Cow genome map
| Conread name: | rnlu1834b_h15.y1 |
| Conread position: | 25-366 |
| Cow position: | chr5:66106546-66106897 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 28 |
| Conread position: | 25-367 |
| Cow position: | chr5:29537184-29536821 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 13, 119 |
| Conread position: | 25-370 |
| Cow position: | chr5:47619681-47619328 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 260 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 13, 69 |
| Conread position: | 37-344 |
| Cow position: | chr5:19914436-19914756 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 31, 119 |
| Conread position: | 37-370 |
| Cow position: | chr5:48275357-48275015 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 31, 109 |
| Conread position: | 37-370 |
| Cow position: | chr5:64104080-64103740 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 234 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 31, 51 |
| Conread position: | 39-380 |
| Cow position: | chr5:25896488-25896144 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 29, 49 |
| Conread position: | 40-358 |
| Cow position: | chr5:72939730-72939411 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 224 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 47, 15 |
| Conread position: | 41-349 |
| Cow position: | chr5:47840055-47839748 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 218 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 38, 15 |
| Conread position: | 55-370 |
| Cow position: | chr5:64796112-64796426 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 21 |
| Conread position: | 58-395 |
| Cow position: | chr5:18584936-18585280 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 38, 83 |
| Conread position: | 59-243 |
| Cow position: | chr5:18709839-18710022 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 9, 57 |
| Conread position: | 62-366 |
| Cow position: | chr5:2441330-2441024 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 223 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 34, 59 |
| Conread position: | 63-329 |
| Cow position: | chr5:21514907-21514648 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 53, 74 |
| Conread position: | 63-393 |
| Cow position: | chr5:42785669-42785336 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 238 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 33, 81 |
| Conread position: | 73-358 |
| Cow position: | chr5:75573426-75573138 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 6, 15 |
| Conread position: | 77-367 |
| Cow position: | chr5:42183442-42183149 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 219 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 19, 11 |
| Conread position: | 105-370 |
| Cow position: | chr5:63515892-63515633 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 122, 9 |
| Conread position: | 126-372 |
| Cow position: | chr5:21042917-21043161 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 192 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 106, 14 |
| Conread position: | 129-367 |
| Cow position: | chr5:37372078-37372327 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 98, 11 |
| Conread position: | 142-345 |
| Cow position: | chr5:53638093-53638299 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 65, 111 |
| Conread position: | 142-357 |
| Cow position: | chr5:49920334-49920554 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 76, 106 |
| Conread position: | 142-395 |
| Cow position: | chr5:9969517-9969775 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 85, 106 |
| Conread position: | 144-356 |
| Cow position: | chr5:67962418-67962630 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 83, 103 |
| Conread position: | 144-366 |
| Cow position: | chr5:42100024-42099807 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 78, 103 |
| Conread position: | 144-366 |
| Cow position: | chr5:64038913-64039136 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 16, 104 |
| Conread position: | 144-367 |
| Cow position: | chr5:70720730-70720508 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 84, 22 |
| Conread position: | 144-385 |
| Cow position: | chr5:60969261-60969502 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 66, 104 |
| Conread position: | 149-316 |
| Cow position: | chr5:24456387-24456222 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 78, 98 |
| Conread position: | 149-345 |
| Cow position: | chr5:9368673-9368866 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 84, 150 |
| Conread position: | 149-366 |
| Cow position: | chr5:42820235-42820456 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 78, 98 |
| Conread position: | 149-366 |
| Cow position: | chr5:47357836-47358047 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 78, 96 |
| Conread position: | 149-370 |
| Cow position: | chr5:30204586-30204803 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 78, 54 |
| Conread position: | 149-385 |
| Cow position: | chr5:46273343-46273108 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 79, 98 |
| Conread position: | 150-370 |
| Cow position: | chr5:23628484-23628708 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 77, 48 |
| Conread position: | 150-385 |
| Cow position: | chr5:13420983-13421217 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 77, 103 |
| Conread position: | 151-352 |
| Cow position: | chr5:73480304-73480099 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 85, 63 |
| Conread position: | 154-349 |
| Cow position: | chr5:56260474-56260662 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 156-349 |
| Cow position: | chr5:29076000-29076201 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 71, 91 |
| Conread position: | 156-370 |
| Cow position: | chr5:17737099-17737321 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 64, 98 |
| Conread position: | 159-366 |
| Cow position: | chr5:48135707-48135914 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 63, 16 |
| Conread position: | 159-394 |
| Cow position: | chr5:8764338-8764581 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 61, 89 |
| Conread position: | 159-394 |
| Cow position: | chr5:47996450-47996206 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 63, 90 |
| Conread position: | 161-370 |
| Cow position: | chr5:24888638-24888852 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 56, 78 |
| Conread position: | 167-370 |
| Cow position: | chr5:12219217-12219424 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 110, 77 |
| Conread position: | 182-366 |
| Cow position: | chr5:18657605-18657799 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 35, 66 |
| Conread position: | 182-366 |
| Cow position: | chr5:47991630-47991437 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 35, 66 |
Show alignments to all cow chromosomes.