Cow genome map

Conread name: rnlu1805b_g12.y1

Conread position: 1-153
Cow position: chr28:10172433-10172286 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 67, 0

Conread position: 1-154
Cow position: chr28:3740859-3741008 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 112
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 63, 0

Conread position: 1-155
Cow position: chr28:5204178-5204332 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 138, 67

Conread position: 1-155
Cow position: chr28:5254857-5255009 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 112
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 70, 0

Conread position: 1-155
Cow position: chr28:5684687-5684838 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 112
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 10, 0

Conread position: 1-156
Cow position: chr28:16919185-16919033 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 113
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 67, 0

Conread position: 1-157
Cow position: chr28:4013067-4013221 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 67, 0

Conread position: 1-157
Cow position: chr28:7350637-7350791 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 67, 0

Conread position: 1-157
Cow position: chr28:21868440-21868595 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 114
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 67, 0

Conread position: 1-239
Cow position: chr28:5236621-5236395 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 163
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 69, 0

Conread position: 1-239
Cow position: chr28:11828973-11828759 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 181
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 31, 0

Conread position: 1-239
Cow position: chr28:12619558-12619805 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 180
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 133, 63

Conread position: 1-239
Cow position: chr28:17739808-17740025 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 179
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 48, 0

Conread position: 1-248
Cow position: chr28:13233126-13232877 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 192
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 70, 34

Conread position: 1-250
Cow position: chr28:24082253-24082481 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 177
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 67, 0

Conread position: 1-251
Cow position: chr28:8022119-8021857 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 192
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 130, 67

Conread position: 1-283
Cow position: chr28:19222167-19221890 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 195
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 217, 24

Conread position: 1-286
Cow position: chr28:26220241-26220529 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 67

Conread position: 2-151
Cow position: chr28:22813246-22813386 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 116
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 57, 0

Conread position: 2-153
Cow position: chr28:29416732-29416587 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 64, 0

Conread position: 2-157
Cow position: chr28:4181985-4182140 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 112
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 138, 66

Conread position: 2-161
Cow position: chr28:14649335-14649482 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 2-177
Cow position: chr28:6971364-6971189 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 127
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 137, 69

Conread position: 3-155
Cow position: chr28:4070952-4071099 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 49, 67

Conread position: 3-157
Cow position: chr28:777660-777814 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 113
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 107, 65

Conread position: 3-157
Cow position: chr28:11422828-11422677 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 121
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 138, 65

Conread position: 3-158
Cow position: chr28:2131939-2131786 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 65, 0

Conread position: 3-165
Cow position: chr28:7498162-7498000 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 19, 10

Conread position: 3-238
Cow position: chr28:15043876-15043640 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 171
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 130, 63

Conread position: 3-250
Cow position: chr28:12964555-12964793 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 0

Conread position: 3-268
Cow position: chr28:4834859-4834615 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 192
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 258, 62

Conread position: 4-153
Cow position: chr28:8396322-8396468 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 7, 0

Conread position: 4-238
Cow position: chr28:4158941-4159163 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 176
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 64, 0

Conread position: 4-239
Cow position: chr28:9636471-9636257 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 173
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 205, 64

Conread position: 5-131
Cow position: chr28:3914703-3914829 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 33, 66

Conread position: 5-155
Cow position: chr28:7132100-7131953 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 65, 0

Conread position: 6-131
Cow position: chr28:13474288-13474412 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 96
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 62, 0

Conread position: 8-171
Cow position: chr28:3397207-3397053 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 126
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 29, 0

Conread position: 8-248
Cow position: chr28:25806563-25806806 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 177
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 104, 60

Conread position: 8-250
Cow position: chr28:8408724-8408970 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 169
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 104, 60

Conread position: 8-267
Cow position: chr28:32179687-32179927 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 181
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 144, 38

Conread position: 11-161
Cow position: chr28:14998060-14998207 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 117
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 55, 0

Conread position: 11-174
Cow position: chr28:19026012-19025853 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 48, 37

Conread position: 11-226
Cow position: chr28:2898982-2899188 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 153
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 204, 57

Conread position: 11-237
Cow position: chr28:33052028-33052256 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 160
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 13, 59

Conread position: 11-240
Cow position: chr28:27161333-27161115 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 163
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 57, 0

Conread position: 11-256
Cow position: chr28:7372129-7371894 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 166
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 57, 0

Conread position: 11-264
Cow position: chr28:5144528-5144288 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 177
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 237, 57

Conread position: 15-159
Cow position: chr28:22332525-22332667 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 106
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 55, 0

Conread position: 15-240
Cow position: chr28:29434431-29434206 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 152
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 124, 53

Conread position: 15-247
Cow position: chr28:2752497-2752268 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 167
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 164, 49

Conread position: 15-268
Cow position: chr28:4873348-4873095 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 186
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 128, 43

Conread position: 20-227
Cow position: chr28:4051200-4051415 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 151
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 110, 48

Conread position: 20-239
Cow position: chr28:9418964-9418748 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 155
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 140, 48

Conread position: 20-295
Cow position: chr28:28501235-28501496 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 199
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 39, 49

Conread position: 22-248
Cow position: chr28:22183138-22182923 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 133
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 218, 105

Conread position: 29-248
Cow position: chr28:5366112-5365891 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 151
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 112, 39

Conread position: 34-183
Cow position: chr28:3678377-3678524 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 9, 35

Conread position: 48-284
Cow position: chr28:29500433-29500655 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 175
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 193, 20

Conread position: 50-248
Cow position: chr28:17728100-17727903 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 139
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 65, 11

Conread position: 51-234
Cow position: chr28:3264079-3264251 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 140
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 17, 0

Conread position: 52-223
Cow position: chr28:1632623-1632461 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 16, 0

Conread position: 67-239
Cow position: chr28:3759038-3759197 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 134
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 65, 0

Conread position: 67-252
Cow position: chr28:23641217-23641031 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 163
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 165

Conread position: 67-266
Cow position: chr28:3000278-3000075 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 155
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 9, 0

Conread position: 68-225
Cow position: chr28:657426-657279 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 64, 0

Conread position: 68-237
Cow position: chr28:11115135-11115307 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 121
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 98, 0

Conread position: 68-238
Cow position: chr28:659246-659088 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 126
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 66, 0

Conread position: 68-239
Cow position: chr28:19024482-19024650 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 67, 0

Conread position: 68-239
Cow position: chr28:21103779-21103620 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 128
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 68-248
Cow position: chr28:5867770-5867949 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 130
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 63, 147

Conread position: 70-239
Cow position: chr28:4077295-4077137 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 134
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 63, 0

Conread position: 70-240
Cow position: chr28:7532536-7532370 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 64, 0

Conread position: 71-239
Cow position: chr28:18770132-18770287 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 128
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 56, 0

Conread position: 72-272
Cow position: chr28:6053324-6053519 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 141
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 175, 62

Conread position: 75-248
Cow position: chr28:8383917-8384081 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 127
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 60, 0

Conread position: 77-266
Cow position: chr28:3257046-3257216 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 142
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 51, 0

Conread position: 79-256
Cow position: chr28:14660000-14660180 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 131
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 83, 40

Conread position: 80-239
Cow position: chr28:134025-133880 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 55, 0

Conread position: 116-238
Cow position: chr28:4536593-4536710 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 102
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 79, 28

Conread position: 128-249
Cow position: chr28:4841253-4841131 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 100
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 14, 0

Conread position: 135-267
Cow position: chr28:3397040-3396909 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 107
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 15, 106

Conread position: 144-233
Cow position: chr28:19079693-19079604 (view UCSC Genome Browser custom track)
Alignm length: 90
Alignm identity: 77
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 144-238
Cow position: chr28:19025835-19025741 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 80
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 147-248
Cow position: chr28:8787648-8787748 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 84
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 14, 0

Show alignments to all cow chromosomes.