Cow genome map
| Conread name: | rnlu1834b_h15.y1 |
| Conread position: | 37-367 |
| Cow position: | chr11:64813841-64814179 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 245 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 30, 97 |
| Conread position: | 40-366 |
| Cow position: | chr11:14134767-14135092 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 238 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 20, 14 |
| Conread position: | 40-370 |
| Cow position: | chr11:37319309-37319641 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 239 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 14, 39 |
| Conread position: | 40-370 |
| Cow position: | chr11:77161030-77161355 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 23, 47 |
| Conread position: | 55-370 |
| Cow position: | chr11:76600012-76599698 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 226 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 40, 30 |
| Conread position: | 63-370 |
| Cow position: | chr11:50649386-50649074 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 37, 25 |
| Conread position: | 73-297 |
| Cow position: | chr11:3161068-3160847 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 23, 15 |
| Conread position: | 77-380 |
| Cow position: | chr11:38679807-38680107 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 223 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 150, 11 |
| Conread position: | 79-370 |
| Cow position: | chr11:5292696-5292414 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 17, 9 |
| Conread position: | 96-395 |
| Cow position: | chr11:6575246-6575550 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 224 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 20, 53 |
| Conread position: | 100-317 |
| Cow position: | chr11:37334691-37334907 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 27, 42 |
| Conread position: | 127-356 |
| Cow position: | chr11:63275884-63275649 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 100, 13 |
| Conread position: | 133-354 |
| Cow position: | chr11:12167652-12167428 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 85, 15 |
| Conread position: | 138-370 |
| Cow position: | chr11:106211-106450 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 7, 28 |
| Conread position: | 144-279 |
| Cow position: | chr11:58537602-58537469 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 83, 104 |
| Conread position: | 144-353 |
| Cow position: | chr11:70142798-70142579 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 18, 24 |
| Conread position: | 144-356 |
| Cow position: | chr11:896737-896523 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 30, 112 |
| Conread position: | 144-356 |
| Cow position: | chr11:11684859-11685067 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 83, 104 |
| Conread position: | 144-357 |
| Cow position: | chr11:79726619-79726843 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 13, 114 |
| Conread position: | 144-358 |
| Cow position: | chr11:26280385-26280174 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 83, 103 |
| Conread position: | 144-385 |
| Cow position: | chr11:39997451-39997212 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 57, 107 |
| Conread position: | 144-385 |
| Cow position: | chr11:49604099-49603859 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 89, 103 |
| Conread position: | 144-395 |
| Cow position: | chr11:5441255-5440997 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 76, 102 |
| Conread position: | 148-354 |
| Cow position: | chr11:63671475-63671272 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 80, 92 |
| Conread position: | 149-297 |
| Cow position: | chr11:30084393-30084246 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 79, 18 |
| Conread position: | 149-297 |
| Cow position: | chr11:66033808-66033958 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 78, 98 |
| Conread position: | 149-345 |
| Cow position: | chr11:32205920-32205727 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 78, 98 |
| Conread position: | 149-345 |
| Cow position: | chr11:72416606-72416799 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 78, 104 |
| Conread position: | 149-345 |
| Cow position: | chr11:80192522-80192715 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 78, 98 |
| Conread position: | 149-348 |
| Cow position: | chr11:14353441-14353242 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 78, 98 |
| Conread position: | 149-354 |
| Cow position: | chr11:81347772-81347980 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 68, 100 |
| Conread position: | 149-372 |
| Cow position: | chr11:39276972-39276747 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 78, 99 |
| Conread position: | 149-385 |
| Cow position: | chr11:80343845-80343609 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 49, 104 |
| Conread position: | 150-297 |
| Cow position: | chr11:26232658-26232510 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 77, 59 |
| Conread position: | 150-297 |
| Cow position: | chr11:26305387-26305240 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 65, 99 |
| Conread position: | 150-316 |
| Cow position: | chr11:61834024-61834187 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 70, 97 |
| Conread position: | 150-354 |
| Cow position: | chr11:77178326-77178535 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 65, 99 |
| Conread position: | 150-356 |
| Cow position: | chr11:86493214-86493010 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 71, 97 |
| Conread position: | 151-349 |
| Cow position: | chr11:30766913-30766707 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 45, 97 |
| Conread position: | 151-385 |
| Cow position: | chr11:32389640-32389878 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 50, 105 |
| Conread position: | 152-366 |
| Cow position: | chr11:70058272-70058059 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 75, 86 |
| Conread position: | 154-370 |
| Cow position: | chr11:4678042-4678260 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 73, 93 |
| Conread position: | 158-370 |
| Cow position: | chr11:7662344-7662564 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 70, 89 |
| Conread position: | 158-399 |
| Cow position: | chr11:30216353-30216109 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 141, 86 |
| Conread position: | 159-315 |
| Cow position: | chr11:66166240-66166399 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 60, 145 |
| Conread position: | 159-358 |
| Cow position: | chr11:7050927-7051126 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 63, 89 |
| Conread position: | 159-366 |
| Cow position: | chr11:7044643-7044852 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 62, 90 |
| Conread position: | 172-356 |
| Cow position: | chr11:3177513-3177331 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 55, 75 |
| Conread position: | 188-367 |
| Cow position: | chr11:79807684-79807871 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 194-297 |
| Cow position: | chr11:35453469-35453574 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 32, 56 |
| Conread position: | 195-370 |
| Cow position: | chr11:2546067-2546249 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 33, 58 |
| Conread position: | 197-370 |
| Cow position: | chr11:20991103-20990924 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 80, 47 |
Show alignments to all cow chromosomes.