Cow genome map
| Conread name: | rnlu1830b_e5.y1 |
| Conread position: | 1-303 |
| Cow position: | chr17:40810772-40811082 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 221 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 49, 130 |
| Conread position: | 1-318 |
| Cow position: | chr17:6071556-6071895 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1-318 |
| Cow position: | chr17:20215112-20215434 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 53 |
| Conread position: | 1-320 |
| Cow position: | chr17:20091585-20091269 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 147 |
| Conread position: | 1-321 |
| Cow position: | chr17:1672321-1672654 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 23 |
| Conread position: | 1-321 |
| Cow position: | chr17:2583413-2583744 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 130 |
| Conread position: | 1-321 |
| Cow position: | chr17:11084114-11083778 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 122 |
| Conread position: | 1-321 |
| Cow position: | chr17:13990233-13989908 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 68, 49 |
| Conread position: | 1-321 |
| Cow position: | chr17:14242850-14243183 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 77 |
| Conread position: | 1-321 |
| Cow position: | chr17:18100053-18099717 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 129 |
| Conread position: | 1-321 |
| Cow position: | chr17:20209860-20209518 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 49, 157 |
| Conread position: | 1-323 |
| Cow position: | chr17:27978132-27978462 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 60 |
| Conread position: | 2-325 |
| Cow position: | chr17:13674460-13674131 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 47, 121 |
| Conread position: | 3-330 |
| Cow position: | chr17:33289939-33289616 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 10 |
| Conread position: | 4-313 |
| Cow position: | chr17:6081529-6081839 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 109 |
| Conread position: | 4-329 |
| Cow position: | chr17:17221339-17221677 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 241 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 43, 87 |
| Conread position: | 6-329 |
| Cow position: | chr17:17133370-17133696 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 44, 84 |
| Conread position: | 7-317 |
| Cow position: | chr17:2698580-2698906 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 40, 230 |
| Conread position: | 9-321 |
| Cow position: | chr17:7054228-7053906 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 41, 73 |
| Conread position: | 39-320 |
| Cow position: | chr17:11913685-11913393 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 39-329 |
| Cow position: | chr17:29041835-29041539 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 51 |
| Conread position: | 104-326 |
| Cow position: | chr17:18471301-18471540 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 113, 51 |
| Conread position: | 124-329 |
| Cow position: | chr17:18814305-18814521 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 60, 112 |
| Conread position: | 133-321 |
| Cow position: | chr17:13725423-13725619 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 182-321 |
| Cow position: | chr17:997968-997819 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 311-537 |
| Cow position: | chr17:453262-453496 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 28, 84 |
| Conread position: | 313-584 |
| Cow position: | chr17:40105286-40105012 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 39, 146 |
| Conread position: | 323-636 |
| Cow position: | chr17:29079780-29080095 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 326-630 |
| Cow position: | chr17:13916406-13916095 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 84, 9 |
| Conread position: | 326-639 |
| Cow position: | chr17:13935712-13935389 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 79, 9 |
| Conread position: | 333-499 |
| Cow position: | chr17:15374829-15375003 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 68, 52 |
| Conread position: | 333-572 |
| Cow position: | chr17:20912030-20912259 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 333-639 |
| Cow position: | chr17:20233643-20233949 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 181 |
| Conread position: | 333-640 |
| Cow position: | chr17:36788491-36788185 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 11, 19 |
| Conread position: | 334-499 |
| Cow position: | chr17:6872759-6872586 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 68, 162 |
| Conread position: | 339-639 |
| Cow position: | chr17:23101802-23101485 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 229 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 52, 99 |
| Conread position: | 343-568 |
| Cow position: | chr17:21767356-21767593 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 56, 211 |
Show alignments to all cow chromosomes.