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Cow genome map

           
Conread name:
           
rnmm07c_i8.y1
        

               
Conread position:
               
174-444
               

               
Cow position:
               
chr6:23938357-23938091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
93, 9
               

               
Conread position:
               
178-582
               

               
Cow position:
               
chr6:31535264-31535672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
42, 33
               

               
Conread position:
               
200-580
               

               
Cow position:
               
chr6:14913949-14914348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
46, 11
               

               
Conread position:
               
215-582
               

               
Cow position:
               
chr6:40032451-40032088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
31, 166
               

               
Conread position:
               
215-585
               

               
Cow position:
               
chr6:50577788-50577416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
9, 170
               

               
Conread position:
               
217-568
               

               
Cow position:
               
chr6:35436255-35435904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
52, 26
               

               
Conread position:
               
218-582
               

               
Cow position:
               
chr6:31564086-31564443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
49, 23
               

               
Conread position:
               
221-523
               

               
Cow position:
               
chr6:3351293-3350973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
46, 170
               

               
Conread position:
               
221-580
               

               
Cow position:
               
chr6:58371010-58370650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
46, 14
               

               
Conread position:
               
222-582
               

               
Cow position:
               
chr6:61169012-61168670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
29, 79
               

               
Conread position:
               
224-435
               

               
Cow position:
               
chr6:41657527-41657307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
44, 159
               

               
Conread position:
               
224-583
               

               
Cow position:
               
chr6:23401731-23402095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
6, 163
               

               
Conread position:
               
226-582
               

               
Cow position:
               
chr6:64432193-64431834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
40, 124
               

               
Conread position:
               
227-498
               

               
Cow position:
               
chr6:21293239-21293518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
40, 156
               

               
Conread position:
               
227-569
               

               
Cow position:
               
chr6:52478154-52478506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 24
               

               
Conread position:
               
227-579
               

               
Cow position:
               
chr6:47520315-47519948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
6, 167
               

               
Conread position:
               
227-585
               

               
Cow position:
               
chr6:17414191-17414556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 159
               

               
Conread position:
               
228-546
               

               
Cow position:
               
chr6:67643444-67643760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
40, 49
               

               
Conread position:
               
228-580
               

               
Cow position:
               
chr6:21456421-21456791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
39, 21
               

               
Conread position:
               
229-585
               

               
Cow position:
               
chr6:59602959-59603315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 13
               

               
Conread position:
               
230-526
               

               
Cow position:
               
chr6:2078560-2078869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
37, 160
               

               
Conread position:
               
231-583
               

               
Cow position:
               
chr6:7189875-7190225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
23, 46
               

               
Conread position:
               
232-496
               

               
Cow position:
               
chr6:53546282-53546016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
35, 20
               

               
Conread position:
               
232-505
               

               
Cow position:
               
chr6:56716062-56715791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
35, 64
               

               
Conread position:
               
232-582
               

               
Cow position:
               
chr6:11192226-11192571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 66
               

               
Conread position:
               
232-585
               

               
Cow position:
               
chr6:55475492-55475138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
17, 66
               

               
Conread position:
               
233-580
               

               
Cow position:
               
chr6:56850270-56849909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
34, 136
               

               
Conread position:
               
233-582
               

               
Cow position:
               
chr6:25614838-25615207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 19
               

               
Conread position:
               
235-582
               

               
Cow position:
               
chr6:44194305-44194647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 125
               

               
Conread position:
               
237-555
               

               
Cow position:
               
chr6:67282131-67281819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
48, 146
               

               
Conread position:
               
239-554
               

               
Cow position:
               
chr6:22985615-22985935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
28, 57
               

               
Conread position:
               
241-545
               

               
Cow position:
               
chr6:54490500-54490803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
8, 55
               

               
Conread position:
               
241-582
               

               
Cow position:
               
chr6:37149427-37149083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 143
               

               
Conread position:
               
243-582
               

               
Cow position:
               
chr6:120480-120138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 140
               

               
Conread position:
               
243-582
               

               
Cow position:
               
chr6:29210720-29210394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
24, 53
               

               
Conread position:
               
243-585
               

               
Cow position:
               
chr6:8966331-8965985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 53
               

               
Conread position:
               
243-585
               

               
Cow position:
               
chr6:49421553-49421891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
52, 143
               

               
Conread position:
               
244-555
               

               
Cow position:
               
chr6:16287825-16288130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
38, 28
               

               
Conread position:
               
245-585
               

               
Cow position:
               
chr6:16700495-16700151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
22, 103
               

               
Conread position:
               
246-515
               

               
Cow position:
               
chr6:66570665-66570399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
58, 44
               

               
Conread position:
               
247-566
               

               
Cow position:
               
chr6:37332334-37332018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 25
               

               
Conread position:
               
249-585
               

               
Cow position:
               
chr6:24031600-24031271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
18, 45
               

               
Conread position:
               
249-585
               

               
Cow position:
               
chr6:49398392-49398722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
18, 47
               

               
Conread position:
               
279-582
               

               
Cow position:
               
chr6:21235237-21234939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
6, 99
               

               
Conread position:
               
286-585
               

               
Cow position:
               
chr6:14958153-14958453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
20, 88
               

               
Conread position:
               
292-445
               

               
Cow position:
               
chr6:54349874-54349724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
35, 11
               

               
Conread position:
               
292-458
               

               
Cow position:
               
chr6:58227560-58227389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
292-464
               

               
Cow position:
               
chr6:61569810-61569643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
23, 82
               

               
Conread position:
               
292-583
               

               
Cow position:
               
chr6:6098086-6098391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
147, 81
               

               
Conread position:
               
292-583
               

               
Cow position:
               
chr6:7130698-7130986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
35, 86
               

               
Conread position:
               
292-585
               

               
Cow position:
               
chr6:6401130-6400845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
181, 43
               

               
Conread position:
               
292-585
               

               
Cow position:
               
chr6:37199358-37199643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
187, 58
               

               
Conread position:
               
293-585
               

               
Cow position:
               
chr6:21869470-21869756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 82
               

               
Conread position:
               
294-501
               

               
Cow position:
               
chr6:63066006-63065800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
193, 25
               

               
Conread position:
               
295-582
               

               
Cow position:
               
chr6:17313910-17313629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
186, 70
               

               
Conread position:
               
295-584
               

               
Cow position:
               
chr6:58597327-58597611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 84
               

               
Conread position:
               
296-565
               

               
Cow position:
               
chr6:6067525-6067780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
51, 83
               

               
Conread position:
               
297-577
               

               
Cow position:
               
chr6:50976225-50975958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
32, 86
               

               
Conread position:
               
298-432
               

               
Cow position:
               
chr6:28900500-28900369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
298-520
               

               
Cow position:
               
chr6:67451197-67451415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
182, 79
               

               
Conread position:
               
298-582
               

               
Cow position:
               
chr6:35842831-35842545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
183, 48
               

               
Conread position:
               
298-583
               

               
Cow position:
               
chr6:19996786-19996512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
39, 27
               

               
Conread position:
               
299-581
               

               
Cow position:
               
chr6:38640406-38640127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
179, 78
               

               
Conread position:
               
299-583
               

               
Cow position:
               
chr6:53932675-53932953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
114, 47
               

               
Conread position:
               
299-585
               

               
Cow position:
               
chr6:8125499-8125220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
39, 48
               

               
Conread position:
               
299-585
               

               
Cow position:
               
chr6:19264326-19264604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
302-527
               

               
Cow position:
               
chr6:32809451-32809226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
108, 74
               

               
Conread position:
               
302-583
               

               
Cow position:
               
chr6:48112365-48112093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
302-584
               

               
Cow position:
               
chr6:5302249-5302516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
16, 76
               

               
Conread position:
               
302-585
               

               
Cow position:
               
chr6:10105809-10106100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 75
               

               
Conread position:
               
303-527
               

               
Cow position:
               
chr6:50504625-50504402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
172, 78
               

               
Conread position:
               
303-529
               

               
Cow position:
               
chr6:19131599-19131378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
175, 75
               

               
Conread position:
               
303-568
               

               
Cow position:
               
chr6:61269481-61269219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
303-572
               

               
Cow position:
               
chr6:13687646-13687908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 16
               

               
Conread position:
               
303-582
               

               
Cow position:
               
chr6:61631439-61631714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
25, 45
               

               
Conread position:
               
303-583
               

               
Cow position:
               
chr6:2547425-2547140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 75
               

               
Conread position:
               
303-583
               

               
Cow position:
               
chr6:10176133-10176408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
247, 74
               

               
Conread position:
               
303-585
               

               
Cow position:
               
chr6:23696169-23695886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 75
               

               
Conread position:
               
303-585
               

               
Cow position:
               
chr6:26915498-26915221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 79
               

               
Conread position:
               
304-500
               

               
Cow position:
               
chr6:26155316-26155128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
304-582
               

               
Cow position:
               
chr6:46859998-46860269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 38
               

               
Conread position:
               
304-583
               

               
Cow position:
               
chr6:36202990-36202722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 73
               

               
Conread position:
               
304-585
               

               
Cow position:
               
chr6:65871204-65870920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 69
               

               
Conread position:
               
305-460
               

               
Cow position:
               
chr6:1866897-1866747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
305-501
               

               
Cow position:
               
chr6:48097432-48097626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
118, 68
               

               
Conread position:
               
305-539
               

               
Cow position:
               
chr6:59770390-59770165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
305-541
               

               
Cow position:
               
chr6:60468406-60468173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
48, 35
               

               
Conread position:
               
305-573
               

               
Cow position:
               
chr6:9736494-9736740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
248, 41
               

               
Conread position:
               
305-582
               

               
Cow position:
               
chr6:4559144-4559410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
251, 57
               

               
Conread position:
               
305-583
               

               
Cow position:
               
chr6:54867684-54867407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
184, 72
               

               
Conread position:
               
305-585
               

               
Cow position:
               
chr6:8209439-8209699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
22, 11
               

               
Conread position:
               
305-585
               

               
Cow position:
               
chr6:24468229-24468501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
240, 70
               

               
Conread position:
               
305-585
               

               
Cow position:
               
chr6:29485251-29484982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 73
               

               
Conread position:
               
305-585
               

               
Cow position:
               
chr6:47355989-47355716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
38, 42
               

               
Conread position:
               
305-585
               

               
Cow position:
               
chr6:51581087-51581361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 43
               

               
Conread position:
               
306-522
               

               
Cow position:
               
chr6:1422652-1422440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
170, 71
               

               
Conread position:
               
307-459
               

               
Cow position:
               
chr6:30024050-30023901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
307-465
               

               
Cow position:
               
chr6:18422825-18422980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
20, 75
               

               
Conread position:
               
307-581
               

               
Cow position:
               
chr6:44078679-44078414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
307-582
               

               
Cow position:
               
chr6:53460402-53460677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 70
               

               
Conread position:
               
307-585
               

               
Cow position:
               
chr6:8637447-8637167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
19, 65
               

               
Conread position:
               
308-459
               

               
Cow position:
               
chr6:12623677-12623531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
19, 30
               

               
Conread position:
               
308-534
               

               
Cow position:
               
chr6:60516989-60516769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
157, 68
               

               
Conread position:
               
309-459
               

               
Cow position:
               
chr6:1871035-1871182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
309-460
               

               
Cow position:
               
chr6:54471768-54471916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
7, 66
               

               
Conread position:
               
309-581
               

               
Cow position:
               
chr6:59069457-59069728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
68, 157
               

               
Conread position:
               
309-582
               

               
Cow position:
               
chr6:57546066-57546319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
309-585
               

               
Cow position:
               
chr6:47575069-47574797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
226, 64
               

               
Conread position:
               
311-498
               

               
Cow position:
               
chr6:53090169-53089986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
311-573
               

               
Cow position:
               
chr6:63720362-63720099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
15, 67
               

               
Conread position:
               
312-582
               

               
Cow position:
               
chr6:11169863-11169600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
14, 67
               

               
Conread position:
               
312-585
               

               
Cow position:
               
chr6:12551432-12551162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
15, 68
               

               
Conread position:
               
312-585
               

               
Cow position:
               
chr6:54990841-54991108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 66
               

               
Conread position:
               
313-520
               

               
Cow position:
               
chr6:55535593-55535792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
313-556
               

               
Cow position:
               
chr6:23465874-23466108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
13, 65
               

               
Conread position:
               
313-582
               

               
Cow position:
               
chr6:26728375-26728630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
215, 12
               

               
Conread position:
               
313-582
               

               
Cow position:
               
chr6:58590433-58590173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
5, 65
               

               
Conread position:
               
314-512
               

               
Cow position:
               
chr6:34119196-34119390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
169, 63
               

               
Conread position:
               
314-563
               

               
Cow position:
               
chr6:37463181-37462936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
12, 64
               

               
Conread position:
               
314-580
               

               
Cow position:
               
chr6:35993740-35993478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
164, 5
               

               
Conread position:
               
314-583
               

               
Cow position:
               
chr6:50984379-50984119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
243, 33
               

               
Conread position:
               
315-459
               

               
Cow position:
               
chr6:1002106-1002247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
315-459
               

               
Cow position:
               
chr6:43651909-43651768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
315-470
               

               
Cow position:
               
chr6:21470272-21470424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
315-472
               

               
Cow position:
               
chr6:58725525-58725374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
315-480
               

               
Cow position:
               
chr6:58459877-58459717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
315-509
               

               
Cow position:
               
chr6:19259183-19259377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
12, 64
               

               
Conread position:
               
315-527
               

               
Cow position:
               
chr6:60144041-60144249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
136, 60
               

               
Conread position:
               
315-541
               

               
Cow position:
               
chr6:18117893-18118116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
165, 62
               

               
Conread position:
               
315-544
               

               
Cow position:
               
chr6:37395243-37395475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
49, 63
               

               
Conread position:
               
315-545
               

               
Cow position:
               
chr6:9302563-9302784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
220, 62
               

               
Conread position:
               
315-553
               

               
Cow position:
               
chr6:693987-694223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
44, 163
               

               
Conread position:
               
315-555
               

               
Cow position:
               
chr6:4468920-4468690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
166, 23
               

               
Conread position:
               
315-555
               

               
Cow position:
               
chr6:38441329-38441098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
25, 35
               

               
Conread position:
               
315-561
               

               
Cow position:
               
chr6:13565243-13565000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
22, 32
               

               
Conread position:
               
315-567
               

               
Cow position:
               
chr6:35990077-35990323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
91, 63
               

               
Conread position:
               
315-570
               

               
Cow position:
               
chr6:39093906-39093643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
121, 23
               

               
Conread position:
               
315-571
               

               
Cow position:
               
chr6:17794607-17794850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
232, 61
               

               
Conread position:
               
315-576
               

               
Cow position:
               
chr6:15300678-15300918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
232, 16
               

               
Conread position:
               
315-577
               

               
Cow position:
               
chr6:16316473-16316206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
22, 32
               

               
Conread position:
               
315-577
               

               
Cow position:
               
chr6:61524048-61524301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
161, 62
               

               
Conread position:
               
315-579
               

               
Cow position:
               
chr6:15242993-15242734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
108, 60
               

               
Conread position:
               
315-579
               

               
Cow position:
               
chr6:45690453-45690691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
315-579
               

               
Cow position:
               
chr6:47799450-47799189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
231, 62
               

               
Conread position:
               
315-580
               

               
Cow position:
               
chr6:36196366-36196111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
11, 28
               

               
Conread position:
               
315-580
               

               
Cow position:
               
chr6:60273852-60274109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 59
               

               
Conread position:
               
315-581
               

               
Cow position:
               
chr6:4691819-4692084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
23, 33
               

               
Conread position:
               
315-581
               

               
Cow position:
               
chr6:32867062-32867310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
90, 58
               

               
Conread position:
               
315-581
               

               
Cow position:
               
chr6:46465978-46465719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
315-581
               

               
Cow position:
               
chr6:54132969-54132713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
156, 26
               

               
Conread position:
               
315-582
               

               
Cow position:
               
chr6:582116-582376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
315-582
               

               
Cow position:
               
chr6:11246923-11246658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
164, 25
               

               
Conread position:
               
315-582
               

               
Cow position:
               
chr6:15447041-15447309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
161, 62
               

               
Conread position:
               
315-582
               

               
Cow position:
               
chr6:46282847-46283105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 62
               

               
Conread position:
               
315-582
               

               
Cow position:
               
chr6:66131461-66131198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
180, 16
               

               
Conread position:
               
315-583
               

               
Cow position:
               
chr6:528126-528379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
11, 63
               

               
Conread position:
               
315-583
               

               
Cow position:
               
chr6:34195992-34196256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
47, 63
               

               
Conread position:
               
315-583
               

               
Cow position:
               
chr6:35181100-35181364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
161, 60
               

               
Conread position:
               
315-583
               

               
Cow position:
               
chr6:38771437-38771180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
167, 56
               

               
Conread position:
               
315-583
               

               
Cow position:
               
chr6:47339199-47339458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
159, 62
               

               
Conread position:
               
315-585
               

               
Cow position:
               
chr6:15243412-15243148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
315-585
               

               
Cow position:
               
chr6:15305727-15305473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
14, 36
               

               
Conread position:
               
315-585
               

               
Cow position:
               
chr6:38207335-38207599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 16
               

               
Conread position:
               
315-585
               

               
Cow position:
               
chr6:38853500-38853762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
12, 34
               

               
Conread position:
               
315-585
               

               
Cow position:
               
chr6:53652197-53651935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
315-585
               

               
Cow position:
               
chr6:57571636-57571369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 63
               

               
Conread position:
               
316-501
               

               
Cow position:
               
chr6:62056770-62056588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
162, 62
               

               
Conread position:
               
316-572
               

               
Cow position:
               
chr6:63047748-63047482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
134, 62
               

               
Conread position:
               
316-573
               

               
Cow position:
               
chr6:66375177-66375426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
316-576
               

               
Cow position:
               
chr6:53841350-53841598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
316-577
               

               
Cow position:
               
chr6:52901394-52901134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
112, 60
               

               
Conread position:
               
316-580
               

               
Cow position:
               
chr6:5095386-5095657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
20, 31
               

               
Conread position:
               
316-582
               

               
Cow position:
               
chr6:17997164-17997420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
239, 60
               

               
Conread position:
               
316-582
               

               
Cow position:
               
chr6:21514452-21514724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
22, 31
               

               
Conread position:
               
316-582
               

               
Cow position:
               
chr6:42565843-42565584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
162, 30
               

               
Conread position:
               
316-585
               

               
Cow position:
               
chr6:28976884-28977143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 61
               

               
Conread position:
               
316-585
               

               
Cow position:
               
chr6:39358185-39358451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
103, 61
               

               
Conread position:
               
317-516
               

               
Cow position:
               
chr6:32516955-32517139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
317-529
               

               
Cow position:
               
chr6:68816321-68816114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
163, 57
               

               
Conread position:
               
317-577
               

               
Cow position:
               
chr6:27239851-27240106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
317-579
               

               
Cow position:
               
chr6:46571261-46571015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
11, 54
               

               
Conread position:
               
317-582
               

               
Cow position:
               
chr6:38218821-38218567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
26, 39
               

               
Conread position:
               
317-582
               

               
Cow position:
               
chr6:43134784-43135049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
240, 56
               

               
Conread position:
               
317-582
               

               
Cow position:
               
chr6:67214905-67214639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
9, 61
               

               
Conread position:
               
317-585
               

               
Cow position:
               
chr6:13040595-13040349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
9, 46
               

               
Conread position:
               
317-585
               

               
Cow position:
               
chr6:63251769-63252031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
232, 36
               

               
Conread position:
               
318-501
               

               
Cow position:
               
chr6:68685707-68685530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
318-581
               

               
Cow position:
               
chr6:4383632-4383382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
318-582
               

               
Cow position:
               
chr6:60740168-60739910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
237, 59
               

               
Conread position:
               
318-582
               

               
Cow position:
               
chr6:67951103-67950848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
161, 59
               

               
Conread position:
               
318-585
               

               
Cow position:
               
chr6:445477-445207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
162, 59
               

               
Conread position:
               
319-459
               

               
Cow position:
               
chr6:1941679-1941816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
319-501
               

               
Cow position:
               
chr6:51463481-51463657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
140, 41
               

               
Conread position:
               
319-545
               

               
Cow position:
               
chr6:17068495-17068717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
319-569
               

               
Cow position:
               
chr6:143222-143460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
319-579
               

               
Cow position:
               
chr6:32287788-32287536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 50
               

               
Conread position:
               
319-580
               

               
Cow position:
               
chr6:7128251-7128505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
160, 21
               

               
Conread position:
               
319-582
               

               
Cow position:
               
chr6:9008459-9008716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
319-582
               

               
Cow position:
               
chr6:45064864-45065119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
319-582
               

               
Cow position:
               
chr6:55282140-55282391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
52, 59
               

               
Conread position:
               
319-582
               

               
Cow position:
               
chr6:66874501-66874246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
160, 9
               

               
Conread position:
               
319-585
               

               
Cow position:
               
chr6:24004689-24004435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
320-568
               

               
Cow position:
               
chr6:17245466-17245697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
94, 40
               

               
Conread position:
               
320-583
               

               
Cow position:
               
chr6:18988361-18988107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
27, 58
               

               
Conread position:
               
321-581
               

               
Cow position:
               
chr6:60667561-60667314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
235, 43
               

               
Conread position:
               
321-582
               

               
Cow position:
               
chr6:16423852-16423593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 52
               

               
Conread position:
               
322-577
               

               
Cow position:
               
chr6:27888501-27888249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
16, 28
               

               
Conread position:
               
322-582
               

               
Cow position:
               
chr6:8787887-8788143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
226, 55
               

               
Conread position:
               
322-582
               

               
Cow position:
               
chr6:49002589-49002839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
5, 59
               

               
Conread position:
               
322-583
               

               
Cow position:
               
chr6:36470412-36470674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
137, 55
               

               
Conread position:
               
323-580
               

               
Cow position:
               
chr6:1499789-1499537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
129, 32
               

               
Conread position:
               
323-582
               

               
Cow position:
               
chr6:31526195-31525947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
115, 50
               

               
Conread position:
               
323-582
               

               
Cow position:
               
chr6:66531673-66531926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
324-437
               

               
Cow position:
               
chr6:21083393-21083503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
324-494
               

               
Cow position:
               
chr6:4702676-4702842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
324-510
               

               
Cow position:
               
chr6:60266035-60266215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
156, 53
               

               
Conread position:
               
324-524
               

               
Cow position:
               
chr6:31078721-31078919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
91, 17
               

               
Conread position:
               
324-561
               

               
Cow position:
               
chr6:20929366-20929600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
151, 34
               

               
Conread position:
               
324-563
               

               
Cow position:
               
chr6:51969224-51968981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
155, 51
               

               
Conread position:
               
324-577
               

               
Cow position:
               
chr6:37634943-37634684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
19, 13
               

               
Conread position:
               
324-581
               

               
Cow position:
               
chr6:7119471-7119714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
152, 53
               

               
Conread position:
               
324-582
               

               
Cow position:
               
chr6:5609299-5609545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
324-582
               

               
Cow position:
               
chr6:17090746-17090494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
155, 22
               

               
Conread position:
               
324-583
               

               
Cow position:
               
chr6:21231673-21231425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
8, 54
               

               
Conread position:
               
324-583
               

               
Cow position:
               
chr6:28999792-29000031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
75, 16
               

               
Conread position:
               
324-585
               

               
Cow position:
               
chr6:47640285-47640541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 7
               

               
Conread position:
               
325-522
               

               
Cow position:
               
chr6:32853334-32853141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
138, 52
               

               
Conread position:
               
325-568
               

               
Cow position:
               
chr6:6965253-6965482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
325-582
               

               
Cow position:
               
chr6:60350145-60350400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 52
               

               
Conread position:
               
326-459
               

               
Cow position:
               
chr6:57328248-57328377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
327-580
               

               
Cow position:
               
chr6:17548829-17549084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
136, 55
               

               
Conread position:
               
327-582
               

               
Cow position:
               
chr6:12338144-12337879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
327-585
               

               
Cow position:
               
chr6:32122053-32121803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
19, 51
               

               
Conread position:
               
327-585
               

               
Cow position:
               
chr6:38641637-38641386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
151, 50
               

               
Conread position:
               
327-585
               

               
Cow position:
               
chr6:56843299-56843048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
122, 50
               

               
Conread position:
               
328-582
               

               
Cow position:
               
chr6:4864403-4864653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
328-582
               

               
Cow position:
               
chr6:40713354-40713606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
10, 135
               

               
Conread position:
               
328-585
               

               
Cow position:
               
chr6:35613273-35613522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
68, 53
               

               
Conread position:
               
329-585
               

               
Cow position:
               
chr6:20097816-20098072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 48
               

               
Conread position:
               
330-582
               

               
Cow position:
               
chr6:59718938-59718691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
133, 43
               

               
Conread position:
               
331-575
               

               
Cow position:
               
chr6:19292942-19292700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
117, 46
               

               
Conread position:
               
333-580
               

               
Cow position:
               
chr6:38614951-38614716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
146, 44
               

               
Conread position:
               
345-544
               

               
Cow position:
               
chr6:15022420-15022615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
346-581
               

               
Cow position:
               
chr6:36652548-36652315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
115, 31
               

               
Conread position:
               
346-585
               

               
Cow position:
               
chr6:23247840-23248067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
134, 31
               

               
Conread position:
               
346-585
               

               
Cow position:
               
chr6:61608638-61608403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
348-581
               

               
Cow position:
               
chr6:130039-130265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
131, 30
               

               
Conread position:
               
348-582
               

               
Cow position:
               
chr6:899169-899395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
351-582
               

               
Cow position:
               
chr6:55209678-55209451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
87, 26
               

               
Conread position:
               
351-585
               

               
Cow position:
               
chr6:31635563-31635797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
30, 42
               

               
Conread position:
               
352-577
               

               
Cow position:
               
chr6:28318517-28318304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
355-506
               

               
Cow position:
               
chr6:12197297-12197148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
110, 22
               

               
Conread position:
               
355-583
               

               
Cow position:
               
chr6:57164546-57164320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
191, 22
               

               
Conread position:
               
358-579
               

               
Cow position:
               
chr6:52248016-52248233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
120, 25
               

               
Conread position:
               
366-543
               

               
Cow position:
               
chr6:23353656-23353487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
119, 11
               

               
Conread position:
               
366-582
               

               
Cow position:
               
chr6:16266830-16266614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
186, 11
               

               
Conread position:
               
373-582
               

               
Cow position:
               
chr6:59109047-59108836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
103, 87
               

               
Conread position:
               
375-585
               

               
Cow position:
               
chr6:45596432-45596646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
101, 86
               

               
Conread position:
               
376-544
               

               
Cow position:
               
chr6:7170249-7170414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
29, 90
               

               
Conread position:
               
376-565
               

               
Cow position:
               
chr6:48170037-48169857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
170, 85
               

               
Conread position:
               
376-580
               

               
Cow position:
               
chr6:46292249-46292447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
171, 52
               

               
Conread position:
               
376-582
               

               
Cow position:
               
chr6:25008818-25008609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
24, 121
               

               
Conread position:
               
376-585
               

               
Cow position:
               
chr6:29240038-29239831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
35, 16
               

               
Conread position:
               
377-546
               

               
Cow position:
               
chr6:36493443-36493618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
46, 15
               

               
Conread position:
               
380-579
               

               
Cow position:
               
chr6:62924901-62925099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
41, 83
               

               
Conread position:
               
382-581
               

               
Cow position:
               
chr6:44099179-44098980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
99, 23
               

               
Conread position:
               
383-541
               

               
Cow position:
               
chr6:67615338-67615495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
383-569
               

               
Cow position:
               
chr6:57405033-57405215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
383-582
               

               
Cow position:
               
chr6:54368812-54369005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
110, 78
               

               
Conread position:
               
383-585
               

               
Cow position:
               
chr6:12542838-12543041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
383-585
               

               
Cow position:
               
chr6:24962237-24962041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
36, 86
               

               
Conread position:
               
384-541
               

               
Cow position:
               
chr6:1944804-1944647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
93, 34
               

               
Conread position:
               
384-582
               

               
Cow position:
               
chr6:12829134-12829328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
91, 82
               

               
Conread position:
               
385-582
               

               
Cow position:
               
chr6:607353-607161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
23, 92
               

               
Conread position:
               
387-582
               

               
Cow position:
               
chr6:37376426-37376622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
394-583
               

               
Cow position:
               
chr6:44984414-44984223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
32, 71
               

               
Conread position:
               
395-581
               

               
Cow position:
               
chr6:49410617-49410795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
395-585
               

               
Cow position:
               
chr6:21542403-21542212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
77, 68
               

               
Conread position:
               
396-585
               

               
Cow position:
               
chr6:416187-415990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
401-582
               

               
Cow position:
               
chr6:19351083-19351259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
23, 34
               

               
Conread position:
               
402-579
               

               
Cow position:
               
chr6:18961442-18961618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
406-580
               

               
Cow position:
               
chr6:38234028-38233855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
76, 55
               

               
Conread position:
               
411-576
               

               
Cow position:
               
chr6:16411253-16411091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
68, 23
               

               
Conread position:
               
412-585
               

               
Cow position:
               
chr6:6460605-6460435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
68, 55
               

               
Conread position:
               
418-581
               

               
Cow position:
               
chr6:47540588-47540427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
139, 17
               

               
Conread position:
               
419-582
               

               
Cow position:
               
chr6:34031717-34031558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
423-579
               

               
Cow position:
               
chr6:25773333-25773485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
55, 102
               

               
Conread position:
               
423-582
               

               
Cow position:
               
chr6:61137427-61137270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
426-582
               

               
Cow position:
               
chr6:9219321-9219168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
426-582
               

               
Cow position:
               
chr6:20230777-20230936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
50, 36
               

               
Conread position:
               
427-585
               

               
Cow position:
               
chr6:48344381-48344224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
24, 40
               

               
Conread position:
               
475-585
               

               
Cow position:
               
chr6:15922997-15923107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
475-585
               

               
Cow position:
               
chr6:32210626-32210736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
479-585
               

               
Cow position:
               
chr6:2013017-2012911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.