Cow genome map
| Conread name: | rnlu1830b_e5.y1 |
| Conread position: | 1-313 |
| Cow position: | chr10:38154370-38154699 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-314 |
| Cow position: | chr10:24974435-24974100 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 51, 177 |
| Conread position: | 1-319 |
| Cow position: | chr10:1979759-1979427 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 224 |
| Conread position: | 1-319 |
| Cow position: | chr10:45484782-45484452 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 1-319 |
| Cow position: | chr10:50314847-50315179 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 49, 12 |
| Conread position: | 1-321 |
| Cow position: | chr10:2736237-2736573 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 129 |
| Conread position: | 1-321 |
| Cow position: | chr10:9681946-9681615 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 104 |
| Conread position: | 1-321 |
| Cow position: | chr10:37041227-37041553 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 239 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 49, 90 |
| Conread position: | 1-321 |
| Cow position: | chr10:44866096-44866432 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 49, 71 |
| Conread position: | 1-321 |
| Cow position: | chr10:46194695-46195039 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-321 |
| Cow position: | chr10:58938421-58938087 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 49, 190 |
| Conread position: | 1-322 |
| Cow position: | chr10:14332619-14332282 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 130 |
| Conread position: | 1-325 |
| Cow position: | chr10:23913632-23913293 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 237 |
| Conread position: | 1-326 |
| Cow position: | chr10:2612310-2612646 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 12 |
| Conread position: | 1-326 |
| Cow position: | chr10:49145461-49145808 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 1-328 |
| Cow position: | chr10:22529000-22528660 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 166 |
| Conread position: | 1-328 |
| Cow position: | chr10:28528201-28527859 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 48, 163 |
| Conread position: | 1-329 |
| Cow position: | chr10:60206355-60206694 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 204 |
| Conread position: | 1-330 |
| Cow position: | chr10:6539005-6539349 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 120 |
| Conread position: | 1-330 |
| Cow position: | chr10:25005488-25005831 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 79 |
| Conread position: | 1-330 |
| Cow position: | chr10:39441391-39441734 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 120 |
| Conread position: | 1-341 |
| Cow position: | chr10:47772639-47772991 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 79 |
| Conread position: | 1-537 |
| Cow position: | chr10:57986474-57985899 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 140 |
| Conread position: | 3-318 |
| Cow position: | chr10:20373207-20372874 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 163 |
| Conread position: | 4-321 |
| Cow position: | chr10:40376230-40376546 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 9, 129 |
| Conread position: | 5-363 |
| Cow position: | chr10:32560343-32560714 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 245 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 11, 137 |
| Conread position: | 6-322 |
| Cow position: | chr10:40400400-40400726 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 217 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 44, 134 |
| Conread position: | 7-321 |
| Cow position: | chr10:60723745-60723427 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 39 |
| Conread position: | 8-319 |
| Cow position: | chr10:22978930-22978603 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 15-320 |
| Cow position: | chr10:68095833-68095513 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 35, 216 |
| Conread position: | 17-329 |
| Cow position: | chr10:9446045-9445719 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 20-328 |
| Cow position: | chr10:51864092-51863787 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 234 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 56, 22 |
| Conread position: | 28-341 |
| Cow position: | chr10:60959860-60960184 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 195 |
| Conread position: | 75-354 |
| Cow position: | chr10:3997925-3998203 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 192, 112 |
| Conread position: | 85-323 |
| Cow position: | chr10:6253488-6253251 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 195 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 182, 14 |
| Conread position: | 123-328 |
| Cow position: | chr10:31533792-31534007 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 124-321 |
| Cow position: | chr10:10082731-10082524 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 139-321 |
| Cow position: | chr10:9516985-9517177 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 140-328 |
| Cow position: | chr10:24023221-24023023 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 152-343 |
| Cow position: | chr10:6012960-6012761 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 110, 71 |
| Conread position: | 160-324 |
| Cow position: | chr10:58265476-58265302 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 278-530 |
| Cow position: | chr10:42750125-42750379 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 123, 10 |
| Conread position: | 278-575 |
| Cow position: | chr10:1488138-1488451 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 228 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 16, 244 |
| Conread position: | 311-527 |
| Cow position: | chr10:44732750-44732535 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 171 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 29, 83 |
| Conread position: | 311-639 |
| Cow position: | chr10:10173525-10173859 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 142 |
| Conread position: | 311-639 |
| Cow position: | chr10:20871150-20871484 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 75 |
| Conread position: | 311-639 |
| Cow position: | chr10:22381340-22381680 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 83 |
| Conread position: | 312-639 |
| Cow position: | chr10:325139-324801 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 237 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 28, 77 |
| Conread position: | 322-498 |
| Cow position: | chr10:15619749-15619576 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 20, 82 |
| Conread position: | 323-572 |
| Cow position: | chr10:43288740-43288480 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 198 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 18, 77 |
| Conread position: | 323-572 |
| Cow position: | chr10:53157788-53157523 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 19, 122 |
| Conread position: | 323-629 |
| Cow position: | chr10:48370252-48369939 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 218 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 333-639 |
| Cow position: | chr10:18389805-18389484 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 333-639 |
| Cow position: | chr10:31669914-31670224 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 123 |
| Conread position: | 333-639 |
| Cow position: | chr10:58937998-58937672 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 79, 204 |
| Conread position: | 334-636 |
| Cow position: | chr10:34433692-34434011 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 70, 186 |
| Conread position: | 335-634 |
| Cow position: | chr10:41384620-41384311 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 59, 184 |
| Conread position: | 339-529 |
| Cow position: | chr10:1723279-1723478 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 339-638 |
| Cow position: | chr10:76745-77047 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 226 |
| Conread position: | 339-639 |
| Cow position: | chr10:6719260-6719557 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 83 |
| Conread position: | 342-639 |
| Cow position: | chr10:7737154-7737448 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 59 |
Show alignments to all cow chromosomes.