Cow genome map
| Conread name: | rnlu1830b_e5.y1 |
| Conread position: | 1-317 |
| Cow position: | chr9:26087957-26087625 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 121 |
| Conread position: | 1-318 |
| Cow position: | chr9:49981552-49981877 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 65 |
| Conread position: | 1-319 |
| Cow position: | chr9:20988347-20988677 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 82 |
| Conread position: | 1-319 |
| Cow position: | chr9:21461524-21461842 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 237 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 261, 24 |
| Conread position: | 1-321 |
| Cow position: | chr9:1991504-1991170 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 120 |
| Conread position: | 1-321 |
| Cow position: | chr9:12161643-12161980 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 119 |
| Conread position: | 1-321 |
| Cow position: | chr9:17302925-17302596 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 125 |
| Conread position: | 1-321 |
| Cow position: | chr9:18071532-18071865 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 27 |
| Conread position: | 1-322 |
| Cow position: | chr9:4284271-4284606 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 53, 154 |
| Conread position: | 1-322 |
| Cow position: | chr9:19078913-19079249 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 124 |
| Conread position: | 1-323 |
| Cow position: | chr9:4647592-4647259 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 48, 19 |
| Conread position: | 1-326 |
| Cow position: | chr9:10857068-10857421 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 255 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 49, 200 |
| Conread position: | 1-327 |
| Cow position: | chr9:1640303-1640645 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 231 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 49, 240 |
| Conread position: | 1-327 |
| Cow position: | chr9:23421634-23421973 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 229 |
| Conread position: | 1-329 |
| Cow position: | chr9:40143303-40142961 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 130 |
| Conread position: | 1-329 |
| Cow position: | chr9:59540497-59540823 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 238 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 76, 49 |
| Conread position: | 2-322 |
| Cow position: | chr9:23028967-23028645 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 35 |
| Conread position: | 2-329 |
| Cow position: | chr9:3545876-3546210 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 48, 175 |
| Conread position: | 3-322 |
| Cow position: | chr9:33845069-33845402 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 47, 21 |
| Conread position: | 3-325 |
| Cow position: | chr9:29300958-29300634 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 47, 25 |
| Conread position: | 4-338 |
| Cow position: | chr9:61237716-61237363 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 46, 28 |
| Conread position: | 5-328 |
| Cow position: | chr9:5608713-5608382 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 45, 89 |
| Conread position: | 7-329 |
| Cow position: | chr9:1983429-1983761 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 60 |
| Conread position: | 8-322 |
| Cow position: | chr9:53603644-53603327 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 259, 0 |
| Conread position: | 8-323 |
| Cow position: | chr9:34567703-34568029 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 72 |
| Conread position: | 27-326 |
| Cow position: | chr9:28774193-28773881 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 169 |
| Conread position: | 28-318 |
| Cow position: | chr9:50728142-50727839 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 208 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 21, 32 |
| Conread position: | 75-321 |
| Cow position: | chr9:29106003-29106259 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 41, 50 |
| Conread position: | 100-320 |
| Cow position: | chr9:20900127-20900354 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 174 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 163, 141 |
| Conread position: | 120-320 |
| Cow position: | chr9:50689074-50689280 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 147, 14 |
| Conread position: | 133-314 |
| Cow position: | chr9:11478072-11477883 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 134, 56 |
| Conread position: | 133-317 |
| Cow position: | chr9:33659435-33659240 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 147-326 |
| Cow position: | chr9:59454697-59454508 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 149-320 |
| Cow position: | chr9:11410404-11410585 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 185-321 |
| Cow position: | chr9:28725837-28725983 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 311-639 |
| Cow position: | chr9:13313006-13313342 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 271 |
| Conread position: | 311-639 |
| Cow position: | chr9:56301136-56300798 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 239 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 25, 138 |
| Conread position: | 317-638 |
| Cow position: | chr9:19743640-19743325 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 90 |
| Conread position: | 319-535 |
| Cow position: | chr9:20679529-20679745 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 33, 86 |
| Conread position: | 333-562 |
| Cow position: | chr9:1938570-1938346 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 70, 96 |
| Conread position: | 333-563 |
| Cow position: | chr9:62699446-62699222 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 42, 53 |
| Conread position: | 333-564 |
| Cow position: | chr9:5500353-5500106 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 333-639 |
| Cow position: | chr9:126034-125718 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 220 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 333-639 |
| Cow position: | chr9:1570313-1570009 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 70, 121 |
| Conread position: | 333-639 |
| Cow position: | chr9:27010077-27009774 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 57, 69 |
| Conread position: | 333-639 |
| Cow position: | chr9:39971683-39971381 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 53 |
| Conread position: | 334-639 |
| Cow position: | chr9:10665379-10665692 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 144 |
| Conread position: | 339-639 |
| Cow position: | chr9:30401754-30402069 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 64, 108 |
| Conread position: | 351-639 |
| Cow position: | chr9:19382983-19382672 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 226 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 53, 273 |
Show alignments to all cow chromosomes.