Cow genome map
| Conread name: | rnlu1830b_e5.y1 |
| Conread position: | 1-313 |
| Cow position: | chr5:26466620-26466932 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 7 |
| Conread position: | 1-317 |
| Cow position: | chr5:3789208-3789535 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 113 |
| Conread position: | 1-320 |
| Cow position: | chr5:18558424-18558102 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 105 |
| Conread position: | 1-321 |
| Cow position: | chr5:10921825-10922161 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 130 |
| Conread position: | 1-321 |
| Cow position: | chr5:12921378-12921713 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 122 |
| Conread position: | 1-321 |
| Cow position: | chr5:29742577-29742245 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 82 |
| Conread position: | 1-321 |
| Cow position: | chr5:49565554-49565880 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 49, 29 |
| Conread position: | 1-322 |
| Cow position: | chr5:17027058-17027382 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 238 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 49, 23 |
| Conread position: | 1-324 |
| Cow position: | chr5:33775789-33775468 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 81 |
| Conread position: | 1-325 |
| Cow position: | chr5:62159944-62159606 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1-326 |
| Cow position: | chr5:7141121-7140779 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 243 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 18, 129 |
| Conread position: | 1-329 |
| Cow position: | chr5:2917444-2917785 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 22 |
| Conread position: | 1-341 |
| Cow position: | chr5:21827806-21828158 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 41 |
| Conread position: | 1-567 |
| Cow position: | chr5:47854815-47855388 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 44 |
| Conread position: | 2-321 |
| Cow position: | chr5:55631045-55631380 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 119 |
| Conread position: | 2-329 |
| Cow position: | chr5:50899615-50899947 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 124 |
| Conread position: | 3-329 |
| Cow position: | chr5:18491388-18491732 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 146 |
| Conread position: | 5-320 |
| Cow position: | chr5:34524253-34523929 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 229 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 21, 39 |
| Conread position: | 5-329 |
| Cow position: | chr5:23648445-23648106 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 238 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 7-321 |
| Cow position: | chr5:31921048-31921374 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 42, 122 |
| Conread position: | 12-321 |
| Cow position: | chr5:15856237-15855916 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 38, 156 |
| Conread position: | 44-322 |
| Cow position: | chr5:12558548-12558261 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 207 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 21, 5 |
| Conread position: | 64-324 |
| Cow position: | chr5:45941939-45941679 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 198, 14 |
| Conread position: | 65-320 |
| Cow position: | chr5:15362093-15362353 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 109-321 |
| Cow position: | chr5:50599153-50599373 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 175 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 158, 114 |
| Conread position: | 120-324 |
| Cow position: | chr5:72007788-72007574 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 8, 18 |
| Conread position: | 155-321 |
| Cow position: | chr5:36724584-36724412 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 98, 22 |
| Conread position: | 311-639 |
| Cow position: | chr5:41067392-41067730 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 233 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 25, 241 |
| Conread position: | 323-636 |
| Cow position: | chr5:29432196-29431881 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 81, 162 |
| Conread position: | 323-639 |
| Cow position: | chr5:43991669-43991999 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 235 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 57, 16 |
| Conread position: | 331-639 |
| Cow position: | chr5:66816184-66815874 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 8 |
| Conread position: | 332-636 |
| Cow position: | chr5:50201594-50201279 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 20, 13 |
| Conread position: | 333-501 |
| Cow position: | chr5:40346701-40346531 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 47, 24 |
| Conread position: | 333-573 |
| Cow position: | chr5:26461035-26461271 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 71, 108 |
| Conread position: | 333-574 |
| Cow position: | chr5:24643419-24643170 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 120 |
| Conread position: | 333-609 |
| Cow position: | chr5:48405606-48405319 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 333-636 |
| Cow position: | chr5:53855105-53855406 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 41, 193 |
| Conread position: | 333-639 |
| Cow position: | chr5:6032391-6032702 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 58 |
| Conread position: | 333-639 |
| Cow position: | chr5:16206753-16206435 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 333-639 |
| Cow position: | chr5:35762688-35762997 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 222 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 70, 48 |
| Conread position: | 339-639 |
| Cow position: | chr5:41976436-41976137 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 48 |
| Conread position: | 352-636 |
| Cow position: | chr5:57613644-57613346 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 213 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 52, 182 |
Show alignments to all cow chromosomes.