Cow genome map
| Conread name: | rnlu1834b_h15.y1 |
| Conread position: | 24-366 |
| Cow position: | chr1:61554348-61554003 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 253 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 16, 35 |
| Conread position: | 25-367 |
| Cow position: | chr1:57854221-57854573 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 13, 69 |
| Conread position: | 38-387 |
| Cow position: | chr1:81454301-81454646 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 253 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 62, 16 |
| Conread position: | 41-280 |
| Cow position: | chr1:41607210-41607444 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 13, 20 |
| Conread position: | 43-349 |
| Cow position: | chr1:13681248-13680926 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 25, 213 |
| Conread position: | 48-370 |
| Cow position: | chr1:23086640-23086316 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 235 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 20, 44 |
| Conread position: | 63-293 |
| Cow position: | chr1:4264853-4264623 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 33, 21 |
| Conread position: | 63-366 |
| Cow position: | chr1:20807225-20806926 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 220 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 15, 29 |
| Conread position: | 63-370 |
| Cow position: | chr1:60860019-60860328 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 226 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 33, 25 |
| Conread position: | 66-367 |
| Cow position: | chr1:17092178-17092484 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 209 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 30, 18 |
| Conread position: | 77-366 |
| Cow position: | chr1:90845621-90845335 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 19, 46 |
| Conread position: | 82-374 |
| Cow position: | chr1:20264769-20264472 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 211 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 14, 60 |
| Conread position: | 105-273 |
| Cow position: | chr1:70178102-70178269 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 122, 35 |
| Conread position: | 129-380 |
| Cow position: | chr1:94409180-94408937 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 98, 11 |
| Conread position: | 129-385 |
| Cow position: | chr1:4279788-4279531 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 98, 11 |
| Conread position: | 142-366 |
| Cow position: | chr1:85000910-85000683 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 75, 105 |
| Conread position: | 143-315 |
| Cow position: | chr1:93391847-93392022 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 84, 105 |
| Conread position: | 144-282 |
| Cow position: | chr1:86643193-86643055 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 128, 100 |
| Conread position: | 144-284 |
| Cow position: | chr1:33914333-33914192 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 83, 40 |
| Conread position: | 144-297 |
| Cow position: | chr1:8142839-8142997 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 40, 28 |
| Conread position: | 144-297 |
| Cow position: | chr1:57893286-57893443 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 144-362 |
| Cow position: | chr1:92708985-92709209 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 79, 104 |
| Conread position: | 144-366 |
| Cow position: | chr1:55114532-55114757 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 81, 104 |
| Conread position: | 144-366 |
| Cow position: | chr1:70171639-70171420 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 45, 57 |
| Conread position: | 144-366 |
| Cow position: | chr1:94753977-94754199 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 83, 158 |
| Conread position: | 144-370 |
| Cow position: | chr1:31126996-31126766 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 83, 103 |
| Conread position: | 144-370 |
| Cow position: | chr1:89915719-89915949 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 83, 103 |
| Conread position: | 144-371 |
| Cow position: | chr1:83321674-83321438 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 71, 104 |
| Conread position: | 144-374 |
| Cow position: | chr1:24509456-24509686 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 83, 103 |
| Conread position: | 144-385 |
| Cow position: | chr1:71086877-71087118 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 83, 103 |
| Conread position: | 144-386 |
| Cow position: | chr1:43588495-43588733 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 83, 104 |
| Conread position: | 144-395 |
| Cow position: | chr1:6968590-6968846 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 82, 22 |
| Conread position: | 146-366 |
| Cow position: | chr1:94390589-94390805 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 76, 42 |
| Conread position: | 148-395 |
| Cow position: | chr1:81491314-81491564 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 79, 36 |
| Conread position: | 149-316 |
| Cow position: | chr1:7489324-7489159 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 78, 98 |
| Conread position: | 149-316 |
| Cow position: | chr1:46389164-46389329 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 71, 98 |
| Conread position: | 149-316 |
| Cow position: | chr1:100045940-100046101 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 149-323 |
| Cow position: | chr1:13313926-13314109 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 78, 98 |
| Conread position: | 149-338 |
| Cow position: | chr1:31979098-31978905 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 128, 99 |
| Conread position: | 149-338 |
| Cow position: | chr1:67902295-67902109 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 78, 98 |
| Conread position: | 149-345 |
| Cow position: | chr1:61606470-61606662 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 71, 97 |
| Conread position: | 149-348 |
| Cow position: | chr1:35544512-35544313 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 78, 97 |
| Conread position: | 149-349 |
| Cow position: | chr1:24684492-24684292 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 84, 98 |
| Conread position: | 149-349 |
| Cow position: | chr1:89407464-89407272 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 73, 53 |
| Conread position: | 149-366 |
| Cow position: | chr1:57357244-57357471 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 78, 44 |
| Conread position: | 149-370 |
| Cow position: | chr1:14383178-14382953 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 78, 18 |
| Conread position: | 149-371 |
| Cow position: | chr1:15983874-15983657 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 78, 99 |
| Conread position: | 149-385 |
| Cow position: | chr1:24763998-24763764 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 78, 98 |
| Conread position: | 149-385 |
| Cow position: | chr1:100397424-100397656 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 216, 95 |
| Conread position: | 150-315 |
| Cow position: | chr1:13992425-13992593 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 75, 98 |
| Conread position: | 150-348 |
| Cow position: | chr1:94761493-94761300 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 72, 97 |
| Conread position: | 150-385 |
| Cow position: | chr1:6309454-6309220 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 77, 97 |
| Conread position: | 151-354 |
| Cow position: | chr1:84760723-84760510 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 76, 96 |
| Conread position: | 161-394 |
| Cow position: | chr1:64753277-64753519 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 60, 173 |
| Conread position: | 169-366 |
| Cow position: | chr1:93244690-93244890 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 50, 81 |
| Conread position: | 186-323 |
| Cow position: | chr1:13738112-13737969 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 47, 66 |
| Conread position: | 195-395 |
| Cow position: | chr1:80275840-80275635 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 89, 53 |
Show alignments to all cow chromosomes.