Cow genome map
| Conread name: | rnlu1830b_e5.y1 |
| Conread position: | 1-314 |
| Cow position: | chr15:10736377-10736703 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 74 |
| Conread position: | 1-318 |
| Cow position: | chr15:29884502-29884180 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 79 |
| Conread position: | 1-318 |
| Cow position: | chr15:30045207-30045549 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-318 |
| Cow position: | chr15:48556528-48556861 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 238 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 49, 139 |
| Conread position: | 1-321 |
| Cow position: | chr15:4727973-4728295 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 233 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 48, 120 |
| Conread position: | 1-321 |
| Cow position: | chr15:7319375-7319710 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 130 |
| Conread position: | 1-321 |
| Cow position: | chr15:15344294-15343963 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 82 |
| Conread position: | 1-321 |
| Cow position: | chr15:18661296-18661631 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 130 |
| Conread position: | 1-322 |
| Cow position: | chr15:11628211-11628547 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 242 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 52, 101 |
| Conread position: | 1-325 |
| Cow position: | chr15:312992-312650 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 240 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 48, 120 |
| Conread position: | 1-329 |
| Cow position: | chr15:9735916-9735573 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 13, 91 |
| Conread position: | 1-329 |
| Cow position: | chr15:13388537-13388196 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 23 |
| Conread position: | 1-329 |
| Cow position: | chr15:36356260-36355916 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 1-639 |
| Cow position: | chr15:1298844-1298174 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 154 |
| Conread position: | 2-325 |
| Cow position: | chr15:1877200-1877536 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 48, 58 |
| Conread position: | 2-326 |
| Cow position: | chr15:16787821-16787495 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 40 |
| Conread position: | 2-330 |
| Cow position: | chr15:42532860-42533204 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 119 |
| Conread position: | 3-321 |
| Cow position: | chr15:6550803-6550469 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 236 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 48, 118 |
| Conread position: | 3-322 |
| Cow position: | chr15:51910725-51910393 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 233 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 3-323 |
| Cow position: | chr15:21911499-21911154 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 11 |
| Conread position: | 3-326 |
| Cow position: | chr15:41359814-41360152 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 102 |
| Conread position: | 3-328 |
| Cow position: | chr15:16740867-16741209 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 242 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 10, 140 |
| Conread position: | 3-329 |
| Cow position: | chr15:9121900-9122233 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 43, 112 |
| Conread position: | 11-318 |
| Cow position: | chr15:52464429-52464106 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 35, 111 |
| Conread position: | 14-326 |
| Cow position: | chr15:14321010-14321312 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 219 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 36, 66 |
| Conread position: | 17-321 |
| Cow position: | chr15:4712732-4713052 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 229 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 33, 104 |
| Conread position: | 20-639 |
| Cow position: | chr15:18229948-18230564 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 34 |
| Conread position: | 34-329 |
| Cow position: | chr15:35739088-35739384 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 49, 12 |
| Conread position: | 39-325 |
| Cow position: | chr15:793908-794201 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 169 |
| Conread position: | 50-315 |
| Cow position: | chr15:17215117-17214854 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 63, 25 |
| Conread position: | 123-324 |
| Cow position: | chr15:2800994-2800777 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 87, 125 |
| Conread position: | 126-639 |
| Cow position: | chr15:22451639-22452174 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 346 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 146, 214 |
| Conread position: | 127-320 |
| Cow position: | chr15:31086557-31086364 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 134, 12 |
| Conread position: | 134-321 |
| Cow position: | chr15:6945488-6945291 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 138-320 |
| Cow position: | chr15:1838063-1837881 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 143, 149 |
| Conread position: | 151-322 |
| Cow position: | chr15:45207941-45207768 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 95, 105 |
| Conread position: | 307-640 |
| Cow position: | chr15:2928467-2928801 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 226 |
| Conread position: | 311-639 |
| Cow position: | chr15:32698126-32698468 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 28, 234 |
| Conread position: | 318-636 |
| Cow position: | chr15:170573-170241 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 238 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 26, 64 |
| Conread position: | 320-640 |
| Cow position: | chr15:17680835-17680523 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 101, 77 |
| Conread position: | 323-574 |
| Cow position: | chr15:42218668-42218934 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 202 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 19, 263 |
| Conread position: | 323-638 |
| Cow position: | chr15:52777800-52778126 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 333-561 |
| Cow position: | chr15:3874386-3874148 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 182 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 70, 109 |
| Conread position: | 333-630 |
| Cow position: | chr15:7319800-7320107 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 266 |
| Conread position: | 333-639 |
| Cow position: | chr15:14578185-14577870 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 27 |
| Conread position: | 333-639 |
| Cow position: | chr15:14871460-14871149 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 60 |
| Conread position: | 339-572 |
| Cow position: | chr15:13545841-13545599 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 339-639 |
| Cow position: | chr15:4918350-4918651 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 65, 90 |
| Conread position: | 341-639 |
| Cow position: | chr15:1082675-1082979 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 345-639 |
| Cow position: | chr15:6226499-6226789 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 211 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 58, 46 |
| Conread position: | 351-575 |
| Cow position: | chr15:40007206-40007423 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 354-636 |
| Cow position: | chr15:17260462-17260753 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
Show alignments to all cow chromosomes.