Cow genome map
| Conread name: | rnlu1834b_h15.y1 |
| Conread position: | 8-274 |
| Cow position: | chr3:7830322-7830592 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 31, 136 |
| Conread position: | 12-264 |
| Cow position: | chr3:11030236-11030494 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 14, 139 |
| Conread position: | 25-274 |
| Cow position: | chr3:2306222-2306474 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 13, 123 |
| Conread position: | 25-370 |
| Cow position: | chr3:19696643-19696308 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 245 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 37-367 |
| Cow position: | chr3:1839817-1839480 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 239 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 30, 55 |
| Conread position: | 38-357 |
| Cow position: | chr3:10215803-10215481 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 34, 30 |
| Conread position: | 63-370 |
| Cow position: | chr3:65525933-65526240 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 24, 80 |
| Conread position: | 66-272 |
| Cow position: | chr3:9194892-9195098 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 13, 80 |
| Conread position: | 66-395 |
| Cow position: | chr3:49849930-49850265 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 85 |
| Conread position: | 73-370 |
| Cow position: | chr3:28692095-28692381 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 9, 16 |
| Conread position: | 94-367 |
| Cow position: | chr3:11952589-11952860 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 128, 11 |
| Conread position: | 121-367 |
| Cow position: | chr3:85150059-85149807 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 69, 19 |
| Conread position: | 142-346 |
| Cow position: | chr3:48095267-48095471 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 80, 105 |
| Conread position: | 144-283 |
| Cow position: | chr3:28724764-28724621 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 41, 105 |
| Conread position: | 144-287 |
| Cow position: | chr3:34868327-34868182 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 83, 28 |
| Conread position: | 144-316 |
| Cow position: | chr3:36783434-36783609 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 83, 103 |
| Conread position: | 144-346 |
| Cow position: | chr3:7809896-7809698 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 83, 104 |
| Conread position: | 144-349 |
| Cow position: | chr3:6645525-6645325 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 45, 105 |
| Conread position: | 144-356 |
| Cow position: | chr3:81387242-81387030 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 83, 158 |
| Conread position: | 144-361 |
| Cow position: | chr3:7812704-7812493 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 83, 62 |
| Conread position: | 144-362 |
| Cow position: | chr3:58306933-58306713 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 40, 102 |
| Conread position: | 144-366 |
| Cow position: | chr3:14296294-14296076 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 76, 102 |
| Conread position: | 144-366 |
| Cow position: | chr3:28485494-28485278 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 78, 31 |
| Conread position: | 144-370 |
| Cow position: | chr3:3251540-3251316 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 73, 89 |
| Conread position: | 144-370 |
| Cow position: | chr3:6049582-6049351 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 83, 103 |
| Conread position: | 144-370 |
| Cow position: | chr3:10687961-10688194 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 83, 103 |
| Conread position: | 144-370 |
| Cow position: | chr3:33020549-33020778 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 88, 40 |
| Conread position: | 144-370 |
| Cow position: | chr3:56308283-56308507 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 83, 104 |
| Conread position: | 144-370 |
| Cow position: | chr3:59205546-59205314 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 83, 103 |
| Conread position: | 144-370 |
| Cow position: | chr3:60067833-60067588 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 83, 103 |
| Conread position: | 144-371 |
| Cow position: | chr3:23846752-23846523 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 23, 31 |
| Conread position: | 144-379 |
| Cow position: | chr3:24773223-24772963 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 83, 17 |
| Conread position: | 144-380 |
| Cow position: | chr3:78548834-78549070 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 78, 102 |
| Conread position: | 144-386 |
| Cow position: | chr3:28207766-28207528 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 83, 28 |
| Conread position: | 144-386 |
| Cow position: | chr3:31360188-31360428 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 56, 105 |
| Conread position: | 148-345 |
| Cow position: | chr3:3253752-3253946 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 79, 99 |
| Conread position: | 148-349 |
| Cow position: | chr3:49006244-49006040 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 79, 100 |
| Conread position: | 149-323 |
| Cow position: | chr3:28443777-28443606 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 78, 98 |
| Conread position: | 149-348 |
| Cow position: | chr3:48091116-48091312 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 72, 97 |
| Conread position: | 149-354 |
| Cow position: | chr3:60281541-60281332 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 96, 23 |
| Conread position: | 149-367 |
| Cow position: | chr3:6190273-6190050 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 68, 27 |
| Conread position: | 149-367 |
| Cow position: | chr3:28464658-28464881 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 32, 98 |
| Conread position: | 149-370 |
| Cow position: | chr3:6762325-6762562 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 40, 99 |
| Conread position: | 149-370 |
| Cow position: | chr3:7810272-7810491 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 78, 92 |
| Conread position: | 149-370 |
| Cow position: | chr3:22696760-22696988 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 78, 98 |
| Conread position: | 149-385 |
| Cow position: | chr3:32168383-32168150 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 78, 98 |
| Conread position: | 149-386 |
| Cow position: | chr3:28500938-28500697 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 11, 16 |
| Conread position: | 150-370 |
| Cow position: | chr3:84919277-84919053 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 77, 24 |
| Conread position: | 151-331 |
| Cow position: | chr3:77332917-77333090 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 71, 29 |
| Conread position: | 157-389 |
| Cow position: | chr3:22699112-22698881 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 70, 90 |
| Conread position: | 159-316 |
| Cow position: | chr3:25899182-25899347 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 62, 89 |
| Conread position: | 159-397 |
| Cow position: | chr3:45838909-45838661 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 63, 89 |
| Conread position: | 167-366 |
| Cow position: | chr3:42257321-42257111 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 50, 68 |
| Conread position: | 167-367 |
| Cow position: | chr3:77943888-77943688 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 60, 80 |
| Conread position: | 173-363 |
| Cow position: | chr3:82515717-82515911 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 54, 21 |
| Conread position: | 179-370 |
| Cow position: | chr3:41158770-41158576 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 38, 70 |
Show alignments to all cow chromosomes.