Cow genome map
| Conread name: | rnlu1830b_e5.y1 |
| Conread position: | 1-311 |
| Cow position: | chr4:9169211-9168889 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 40, 229 |
| Conread position: | 1-318 |
| Cow position: | chr4:3449676-3450015 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 247 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 49, 136 |
| Conread position: | 1-321 |
| Cow position: | chr4:10135322-10134989 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 130 |
| Conread position: | 1-321 |
| Cow position: | chr4:16641698-16642034 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 130 |
| Conread position: | 1-321 |
| Cow position: | chr4:33496442-33496775 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 235 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 49, 119 |
| Conread position: | 1-321 |
| Cow position: | chr4:43883973-43884309 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 130 |
| Conread position: | 1-321 |
| Cow position: | chr4:44646867-44646531 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 49, 29 |
| Conread position: | 1-322 |
| Cow position: | chr4:20090991-20091317 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 50 |
| Conread position: | 1-322 |
| Cow position: | chr4:29034494-29034819 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 238 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 49, 140 |
| Conread position: | 1-323 |
| Cow position: | chr4:68880393-68880735 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 128 |
| Conread position: | 1-325 |
| Cow position: | chr4:21363960-21364287 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 49, 87 |
| Conread position: | 1-327 |
| Cow position: | chr4:36754665-36755006 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 249 |
| Conread position: | 1-329 |
| Cow position: | chr4:65581395-65581743 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 2-313 |
| Cow position: | chr4:48502728-48503050 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 48, 32 |
| Conread position: | 2-317 |
| Cow position: | chr4:12840822-12841156 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 122 |
| Conread position: | 2-321 |
| Cow position: | chr4:66174441-66174105 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 22 |
| Conread position: | 3-327 |
| Cow position: | chr4:42639412-42639074 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 13, 167 |
| Conread position: | 4-328 |
| Cow position: | chr4:2139945-2140281 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 15 |
| Conread position: | 6-330 |
| Cow position: | chr4:52086041-52086382 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 120 |
| Conread position: | 7-319 |
| Cow position: | chr4:10614308-10613978 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 33, 86 |
| Conread position: | 30-322 |
| Cow position: | chr4:22743309-22743600 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 19, 24 |
| Conread position: | 41-323 |
| Cow position: | chr4:16606250-16605957 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 46-318 |
| Cow position: | chr4:65416252-65415968 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 30, 117 |
| Conread position: | 46-329 |
| Cow position: | chr4:19140932-19141226 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 46-330 |
| Cow position: | chr4:2191365-2191069 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 29, 80 |
| Conread position: | 55-321 |
| Cow position: | chr4:43896567-43896281 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 21, 71 |
| Conread position: | 61-321 |
| Cow position: | chr4:1006838-1007108 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 198 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 15, 117 |
| Conread position: | 123-341 |
| Cow position: | chr4:43867462-43867246 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 130, 121 |
| Conread position: | 125-321 |
| Cow position: | chr4:7806178-7806384 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 164 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 128-317 |
| Cow position: | chr4:15119000-15119197 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 139, 25 |
| Conread position: | 138-321 |
| Cow position: | chr4:47269190-47269383 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 139-319 |
| Cow position: | chr4:28612915-28613095 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 129, 58 |
| Conread position: | 139-325 |
| Cow position: | chr4:54170446-54170645 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 160-320 |
| Cow position: | chr4:11872804-11872635 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 102, 64 |
| Conread position: | 169-330 |
| Cow position: | chr4:58802873-58802709 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 170-327 |
| Cow position: | chr4:1462349-1462192 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 60, 53 |
| Conread position: | 297-537 |
| Cow position: | chr4:16239799-16239551 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 99, 145 |
| Conread position: | 307-639 |
| Cow position: | chr4:22101932-22101591 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 297 |
| Conread position: | 307-639 |
| Cow position: | chr4:46667932-46668259 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 95 |
| Conread position: | 311-638 |
| Cow position: | chr4:47752599-47752919 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 87 |
| Conread position: | 311-639 |
| Cow position: | chr4:5610731-5610395 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 76 |
| Conread position: | 311-639 |
| Cow position: | chr4:33020351-33020012 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 311-639 |
| Cow position: | chr4:33171437-33171771 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 115 |
| Conread position: | 323-518 |
| Cow position: | chr4:1462115-1461905 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 333-496 |
| Cow position: | chr4:26400078-26400247 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 333-517 |
| Cow position: | chr4:11193266-11193459 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 45, 116 |
| Conread position: | 333-530 |
| Cow position: | chr4:31587734-31587537 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 74, 177 |
| Conread position: | 333-633 |
| Cow position: | chr4:65464733-65464428 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 192 |
| Conread position: | 333-639 |
| Cow position: | chr4:9005636-9005951 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 221 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 74, 246 |
| Conread position: | 334-636 |
| Cow position: | chr4:10838002-10837690 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 227 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 69, 103 |
| Conread position: | 334-636 |
| Cow position: | chr4:58194081-58194396 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 336-629 |
| Cow position: | chr4:41469905-41469594 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 339-636 |
| Cow position: | chr4:49814650-49814343 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 339-639 |
| Cow position: | chr4:26008827-26009120 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 46 |
| Conread position: | 339-639 |
| Cow position: | chr4:43370488-43370176 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 27 |
| Conread position: | 344-639 |
| Cow position: | chr4:22052098-22051794 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 153 |
| Conread position: | 351-559 |
| Cow position: | chr4:14737312-14737520 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 52, 153 |
| Conread position: | 363-639 |
| Cow position: | chr4:61272237-61271955 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 41, 82 |
Show alignments to all cow chromosomes.