Cow genome map

Conread name: rnlu1830b_e5.y1

Conread position: 1-316
Cow position: chr1:54116445-54116771 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 228
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 49, 100

Conread position: 1-318
Cow position: chr1:8828218-8828550 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 130

Conread position: 1-318
Cow position: chr1:10005785-10005459 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 231
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 49, 74

Conread position: 1-318
Cow position: chr1:70064311-70064628 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 231
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 29, 25

Conread position: 1-320
Cow position: chr1:52054018-52054353 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 25

Conread position: 1-321
Cow position: chr1:30372102-30372427 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 234
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 49, 120

Conread position: 1-321
Cow position: chr1:37542095-37541777 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 230
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 119, 36

Conread position: 1-321
Cow position: chr1:58528469-58528804 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 236
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 49, 112

Conread position: 1-321
Cow position: chr1:88676652-88677002 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 243
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 49, 252

Conread position: 1-321
Cow position: chr1:93857719-93858055 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 130

Conread position: 1-321
Cow position: chr1:99916636-99916972 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 130

Conread position: 1-321
Cow position: chr1:100591575-100591240 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 122

Conread position: 1-321
Cow position: chr1:100888310-100887975 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 129

Conread position: 1-323
Cow position: chr1:17292664-17292329 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 223
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 49, 124

Conread position: 1-324
Cow position: chr1:29461527-29461861 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 94

Conread position: 1-324
Cow position: chr1:85338076-85338397 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 23

Conread position: 1-326
Cow position: chr1:26446353-26446693 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 1-326
Cow position: chr1:30079140-30079479 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 118

Conread position: 1-326
Cow position: chr1:51488312-51487980 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 233
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 49, 94

Conread position: 1-328
Cow position: chr1:76749191-76748852 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 106

Conread position: 1-329
Cow position: chr1:25120080-25119741 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 234
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 42, 70

Conread position: 1-329
Cow position: chr1:53649849-53650194 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 1-329
Cow position: chr1:68602433-68602089 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 129

Conread position: 1-329
Cow position: chr1:71135100-71135439 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 119

Conread position: 1-330
Cow position: chr1:102431542-102431197 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 120

Conread position: 1-334
Cow position: chr1:51444440-51444790 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 140

Conread position: 1-346
Cow position: chr1:45006171-45006515 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 249
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 46, 140

Conread position: 1-639
Cow position: chr1:51982622-51983284 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 128

Conread position: 2-320
Cow position: chr1:55780070-55780401 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 15

Conread position: 2-321
Cow position: chr1:61220632-61220964 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 241
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 48, 120

Conread position: 3-321
Cow position: chr1:61203583-61203917 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 118

Conread position: 3-332
Cow position: chr1:31317275-31316931 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 237
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 48, 116

Conread position: 3-355
Cow position: chr1:22727491-22727869 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 6-324
Cow position: chr1:14529256-14528933 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 236
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 43, 69

Conread position: 6-326
Cow position: chr1:7200309-7200637 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 216
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 48, 131

Conread position: 7-317
Cow position: chr1:22481457-22481129 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 7-321
Cow position: chr1:33548198-33547868 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 232

Conread position: 7-355
Cow position: chr1:54477005-54477354 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 47

Conread position: 8-321
Cow position: chr1:64717688-64717359 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 221
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 42, 0

Conread position: 8-325
Cow position: chr1:58197234-58196917 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 237
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 43, 102

Conread position: 11-327
Cow position: chr1:24580615-24580946 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 7

Conread position: 11-327
Cow position: chr1:88563707-88563385 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 222

Conread position: 16-318
Cow position: chr1:28677270-28677581 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 229
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 34, 75

Conread position: 23-321
Cow position: chr1:79453541-79453227 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 225
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 27, 98

Conread position: 39-342
Cow position: chr1:96193897-96193603 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 229
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 37, 46

Conread position: 46-318
Cow position: chr1:67289868-67290147 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 192
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 74, 29

Conread position: 46-327
Cow position: chr1:76208775-76208487 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 195
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 73, 31

Conread position: 55-313
Cow position: chr1:5013542-5013273 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 197
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 21, 71

Conread position: 60-329
Cow position: chr1:92196238-92196517 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 89

Conread position: 67-330
Cow position: chr1:32563267-32562993 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 195
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 9, 49

Conread position: 89-320
Cow position: chr1:4452796-4452551 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 179
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 15, 74

Conread position: 120-329
Cow position: chr1:19793024-19793243 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 167
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 43, 110

Conread position: 123-321
Cow position: chr1:12057925-12057719 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 156
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 21, 0

Conread position: 124-318
Cow position: chr1:97076175-97075971 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 151
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 137, 0

Conread position: 126-321
Cow position: chr1:70381083-70380882 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 160
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 141, 52

Conread position: 130-326
Cow position: chr1:68252660-68252863 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 158
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 8, 96

Conread position: 133-329
Cow position: chr1:36235420-36235212 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 147
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 16, 0

Conread position: 135-328
Cow position: chr1:99278651-99278447 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 146
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 6, 0

Conread position: 140-329
Cow position: chr1:71081502-71081302 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 157
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 8, 0

Conread position: 145-332
Cow position: chr1:41736528-41736331 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 140
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 122, 0

Conread position: 151-321
Cow position: chr1:78796720-78796542 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 137
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 107, 0

Conread position: 152-326
Cow position: chr1:31238835-31238651 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 135
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 109, 0

Conread position: 180-318
Cow position: chr1:92433172-92433312 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 74, 84

Conread position: 309-639
Cow position: chr1:89742666-89742324 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 243
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 27, 79

Conread position: 311-562
Cow position: chr1:93858120-93858384 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 196
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 24, 0

Conread position: 311-637
Cow position: chr1:21523372-21523694 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 93

Conread position: 311-639
Cow position: chr1:7162210-7161870 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 271

Conread position: 311-639
Cow position: chr1:24580989-24581329 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 311-639
Cow position: chr1:72462491-72462826 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 0

Conread position: 311-639
Cow position: chr1:89766934-89766585 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 284

Conread position: 314-543
Cow position: chr1:71714109-71714350 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 181
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 27, 0

Conread position: 320-638
Cow position: chr1:86505279-86504954 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 13

Conread position: 323-639
Cow position: chr1:43448410-43448091 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 249

Conread position: 323-639
Cow position: chr1:96135861-96136190 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 201

Conread position: 324-639
Cow position: chr1:95655328-95654997 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 232
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 17, 120

Conread position: 333-639
Cow position: chr1:40310379-40310698 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 229
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 69, 134

Conread position: 333-639
Cow position: chr1:56407952-56408257 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 213
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 69, 185

Conread position: 333-639
Cow position: chr1:59167085-59166768 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 213
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 69, 38

Conread position: 333-639
Cow position: chr1:81925563-81925247 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 223
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 70, 151

Conread position: 333-640
Cow position: chr1:54116861-54117177 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 225
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 71, 281

Conread position: 333-640
Cow position: chr1:59248159-59247841 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 222
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 71, 0

Conread position: 339-639
Cow position: chr1:37646891-37646584 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 0

Conread position: 339-639
Cow position: chr1:68951028-68951331 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 219
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 58, 49

Conread position: 341-639
Cow position: chr1:91799606-91799297 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 145

Conread position: 341-639
Cow position: chr1:91888608-91888299 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 267

Conread position: 349-638
Cow position: chr1:101834022-101834320 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 218
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 45, 127

Conread position: 351-562
Cow position: chr1:73702691-73702468 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 170
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 29, 35

Show alignments to all cow chromosomes.