Cow genome map
| Conread name: | rnlu1830b_e5.y1 |
| Conread position: | 1-321 |
| Cow position: | chrX:13406330-13405998 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 130 |
| Conread position: | 1-321 |
| Cow position: | chrX:20953490-20953825 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 239 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 49, 13 |
| Conread position: | 1-321 |
| Cow position: | chrX:21226435-21226769 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 130 |
| Conread position: | 1-321 |
| Cow position: | chrX:21582399-21582735 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 120 |
| Conread position: | 1-321 |
| Cow position: | chrX:23452491-23452153 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1-321 |
| Cow position: | chrX:26530929-26531265 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 130 |
| Conread position: | 1-321 |
| Cow position: | chrX:29722167-29722511 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 241 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 49, 252 |
| Conread position: | 1-321 |
| Cow position: | chrX:30180968-30180635 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 139 |
| Conread position: | 1-321 |
| Cow position: | chrX:30229156-30228822 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 129 |
| Conread position: | 1-321 |
| Cow position: | chrX:32584974-32584639 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 120 |
| Conread position: | 1-321 |
| Cow position: | chrX:40693776-40693437 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 128 |
| Conread position: | 1-322 |
| Cow position: | chrX:13430830-13430496 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 39, 86 |
| Conread position: | 1-323 |
| Cow position: | chrX:11744226-11744561 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 90 |
| Conread position: | 1-324 |
| Cow position: | chrX:7276918-7277239 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 250 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 50, 33 |
| Conread position: | 1-328 |
| Cow position: | chrX:7572347-7572685 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 109 |
| Conread position: | 1-328 |
| Cow position: | chrX:36839669-36840005 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 245 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 46, 169 |
| Conread position: | 1-329 |
| Cow position: | chrX:21832842-21833171 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 131 |
| Conread position: | 1-329 |
| Cow position: | chrX:25451291-25451628 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 236 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 13, 133 |
| Conread position: | 1-329 |
| Cow position: | chrX:26508189-26508525 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 80 |
| Conread position: | 1-329 |
| Cow position: | chrX:39352654-39352335 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 94 |
| Conread position: | 1-329 |
| Cow position: | chrX:44901100-44901435 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 243 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 49, 141 |
| Conread position: | 2-317 |
| Cow position: | chrX:4481938-4482244 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 235 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 76, 22 |
| Conread position: | 2-321 |
| Cow position: | chrX:18193647-18193982 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 129 |
| Conread position: | 2-321 |
| Cow position: | chrX:24292706-24292387 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 234 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 48, 119 |
| Conread position: | 2-321 |
| Cow position: | chrX:27095094-27095421 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 242 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 48, 93 |
| Conread position: | 2-322 |
| Cow position: | chrX:36691796-36692126 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 48, 5 |
| Conread position: | 3-327 |
| Cow position: | chrX:35287383-35287723 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 239 |
| Conread position: | 4-329 |
| Cow position: | chrX:10413016-10412676 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 8-321 |
| Cow position: | chrX:11991187-11990858 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 16 |
| Conread position: | 10-329 |
| Cow position: | chrX:39559383-39559063 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 11-318 |
| Cow position: | chrX:3144596-3144917 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 39, 19 |
| Conread position: | 14-318 |
| Cow position: | chrX:8400580-8400272 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 213 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 36, 111 |
| Conread position: | 18-322 |
| Cow position: | chrX:23415713-23415402 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 54, 25 |
| Conread position: | 20-321 |
| Cow position: | chrX:22810864-22811182 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 227 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 30, 121 |
| Conread position: | 21-315 |
| Cow position: | chrX:18455794-18455484 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 222 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 29, 59 |
| Conread position: | 25-318 |
| Cow position: | chrX:28867035-28866723 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 28-321 |
| Cow position: | chrX:12178657-12178971 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 22, 86 |
| Conread position: | 45-321 |
| Cow position: | chrX:12465043-12465324 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 31, 81 |
| Conread position: | 46-313 |
| Cow position: | chrX:17158801-17158527 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 212, 55 |
| Conread position: | 46-321 |
| Cow position: | chrX:33822098-33822382 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 40, 16 |
| Conread position: | 65-321 |
| Cow position: | chrX:40384081-40384337 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 12, 51 |
| Conread position: | 65-321 |
| Cow position: | chrX:40601154-40601410 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 12, 51 |
| Conread position: | 83-324 |
| Cow position: | chrX:6543311-6543557 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 184, 12 |
| Conread position: | 85-317 |
| Cow position: | chrX:16021329-16021088 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 177, 63 |
| Conread position: | 86-326 |
| Cow position: | chrX:38935470-38935719 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 35, 64 |
| Conread position: | 120-329 |
| Cow position: | chrX:2524651-2524433 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 147, 60 |
| Conread position: | 123-321 |
| Cow position: | chrX:865480-865688 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 124-321 |
| Cow position: | chrX:18898564-18898357 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 126-530 |
| Cow position: | chrX:41819493-41819084 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 141, 6 |
| Conread position: | 127-330 |
| Cow position: | chrX:30354482-30354685 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 163, 127 |
| Conread position: | 146-329 |
| Cow position: | chrX:35388812-35388619 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 159-321 |
| Cow position: | chrX:8104161-8103990 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 306-639 |
| Cow position: | chrX:2048466-2048811 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 28, 107 |
| Conread position: | 310-566 |
| Cow position: | chrX:12852314-12852061 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 189, 92 |
| Conread position: | 311-639 |
| Cow position: | chrX:1550322-1550658 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 311-639 |
| Cow position: | chrX:24441882-24441539 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 31, 285 |
| Conread position: | 322-636 |
| Cow position: | chrX:36218926-36219238 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 12, 125 |
| Conread position: | 333-496 |
| Cow position: | chrX:31249259-31249431 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 333-589 |
| Cow position: | chrX:14924434-14924693 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 245 |
| Conread position: | 333-636 |
| Cow position: | chrX:20976665-20976355 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 217 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 71, 87 |
| Conread position: | 333-639 |
| Cow position: | chrX:36557171-36557498 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 69, 192 |
| Conread position: | 333-639 |
| Cow position: | chrX:45200499-45200180 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 71, 194 |
| Conread position: | 334-637 |
| Cow position: | chrX:6543648-6543962 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 202 |
| Conread position: | 335-571 |
| Cow position: | chrX:6659913-6660149 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 69, 135 |
| Conread position: | 336-640 |
| Cow position: | chrX:16324859-16324538 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 346-639 |
| Cow position: | chrX:23121792-23122092 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 0 |
Show alignments to all cow chromosomes.