Cow genome map
| Conread name: | rnlu1830b_e5.y1 |
| Conread position: | 1-315 |
| Cow position: | chr3:27866731-27867066 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 131 |
| Conread position: | 1-317 |
| Cow position: | chr3:6896901-6897233 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 154 |
| Conread position: | 1-318 |
| Cow position: | chr3:2904368-2904050 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 49, 70 |
| Conread position: | 1-318 |
| Cow position: | chr3:26532928-26532598 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 49, 12 |
| Conread position: | 1-320 |
| Cow position: | chr3:16114480-16114816 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 232 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 49, 90 |
| Conread position: | 1-320 |
| Cow position: | chr3:40101776-40101449 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 13 |
| Conread position: | 1-320 |
| Cow position: | chr3:49336272-49336602 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 42, 12 |
| Conread position: | 1-321 |
| Cow position: | chr3:18814581-18814916 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 139 |
| Conread position: | 1-321 |
| Cow position: | chr3:22352692-22353024 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 120 |
| Conread position: | 1-321 |
| Cow position: | chr3:23287260-23286926 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 79 |
| Conread position: | 1-321 |
| Cow position: | chr3:24275644-24275982 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 227 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1-321 |
| Cow position: | chr3:24455443-24455127 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 262, 50 |
| Conread position: | 1-321 |
| Cow position: | chr3:35619632-35619963 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 240 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 49, 104 |
| Conread position: | 1-321 |
| Cow position: | chr3:49416773-49416436 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 131 |
| Conread position: | 1-321 |
| Cow position: | chr3:56645256-56644920 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 120 |
| Conread position: | 1-321 |
| Cow position: | chr3:59864557-59864890 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 90 |
| Conread position: | 1-321 |
| Cow position: | chr3:73451239-73450903 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 130 |
| Conread position: | 1-321 |
| Cow position: | chr3:74850072-74849754 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 49, 255 |
| Conread position: | 1-322 |
| Cow position: | chr3:13276207-13275866 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 242 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 49, 120 |
| Conread position: | 1-322 |
| Cow position: | chr3:45615411-45615739 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 48, 89 |
| Conread position: | 1-322 |
| Cow position: | chr3:54863547-54863210 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 243 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 49, 63 |
| Conread position: | 1-323 |
| Cow position: | chr3:17937927-17937605 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 50 |
| Conread position: | 1-323 |
| Cow position: | chr3:77726535-77726848 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 90 |
| Conread position: | 1-328 |
| Cow position: | chr3:3885122-3884769 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 36 |
| Conread position: | 1-329 |
| Cow position: | chr3:54654100-54653756 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 139 |
| Conread position: | 1-330 |
| Cow position: | chr3:43190195-43189853 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 130 |
| Conread position: | 1-402 |
| Cow position: | chr3:32412411-32411997 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 130 |
| Conread position: | 2-321 |
| Cow position: | chr3:5886962-5887294 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 119 |
| Conread position: | 2-321 |
| Cow position: | chr3:19941967-19942293 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 138 |
| Conread position: | 2-321 |
| Cow position: | chr3:31934262-31933927 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 2-321 |
| Cow position: | chr3:72633149-72633483 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 129 |
| Conread position: | 2-329 |
| Cow position: | chr3:27515352-27515679 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 221 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 13, 33 |
| Conread position: | 3-321 |
| Cow position: | chr3:17056988-17056658 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 32, 92 |
| Conread position: | 3-326 |
| Cow position: | chr3:16657790-16657458 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 134 |
| Conread position: | 5-317 |
| Cow position: | chr3:47691069-47691379 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 42, 80 |
| Conread position: | 6-318 |
| Cow position: | chr3:51490382-51490706 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 43, 85 |
| Conread position: | 7-317 |
| Cow position: | chr3:42500151-42500469 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 43, 120 |
| Conread position: | 8-323 |
| Cow position: | chr3:52651855-52651542 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 19 |
| Conread position: | 36-330 |
| Cow position: | chr3:23010468-23010775 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 220 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 40, 24 |
| Conread position: | 39-338 |
| Cow position: | chr3:2117564-2117873 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 86 |
| Conread position: | 39-341 |
| Cow position: | chr3:7677611-7677921 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 68 |
| Conread position: | 46-326 |
| Cow position: | chr3:55454938-55454647 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 45, 93 |
| Conread position: | 56-327 |
| Cow position: | chr3:56099875-56099598 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 39, 22 |
| Conread position: | 62-341 |
| Cow position: | chr3:25753395-25753685 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 78 |
| Conread position: | 119-321 |
| Cow position: | chr3:75479062-75479271 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 112, 6 |
| Conread position: | 119-329 |
| Cow position: | chr3:18460496-18460279 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 95, 78 |
| Conread position: | 134-318 |
| Cow position: | chr3:18252761-18252950 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 129, 57 |
| Conread position: | 135-328 |
| Cow position: | chr3:23944181-23944382 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 138, 28 |
| Conread position: | 139-341 |
| Cow position: | chr3:47340923-47340714 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 73, 162 |
| Conread position: | 155-319 |
| Cow position: | chr3:9639778-9639605 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 112, 23 |
| Conread position: | 183-341 |
| Cow position: | chr3:36403375-36403545 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 50, 46 |
| Conread position: | 193-316 |
| Cow position: | chr3:523481-523615 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 310-571 |
| Cow position: | chr3:14613502-14613776 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 204 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 311-530 |
| Cow position: | chr3:12750372-12750603 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 33, 156 |
| Conread position: | 311-572 |
| Cow position: | chr3:24455065-24454803 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 30, 61 |
| Conread position: | 311-620 |
| Cow position: | chr3:57481270-57480950 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 227 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 25, 77 |
| Conread position: | 311-630 |
| Cow position: | chr3:5887359-5887694 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 29, 215 |
| Conread position: | 311-630 |
| Cow position: | chr3:18814981-18815306 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 278 |
| Conread position: | 311-639 |
| Cow position: | chr3:11784835-11785177 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 237 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 311-639 |
| Cow position: | chr3:47630248-47629912 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 232 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 25, 217 |
| Conread position: | 312-636 |
| Cow position: | chr3:33254387-33254071 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 92 |
| Conread position: | 323-638 |
| Cow position: | chr3:14633747-14633417 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 65 |
| Conread position: | 323-639 |
| Cow position: | chr3:38863183-38863501 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 62 |
| Conread position: | 333-540 |
| Cow position: | chr3:15548302-15548506 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 41, 52 |
| Conread position: | 333-635 |
| Cow position: | chr3:62611255-62611573 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 47, 53 |
| Conread position: | 333-637 |
| Cow position: | chr3:4991409-4991082 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 333-639 |
| Cow position: | chr3:13513384-13513076 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 39 |
| Conread position: | 333-639 |
| Cow position: | chr3:34086717-34086400 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 47, 53 |
| Conread position: | 333-639 |
| Cow position: | chr3:64015662-64015344 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 333-639 |
| Cow position: | chr3:77696982-77696674 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 216 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 74, 189 |
| Conread position: | 334-628 |
| Cow position: | chr3:84152662-84152962 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 211 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 87, 105 |
| Conread position: | 334-639 |
| Cow position: | chr3:79094719-79094408 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 59 |
| Conread position: | 342-639 |
| Cow position: | chr3:54908906-54909224 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 351-639 |
| Cow position: | chr3:3791830-3792131 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 52, 165 |
| Conread position: | 354-568 |
| Cow position: | chr3:64678935-64679154 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 49, 0 |
Show alignments to all cow chromosomes.