Cow genome map
| Conread name: | rnlu1830b_e5.y1 |
| Conread position: | 1-316 |
| Cow position: | chr11:17980432-17980105 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 120 |
| Conread position: | 1-317 |
| Cow position: | chr11:29663190-29662871 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 82 |
| Conread position: | 1-318 |
| Cow position: | chr11:3238161-3238495 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 139 |
| Conread position: | 1-319 |
| Cow position: | chr11:12763329-12762993 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 198 |
| Conread position: | 1-319 |
| Cow position: | chr11:49237105-49236781 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 28, 146 |
| Conread position: | 1-320 |
| Cow position: | chr11:7704556-7704879 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 47, 159 |
| Conread position: | 1-320 |
| Cow position: | chr11:21471489-21471817 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 16 |
| Conread position: | 1-320 |
| Cow position: | chr11:73513512-73513178 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 249 |
| Conread position: | 1-321 |
| Cow position: | chr11:7229220-7229556 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 130 |
| Conread position: | 1-321 |
| Cow position: | chr11:19099625-19099289 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 120 |
| Conread position: | 1-321 |
| Cow position: | chr11:41167834-41167498 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 130 |
| Conread position: | 1-321 |
| Cow position: | chr11:59871676-59872006 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 35 |
| Conread position: | 1-322 |
| Cow position: | chr11:16229787-16229457 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 47, 123 |
| Conread position: | 1-324 |
| Cow position: | chr11:18105827-18105486 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 46, 92 |
| Conread position: | 1-325 |
| Cow position: | chr11:30057067-30057395 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 112 |
| Conread position: | 1-326 |
| Cow position: | chr11:67744247-67744582 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 92 |
| Conread position: | 1-327 |
| Cow position: | chr11:27284297-27284637 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 48, 124 |
| Conread position: | 1-327 |
| Cow position: | chr11:49551156-49550815 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 235 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 49, 37 |
| Conread position: | 1-327 |
| Cow position: | chr11:58804960-58804622 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 1-328 |
| Cow position: | chr11:15995346-15995697 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1-329 |
| Cow position: | chr11:11256927-11257249 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 134 |
| Conread position: | 1-329 |
| Cow position: | chr11:25864743-25864435 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 75, 42 |
| Conread position: | 1-329 |
| Cow position: | chr11:33733718-33733382 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 118 |
| Conread position: | 1-329 |
| Cow position: | chr11:44106544-44106886 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 13 |
| Conread position: | 1-344 |
| Cow position: | chr11:12317210-12316851 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 130 |
| Conread position: | 1-354 |
| Cow position: | chr11:76960322-76960676 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 249 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 49, 31 |
| Conread position: | 2-318 |
| Cow position: | chr11:11990859-11991192 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 15 |
| Conread position: | 2-318 |
| Cow position: | chr11:26550338-26550669 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 136 |
| Conread position: | 2-324 |
| Cow position: | chr11:21729159-21728824 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 194 |
| Conread position: | 2-325 |
| Cow position: | chr11:7680824-7681158 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 91 |
| Conread position: | 3-324 |
| Cow position: | chr11:27055853-27055525 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 28, 250 |
| Conread position: | 7-321 |
| Cow position: | chr11:40487023-40487349 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 237 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 48, 17 |
| Conread position: | 8-329 |
| Cow position: | chr11:53855404-53855734 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 42, 105 |
| Conread position: | 14-322 |
| Cow position: | chr11:21477469-21477763 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 58, 33 |
| Conread position: | 16-324 |
| Cow position: | chr11:63167640-63167324 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 81 |
| Conread position: | 18-320 |
| Cow position: | chr11:28381548-28381862 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 32, 156 |
| Conread position: | 26-320 |
| Cow position: | chr11:56227814-56228124 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 158 |
| Conread position: | 46-325 |
| Cow position: | chr11:32978092-32977816 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 32, 89 |
| Conread position: | 47-317 |
| Cow position: | chr11:67746324-67746604 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 123 |
| Conread position: | 52-321 |
| Cow position: | chr11:77034176-77033896 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 24, 74 |
| Conread position: | 57-322 |
| Cow position: | chr11:8246113-8246380 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 47, 13 |
| Conread position: | 71-317 |
| Cow position: | chr11:38842561-38842812 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 5, 55 |
| Conread position: | 76-322 |
| Cow position: | chr11:52298222-52297965 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 0 |
| Conread position: | 106-327 |
| Cow position: | chr11:25332767-25332536 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 14, 113 |
| Conread position: | 111-321 |
| Cow position: | chr11:9079358-9079145 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 126, 112 |
| Conread position: | 120-326 |
| Cow position: | chr11:51477621-51477835 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 171 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 147, 102 |
| Conread position: | 148-324 |
| Cow position: | chr11:64047399-64047585 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 150-338 |
| Cow position: | chr11:65410084-65409887 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 31, 68 |
| Conread position: | 160-322 |
| Cow position: | chr11:35861349-35861177 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 273-530 |
| Cow position: | chr11:16229428-16229162 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 20, 68 |
| Conread position: | 311-568 |
| Cow position: | chr11:62873456-62873187 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 311-608 |
| Cow position: | chr11:41093604-41093294 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 332-639 |
| Cow position: | chr11:38638473-38638788 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 333-568 |
| Cow position: | chr11:48167800-48167555 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 333-572 |
| Cow position: | chr11:67848675-67848426 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 333-639 |
| Cow position: | chr11:19507617-19507933 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 158 |
| Conread position: | 333-639 |
| Cow position: | chr11:80591643-80591952 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 334-638 |
| Cow position: | chr11:37753040-37752721 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 228 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 70, 120 |
| Conread position: | 334-640 |
| Cow position: | chr11:61846664-61846342 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 46, 105 |
| Conread position: | 336-638 |
| Cow position: | chr11:66897441-66897138 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 212 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 68, 186 |
| Conread position: | 341-639 |
| Cow position: | chr11:35738050-35737750 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 132 |
Show alignments to all cow chromosomes.