Cow genome map
| Conread name: | rnlu1830b_e5.y1 |
| Conread position: | 1-315 |
| Cow position: | chr6:15181274-15181606 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 235 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1-316 |
| Cow position: | chr6:32286673-32287001 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 110 |
| Conread position: | 1-318 |
| Cow position: | chr6:41677053-41677380 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 238 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 46, 72 |
| Conread position: | 1-319 |
| Cow position: | chr6:47154532-47154848 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 49, 82 |
| Conread position: | 1-321 |
| Cow position: | chr6:1498318-1498656 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 23 |
| Conread position: | 1-321 |
| Cow position: | chr6:20553122-20552788 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 139 |
| Conread position: | 1-321 |
| Cow position: | chr6:39999338-39999004 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 79 |
| Conread position: | 1-321 |
| Cow position: | chr6:40550581-40550245 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 120 |
| Conread position: | 1-322 |
| Cow position: | chr6:11193467-11193126 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 25 |
| Conread position: | 1-322 |
| Cow position: | chr6:47380785-47381139 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-322 |
| Cow position: | chr6:60332462-60332800 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 130 |
| Conread position: | 1-324 |
| Cow position: | chr6:3893518-3893180 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 190 |
| Conread position: | 1-326 |
| Cow position: | chr6:28481451-28481785 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 12 |
| Conread position: | 1-341 |
| Cow position: | chr6:46633238-46633578 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 122 |
| Conread position: | 1-402 |
| Cow position: | chr6:6557080-6557485 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 130 |
| Conread position: | 2-319 |
| Cow position: | chr6:35416852-35416521 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 100 |
| Conread position: | 2-322 |
| Cow position: | chr6:19441330-19441661 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 47, 93 |
| Conread position: | 4-321 |
| Cow position: | chr6:182418-182098 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 46, 68 |
| Conread position: | 5-334 |
| Cow position: | chr6:12534844-12535182 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 41, 142 |
| Conread position: | 6-325 |
| Cow position: | chr6:44494334-44494658 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 32, 86 |
| Conread position: | 7-320 |
| Cow position: | chr6:55386591-55386910 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 220 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 31, 115 |
| Conread position: | 7-321 |
| Cow position: | chr6:1263287-1263611 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 232 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 43, 114 |
| Conread position: | 7-321 |
| Cow position: | chr6:3485294-3484964 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 132 |
| Conread position: | 7-321 |
| Cow position: | chr6:11722083-11721753 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 236 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 36, 134 |
| Conread position: | 7-321 |
| Cow position: | chr6:60876421-60876751 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 124 |
| Conread position: | 9-341 |
| Cow position: | chr6:9840008-9839661 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 118 |
| Conread position: | 28-320 |
| Cow position: | chr6:54472494-54472201 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 67 |
| Conread position: | 28-335 |
| Cow position: | chr6:61065759-61066068 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 225, 15 |
| Conread position: | 31-410 |
| Cow position: | chr6:12099667-12100044 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 260 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 17, 45 |
| Conread position: | 49-329 |
| Cow position: | chr6:59507397-59507671 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 27, 117 |
| Conread position: | 56-322 |
| Cow position: | chr6:65941829-65941553 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 183, 59 |
| Conread position: | 75-318 |
| Cow position: | chr6:653598-653345 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 41, 50 |
| Conread position: | 79-329 |
| Cow position: | chr6:34548237-34548496 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 183, 81 |
| Conread position: | 109-329 |
| Cow position: | chr6:57473495-57473724 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 152, 10 |
| Conread position: | 113-323 |
| Cow position: | chr6:58036519-58036738 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 147, 25 |
| Conread position: | 133-321 |
| Cow position: | chr6:48873067-48872869 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 165-316 |
| Cow position: | chr6:35884100-35884259 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 311-562 |
| Cow position: | chr6:1835942-1836209 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 311-630 |
| Cow position: | chr6:20552724-20552391 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 311-640 |
| Cow position: | chr6:17556762-17557097 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 237 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 25, 164 |
| Conread position: | 323-635 |
| Cow position: | chr6:50527043-50527376 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 237 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 323-639 |
| Cow position: | chr6:47339965-47339635 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 66 |
| Conread position: | 333-572 |
| Cow position: | chr6:29084845-29084595 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 333-630 |
| Cow position: | chr6:33509001-33509293 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 333-639 |
| Cow position: | chr6:47988472-47988782 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 95 |
| Conread position: | 334-572 |
| Cow position: | chr6:22216156-22215927 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 46, 52 |
| Conread position: | 334-636 |
| Cow position: | chr6:59507752-59508066 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 13 |
| Conread position: | 341-640 |
| Cow position: | chr6:65898609-65898299 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 182 |
Show alignments to all cow chromosomes.