-18288567 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 180
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 52, 0

Conread position: 1-254
Cow position: chr25:22348487-22348250 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 183
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 63, 0

Conread position: 1-254
Cow position: chr25:26679202-26679435 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 176
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 67, 0

Conread position: 1-261
Cow position: chr25:11829938-11829675 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 193
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 110, 10

Conread position: 1-268
Cow position: chr25:12609319-12609564 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 192
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 67, 0

Conread position: 1-277
Cow position: chr25:30279232-30278965 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 200
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 253, 70

Conread position: 2-131
Cow position: chr25:11823453-11823325 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 66, 0

Conread position: 2-252
Cow position: chr25:35762568-35762794 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 190
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 85, 30

Conread position: 3-157
Cow position: chr25:23245024-23244873 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 112
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 65, 0

Conread position: 3-177
Cow position: chr25:22531261-22531428 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 43, 0

Conread position: 3-239
Cow position: chr25:36019688-36019446 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 175
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 128, 64

Conread position: 4-147
Cow position: chr25:14720723-14720863 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 107
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 64, 0

Conread position: 5-167
Cow position: chr25:23505032-23505188 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 119
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 63, 0

Conread position: 5-237
Cow position: chr25:35826305-35826071 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 165
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 73, 66

Conread position: 5-239
Cow position: chr25:19584344-19584562 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 164
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 106, 65

Conread position: 7-131
Cow position: chr25:14157607-14157730 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 95
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 63, 0

Conread position: 7-155
Cow position: chr25:24573050-24573193 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 110
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 56, 0

Conread position: 8-213
Cow position: chr25:31065176-31065363 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 149
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 196, 42

Conread position: 8-237
Cow position: chr25:3744762-3744543 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 175
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 189, 60

Conread position: 8-253
Cow position: chr25:19478658-19478897 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 182
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 60, 0

Conread position: 11-155
Cow position: chr25:41150980-41150835 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 109
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 103, 57

Conread position: 11-157
Cow position: chr25:13272555-13272700 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 108
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 57, 0

Conread position: 11-236
Cow position: chr25:6474101-6473886 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 154
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 57, 0

Conread position: 11-239
Cow position: chr25:21049228-21049004 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 153
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 111, 57

Conread position: 11-246
Cow position: chr25:12195241-12195020 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 181
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 11, 58

Conread position: 11-250
Cow position: chr25:13503419-13503655 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 167
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 57, 0

Conread position: 11-252
Cow position: chr25:11585504-11585735 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 181
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 57, 0

Conread position: 11-256
Cow position: chr25:23917832-23918072 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 177
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 145, 35

Conread position: 11-265
Cow position: chr25:15218122-15218377 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 191
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 131, 37

Conread position: 12-155
Cow position: chr25:36021311-36021449 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 42, 0

Conread position: 12-239
Cow position: chr25:30625096-30624876 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 174
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 58, 0

Conread position: 12-248
Cow position: chr25:15695253-15695479 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 168
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 173, 23

Conread position: 15-160
Cow position: chr25:20202903-20203042 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 53, 0

Conread position: 15-239
Cow position: chr25:34169937-34170162 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 169
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 128, 51

Conread position: 16-239
Cow position: chr25:11841288-11841492 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 168
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 180, 52

Conread position: 16-267
Cow position: chr25:30619055-30619286 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 180
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 43, 0

Conread position: 21-239
Cow position: chr25:13566964-13567177 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 156
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 45, 0

Conread position: 22-250
Cow position: chr25:8347649-8347857 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 165
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 46, 0

Conread position: 25-177
Cow position: chr25:8222909-8223055 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 37, 0

Conread position: 40-267
Cow position: chr25:32907952-32908177 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 162
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 13, 29

Conread position: 52-248
Cow position: chr25:32667244-32667056 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 143
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 18, 0

Conread position: 67-232
Cow position: chr25:20244218-20244064 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 65, 0

Conread position: 67-251
Cow position: chr25:12899768-12899971 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 153
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 67, 0

Conread position: 68-239
Cow position: chr25:18894687-18894518 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 123
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 32, 70

Conread position: 68-239
Cow position: chr25:36136098-36135921 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 133
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 72, 0

Conread position: 68-240
Cow position: chr25:21284918-21285095 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 126
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 59, 0

Conread position: 68-244
Cow position: chr25:7061214-7061033 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 131
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 95, 69

Conread position: 68-250
Cow position: chr25:23323532-23323700 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 137
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 59, 0

Conread position: 68-301
Cow position: chr25:22520379-22520615 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 166
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 93, 69

Conread position: 70-239
Cow position: chr25:1824053-1823898 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 131
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 61, 0

Conread position: 74-239
Cow position: chr25:13805061-13805220 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 130
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 58, 0

Conread position: 74-265
Cow position: chr25:16316206-16316008 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 141
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 56, 0

Conread position: 75-238
Cow position: chr25:22296977-22296821 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 39, 0

Conread position: 77-248
Cow position: chr25:26642858-26643014 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 136
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 57, 0

Conread position: 78-248
Cow position: chr25:10497295-10497476 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 135
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 39, 0

Conread position: 78-248
Cow position: chr25:12509778-12509607 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 125
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 63, 52

Conread position: 91-238
Cow position: chr25:17144500-17144645 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 124, 0

Conread position: 103-239
Cow position: chr25:14211921-14212058 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 40, 0

Conread position: 126-250
Cow position: chr25:13653978-13654102 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 97
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 54, 16

Conread position: 128-238
Cow position: chr25:8223033-8223146 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 93
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 9, 0

Conread position: 128-250
Cow position: chr25:12755407-12755288 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 31, 0

Conread position: 137-265
Cow position: chr25:13822536-13822664 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 96
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 138-239
Cow position: chr25:7012819-7012920 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 91
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 141-239
Cow position: chr25:7329200-7329298 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 81
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 141-265
Cow position: chr25:21894736-21894613 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 106, 114

Conread position: 141-276
Cow position: chr25:33839857-33839987 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 93, 0

Conread position: 142-248
Cow position: chr25:22538440-22538546 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 95
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 9, 39

Conread position: 142-248
Cow position: chr25:36023060-36023166 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 86
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 144-255
Cow position: chr25:7554999-7554888 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 88
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 144-267
Cow position: chr25:14212728-14212603 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 97
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 102, 0

Conread position: 144-282
Cow position: chr25:19808413-19808275 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 104
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 145-263
Cow position: chr25:13453964-13453847 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 95, 0

Conread position: 145-265
Cow position: chr25:36762596-36762712 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 96
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 43, 0

Conread position: 148-248
Cow position: chr25:10003418-10003317 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 86
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 19, 23

Conread position: 149-252
Cow position: chr25:17141206-17141309 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 84
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 149-266
Cow position: chr25:29903738-29903856 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 101, 64

Conread position: 149-271
Cow position: chr25:18934533-18934413 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 91, 0

Conread position: 151-285
Cow position: chr25:22577203-22577073 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 107
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 92, 0

Show alignments to all cow chromosomes.