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Cow genome map

           
Conread name:
           
rnmm21c_n23.y1
        

               
Conread position:
               
91-315
               

               
Cow position:
               
chr1:31801661-31801885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
17, 109
               

               
Conread position:
               
94-329
               

               
Cow position:
               
chr1:74919721-74919958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
37, 25
               

               
Conread position:
               
94-365
               

               
Cow position:
               
chr1:71228350-71228078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
14, 54
               

               
Conread position:
               
97-372
               

               
Cow position:
               
chr1:22637182-22637451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
15, 37
               

               
Conread position:
               
101-324
               

               
Cow position:
               
chr1:100513149-100512919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
24, 32
               

               
Conread position:
               
103-341
               

               
Cow position:
               
chr1:98556879-98557110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
68, 26
               

               
Conread position:
               
105-371
               

               
Cow position:
               
chr1:69265068-69264790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
61, 25
               

               
Conread position:
               
107-365
               

               
Cow position:
               
chr1:83973007-83972749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
21, 171
               

               
Conread position:
               
108-334
               

               
Cow position:
               
chr1:46004512-46004297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
111-316
               

               
Cow position:
               
chr1:43296475-43296685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
43, 171
               

               
Conread position:
               
111-372
               

               
Cow position:
               
chr1:22943795-22944045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
68, 16
               

               
Conread position:
               
112-347
               

               
Cow position:
               
chr1:5283992-5284224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
30, 15
               

               
Conread position:
               
112-371
               

               
Cow position:
               
chr1:75745094-75744842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
65, 33
               

               
Conread position:
               
113-262
               

               
Cow position:
               
chr1:14067210-14067360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
60, 13
               

               
Conread position:
               
113-306
               

               
Cow position:
               
chr1:10523932-10523744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
37, 10
               

               
Conread position:
               
113-335
               

               
Cow position:
               
chr1:95704041-95703820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
27, 125
               

               
Conread position:
               
113-356
               

               
Cow position:
               
chr1:92792286-92792046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
63, 154
               

               
Conread position:
               
113-369
               

               
Cow position:
               
chr1:63434565-63434825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
66, 14
               

               
Conread position:
               
114-333
               

               
Cow position:
               
chr1:102424031-102423810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
20, 163
               

               
Conread position:
               
114-368
               

               
Cow position:
               
chr1:21093351-21093099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
19, 39
               

               
Conread position:
               
114-372
               

               
Cow position:
               
chr1:43855520-43855283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
62, 15
               

               
Conread position:
               
114-372
               

               
Cow position:
               
chr1:63992101-63992357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
18, 32
               

               
Conread position:
               
114-372
               

               
Cow position:
               
chr1:95835562-95835820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 163
               

               
Conread position:
               
115-352
               

               
Cow position:
               
chr1:5010604-5010844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
64, 18
               

               
Conread position:
               
116-270
               

               
Cow position:
               
chr1:63190712-63190555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
116-271
               

               
Cow position:
               
chr1:716358-716512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
61, 7
               

               
Conread position:
               
116-342
               

               
Cow position:
               
chr1:70483104-70483326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
21, 14
               

               
Conread position:
               
116-360
               

               
Cow position:
               
chr1:74929478-74929727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
63, 29
               

               
Conread position:
               
116-364
               

               
Cow position:
               
chr1:97144241-97144478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
63, 30
               

               
Conread position:
               
116-369
               

               
Cow position:
               
chr1:78067819-78068088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
11, 33
               

               
Conread position:
               
116-373
               

               
Cow position:
               
chr1:58347192-58347450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
60, 11
               

               
Conread position:
               
117-314
               

               
Cow position:
               
chr1:79001615-79001812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
19, 29
               

               
Conread position:
               
117-327
               

               
Cow position:
               
chr1:82917251-82917450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
17, 59
               

               
Conread position:
               
117-338
               

               
Cow position:
               
chr1:83222219-83222007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
23, 162
               

               
Conread position:
               
117-369
               

               
Cow position:
               
chr1:852404-852151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 161
               

               
Conread position:
               
117-371
               

               
Cow position:
               
chr1:10880849-10881103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
60, 109
               

               
Conread position:
               
117-372
               

               
Cow position:
               
chr1:63595820-63596076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
23, 165
               

               
Conread position:
               
117-372
               

               
Cow position:
               
chr1:74751398-74751656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
61, 128
               

               
Conread position:
               
117-372
               

               
Cow position:
               
chr1:86110518-86110758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
60, 22
               

               
Conread position:
               
117-372
               

               
Cow position:
               
chr1:95828906-95829140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
59, 28
               

               
Conread position:
               
118-329
               

               
Cow position:
               
chr1:53403010-53402802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
16, 59
               

               
Conread position:
               
118-371
               

               
Cow position:
               
chr1:16060780-16061024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
61, 27
               

               
Conread position:
               
119-290
               

               
Cow position:
               
chr1:43340404-43340578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
20, 109
               

               
Conread position:
               
119-330
               

               
Cow position:
               
chr1:102797772-102797978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
36, 26
               

               
Conread position:
               
119-337
               

               
Cow position:
               
chr1:102500885-102501103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
60, 139
               

               
Conread position:
               
119-343
               

               
Cow position:
               
chr1:20537430-20537212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
59, 101
               

               
Conread position:
               
119-343
               

               
Cow position:
               
chr1:37145514-37145293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
119-365
               

               
Cow position:
               
chr1:46030136-46030376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
57, 132
               

               
Conread position:
               
119-368
               

               
Cow position:
               
chr1:57053431-57053179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
60, 26
               

               
Conread position:
               
119-368
               

               
Cow position:
               
chr1:78092270-78092019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
17, 158
               

               
Conread position:
               
119-372
               

               
Cow position:
               
chr1:54156508-54156756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 20
               

               
Conread position:
               
119-372
               

               
Cow position:
               
chr1:56477812-56477571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
59, 13
               

               
Conread position:
               
119-372
               

               
Cow position:
               
chr1:67529289-67529034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
16, 92
               

               
Conread position:
               
119-372
               

               
Cow position:
               
chr1:81228108-81228355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
54, 100
               

               
Conread position:
               
119-373
               

               
Cow position:
               
chr1:648557-648302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
9, 18
               

               
Conread position:
               
119-373
               

               
Cow position:
               
chr1:47790438-47790685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
13, 94
               

               
Conread position:
               
119-373
               

               
Cow position:
               
chr1:49334163-49334415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
21, 105
               

               
Conread position:
               
119-373
               

               
Cow position:
               
chr1:67919355-67919113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
20, 10
               

               
Conread position:
               
120-361
               

               
Cow position:
               
chr1:24132839-24133071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
59, 15
               

               
Conread position:
               
120-372
               

               
Cow position:
               
chr1:72105626-72105390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
56, 10
               

               
Conread position:
               
121-364
               

               
Cow position:
               
chr1:11488934-11489173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
56, 12
               

               
Conread position:
               
121-365
               

               
Cow position:
               
chr1:4391044-4391294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
55, 11
               

               
Conread position:
               
122-255
               

               
Cow position:
               
chr1:36089990-36090126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
52, 18
               

               
Conread position:
               
122-356
               

               
Cow position:
               
chr1:79844704-79844459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
57, 170
               

               
Conread position:
               
122-372
               

               
Cow position:
               
chr1:101177752-101177493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
21, 164
               

               
Conread position:
               
122-373
               

               
Cow position:
               
chr1:46031187-46030938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
18, 153
               

               
Conread position:
               
123-271
               

               
Cow position:
               
chr1:709682-709830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
53, 17
               

               
Conread position:
               
123-272
               

               
Cow position:
               
chr1:67160063-67160216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
123-275
               

               
Cow position:
               
chr1:64706129-64705970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
123-275
               

               
Cow position:
               
chr1:73374875-73375031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
56, 7
               

               
Conread position:
               
123-293
               

               
Cow position:
               
chr1:73397847-73398017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
123-329
               

               
Cow position:
               
chr1:79178855-79178649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
56, 154
               

               
Conread position:
               
123-330
               

               
Cow position:
               
chr1:92188183-92187977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
50, 94
               

               
Conread position:
               
123-334
               

               
Cow position:
               
chr1:1380225-1380013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
46, 155
               

               
Conread position:
               
123-339
               

               
Cow position:
               
chr1:1347410-1347624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
47, 77
               

               
Conread position:
               
123-343
               

               
Cow position:
               
chr1:71664672-71664887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
53, 15
               

               
Conread position:
               
123-347
               

               
Cow position:
               
chr1:89437504-89437711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
56, 96
               

               
Conread position:
               
123-350
               

               
Cow position:
               
chr1:73545683-73545913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
19, 155
               

               
Conread position:
               
123-353
               

               
Cow position:
               
chr1:6399004-6398771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
8, 156
               

               
Conread position:
               
123-354
               

               
Cow position:
               
chr1:35671758-35671538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
56, 7
               

               
Conread position:
               
123-362
               

               
Cow position:
               
chr1:13157415-13157173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
51, 10
               

               
Conread position:
               
123-365
               

               
Cow position:
               
chr1:73719694-73719446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
56, 22
               

               
Conread position:
               
123-368
               

               
Cow position:
               
chr1:18936612-18936851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
17, 82
               

               
Conread position:
               
123-371
               

               
Cow position:
               
chr1:72034704-72034944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 72
               

               
Conread position:
               
123-371
               

               
Cow position:
               
chr1:97611448-97611680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
7, 47
               

               
Conread position:
               
123-372
               

               
Cow position:
               
chr1:55428728-55428978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 155
               

               
Conread position:
               
123-372
               

               
Cow position:
               
chr1:58653214-58653463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
45, 153
               

               
Conread position:
               
123-372
               

               
Cow position:
               
chr1:70428963-70428715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
13, 151
               

               
Conread position:
               
123-372
               

               
Cow position:
               
chr1:101835041-101834798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
18, 32
               

               
Conread position:
               
123-373
               

               
Cow position:
               
chr1:22824133-22823883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 156
               

               
Conread position:
               
123-373
               

               
Cow position:
               
chr1:28563338-28563589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
52, 17
               

               
Conread position:
               
123-373
               

               
Cow position:
               
chr1:71665710-71665954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
56, 136
               

               
Conread position:
               
123-377
               

               
Cow position:
               
chr1:43148312-43148573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
20, 30
               

               
Conread position:
               
124-338
               

               
Cow position:
               
chr1:15875882-15875672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
53, 102
               

               
Conread position:
               
124-368
               

               
Cow position:
               
chr1:37917958-37918207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
54, 23
               

               
Conread position:
               
124-369
               

               
Cow position:
               
chr1:46245513-46245768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
50, 150
               

               
Conread position:
               
124-373
               

               
Cow position:
               
chr1:22730956-22730711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
49, 103
               

               
Conread position:
               
126-298
               

               
Cow position:
               
chr1:54645645-54645479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
9, 43
               

               
Conread position:
               
126-342
               

               
Cow position:
               
chr1:60603347-60603569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
18, 157
               

               
Conread position:
               
126-372
               

               
Cow position:
               
chr1:42868729-42868957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
127-372
               

               
Cow position:
               
chr1:33206654-33206898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
52, 157
               

               
Conread position:
               
127-373
               

               
Cow position:
               
chr1:42541812-42541576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
21, 91
               

               
Conread position:
               
128-372
               

               
Cow position:
               
chr1:68672385-68672618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
53, 25
               

               
Conread position:
               
128-372
               

               
Cow position:
               
chr1:90975856-90976110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
19, 134
               

               
Conread position:
               
128-377
               

               
Cow position:
               
chr1:29626695-29626938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
51, 5
               

               
Conread position:
               
129-275
               

               
Cow position:
               
chr1:45290066-45289922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
44, 123
               

               
Conread position:
               
129-329
               

               
Cow position:
               
chr1:48301233-48301430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
46, 97
               

               
Conread position:
               
129-371
               

               
Cow position:
               
chr1:47658566-47658325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
50, 148
               

               
Conread position:
               
129-372
               

               
Cow position:
               
chr1:51417983-51417752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
30, 73
               

               
Conread position:
               
130-247
               

               
Cow position:
               
chr1:68664143-68664023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
48, 65
               

               
Conread position:
               
130-254
               

               
Cow position:
               
chr1:101867866-101867738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
130-273
               

               
Cow position:
               
chr1:7962877-7962735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
29, 46
               

               
Conread position:
               
130-275
               

               
Cow position:
               
chr1:65160348-65160199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
11, 142
               

               
Conread position:
               
130-293
               

               
Cow position:
               
chr1:47190776-47190943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
49, 35
               

               
Conread position:
               
130-296
               

               
Cow position:
               
chr1:78801760-78801925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
49, 22
               

               
Conread position:
               
130-304
               

               
Cow position:
               
chr1:31807075-31806907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
130-308
               

               
Cow position:
               
chr1:41953782-41953960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
46, 146
               

               
Conread position:
               
130-309
               

               
Cow position:
               
chr1:3130329-3130508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
11, 115
               

               
Conread position:
               
130-312
               

               
Cow position:
               
chr1:49024507-49024327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
46, 145
               

               
Conread position:
               
130-314
               

               
Cow position:
               
chr1:41022633-41022455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
49, 90
               

               
Conread position:
               
130-314
               

               
Cow position:
               
chr1:64887294-64887475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
49, 17
               

               
Conread position:
               
130-316
               

               
Cow position:
               
chr1:80385270-80385453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
43, 15
               

               
Conread position:
               
130-321
               

               
Cow position:
               
chr1:22448025-22448226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
49, 160
               

               
Conread position:
               
130-323
               

               
Cow position:
               
chr1:94712946-94713138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
46, 109
               

               
Conread position:
               
130-329
               

               
Cow position:
               
chr1:34323842-34324035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
130-331
               

               
Cow position:
               
chr1:7229469-7229667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
39, 15
               

               
Conread position:
               
130-337
               

               
Cow position:
               
chr1:64458189-64457978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
49, 151
               

               
Conread position:
               
130-338
               

               
Cow position:
               
chr1:101883174-101883382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
45, 146
               

               
Conread position:
               
130-340
               

               
Cow position:
               
chr1:83677109-83677317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
48, 15
               

               
Conread position:
               
130-341
               

               
Cow position:
               
chr1:78782204-78781984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
10, 123
               

               
Conread position:
               
130-341
               

               
Cow position:
               
chr1:89297891-89298101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
39, 10
               

               
Conread position:
               
130-341
               

               
Cow position:
               
chr1:89301500-89301710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
39, 10
               

               
Conread position:
               
130-343
               

               
Cow position:
               
chr1:34001259-34001054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
49, 15
               

               
Conread position:
               
130-343
               

               
Cow position:
               
chr1:63994340-63994548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
49, 17
               

               
Conread position:
               
130-344
               

               
Cow position:
               
chr1:5872558-5872771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
49, 21
               

               
Conread position:
               
130-344
               

               
Cow position:
               
chr1:52450979-52450777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
46, 35
               

               
Conread position:
               
130-350
               

               
Cow position:
               
chr1:4294562-4294344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
49, 110
               

               
Conread position:
               
130-351
               

               
Cow position:
               
chr1:70344261-70344039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
46, 15
               

               
Conread position:
               
130-353
               

               
Cow position:
               
chr1:95156748-95156967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
46, 95
               

               
Conread position:
               
130-355
               

               
Cow position:
               
chr1:14567424-14567640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
7, 97
               

               
Conread position:
               
130-355
               

               
Cow position:
               
chr1:81568814-81569033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
49, 17
               

               
Conread position:
               
130-355
               

               
Cow position:
               
chr1:87083845-87083624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
46, 25
               

               
Conread position:
               
130-359
               

               
Cow position:
               
chr1:7793317-7793530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
49, 80
               

               
Conread position:
               
130-360
               

               
Cow position:
               
chr1:67654110-67654330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
54, 17
               

               
Conread position:
               
130-360
               

               
Cow position:
               
chr1:68688795-68688573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
47, 16
               

               
Conread position:
               
130-360
               

               
Cow position:
               
chr1:95153091-95152861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 147
               

               
Conread position:
               
130-361
               

               
Cow position:
               
chr1:66898277-66898509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
9, 16
               

               
Conread position:
               
130-362
               

               
Cow position:
               
chr1:40489068-40489304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
45, 15
               

               
Conread position:
               
130-362
               

               
Cow position:
               
chr1:70094554-70094322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
54, 15
               

               
Conread position:
               
130-362
               

               
Cow position:
               
chr1:75190004-75189773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
43, 15
               

               
Conread position:
               
130-363
               

               
Cow position:
               
chr1:24777767-24778002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
46, 142
               

               
Conread position:
               
130-365
               

               
Cow position:
               
chr1:5751534-5751298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 77
               

               
Conread position:
               
130-365
               

               
Cow position:
               
chr1:21955156-21955387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
49, 15
               

               
Conread position:
               
130-365
               

               
Cow position:
               
chr1:61005342-61005577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
27, 17
               

               
Conread position:
               
130-365
               

               
Cow position:
               
chr1:72011605-72011828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
46, 88
               

               
Conread position:
               
130-366
               

               
Cow position:
               
chr1:802095-802331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
47, 146
               

               
Conread position:
               
130-368
               

               
Cow position:
               
chr1:52435493-52435254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
11, 147
               

               
Conread position:
               
130-368
               

               
Cow position:
               
chr1:53623173-53622940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
22, 82
               

               
Conread position:
               
130-368
               

               
Cow position:
               
chr1:73020444-73020680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
11, 109
               

               
Conread position:
               
130-368
               

               
Cow position:
               
chr1:86340240-86340482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
12, 155
               

               
Conread position:
               
130-369
               

               
Cow position:
               
chr1:96964536-96964299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
49, 145
               

               
Conread position:
               
130-371
               

               
Cow position:
               
chr1:85688402-85688156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
48, 155
               

               
Conread position:
               
130-372
               

               
Cow position:
               
chr1:54267721-54267958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
28, 98
               

               
Conread position:
               
130-372
               

               
Cow position:
               
chr1:65103846-65103600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
46, 153
               

               
Conread position:
               
130-372
               

               
Cow position:
               
chr1:72422189-72422429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 147
               

               
Conread position:
               
130-372
               

               
Cow position:
               
chr1:81290721-81290485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
47, 72
               

               
Conread position:
               
130-372
               

               
Cow position:
               
chr1:84103841-84104082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
49, 146
               

               
Conread position:
               
130-372
               

               
Cow position:
               
chr1:88913535-88913299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
52, 18
               

               
Conread position:
               
130-372
               

               
Cow position:
               
chr1:96365866-96365643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
46, 71
               

               
Conread position:
               
130-373
               

               
Cow position:
               
chr1:484246-484490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
45, 147
               

               
Conread position:
               
130-373
               

               
Cow position:
               
chr1:635468-635707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
48, 15
               

               
Conread position:
               
130-373
               

               
Cow position:
               
chr1:31572524-31572772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
92, 15
               

               
Conread position:
               
130-373
               

               
Cow position:
               
chr1:51770300-51770064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
8, 42
               

               
Conread position:
               
130-373
               

               
Cow position:
               
chr1:53370300-53370063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 15
               

               
Conread position:
               
130-373
               

               
Cow position:
               
chr1:70227476-70227717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
49, 17
               

               
Conread position:
               
130-373
               

               
Cow position:
               
chr1:72068617-72068857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 29
               

               
Conread position:
               
130-373
               

               
Cow position:
               
chr1:78079940-78079696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
42, 89
               

               
Conread position:
               
130-377
               

               
Cow position:
               
chr1:82880848-82880620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
45, 79
               

               
Conread position:
               
130-377
               

               
Cow position:
               
chr1:100552182-100551944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
43, 16
               

               
Conread position:
               
131-371
               

               
Cow position:
               
chr1:64302035-64302264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
44, 20
               

               
Conread position:
               
131-372
               

               
Cow position:
               
chr1:3324088-3323847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
48, 16
               

               
Conread position:
               
131-372
               

               
Cow position:
               
chr1:102648494-102648256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
48, 9
               

               
Conread position:
               
132-287
               

               
Cow position:
               
chr1:100399992-100400149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
47, 17
               

               
Conread position:
               
132-373
               

               
Cow position:
               
chr1:48443975-48444215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
15, 145
               

               
Conread position:
               
133-264
               

               
Cow position:
               
chr1:93959949-93960078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
44, 14
               

               
Conread position:
               
133-293
               

               
Cow position:
               
chr1:57395290-57395450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
14, 96
               

               
Conread position:
               
133-312
               

               
Cow position:
               
chr1:30028019-30028194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
46, 13
               

               
Conread position:
               
133-313
               

               
Cow position:
               
chr1:7966059-7965883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
46, 14
               

               
Conread position:
               
133-331
               

               
Cow position:
               
chr1:59551653-59551457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
43, 79
               

               
Conread position:
               
133-341
               

               
Cow position:
               
chr1:52679802-52679595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
63, 7
               

               
Conread position:
               
133-342
               

               
Cow position:
               
chr1:71945868-71946076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
46, 14
               

               
Conread position:
               
133-349
               

               
Cow position:
               
chr1:32014406-32014199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
20, 87
               

               
Conread position:
               
133-354
               

               
Cow position:
               
chr1:90621294-90621510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
46, 14
               

               
Conread position:
               
133-358
               

               
Cow position:
               
chr1:102730543-102730771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
45, 150
               

               
Conread position:
               
133-365
               

               
Cow position:
               
chr1:3815469-3815702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
42, 11
               

               
Conread position:
               
133-365
               

               
Cow position:
               
chr1:69694794-69695007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
194, 12
               

               
Conread position:
               
133-368
               

               
Cow position:
               
chr1:102768389-102768163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
43, 90
               

               
Conread position:
               
133-371
               

               
Cow position:
               
chr1:91023256-91023485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
45, 14
               

               
Conread position:
               
133-372
               

               
Cow position:
               
chr1:66752419-66752651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
46, 18
               

               
Conread position:
               
133-372
               

               
Cow position:
               
chr1:73960901-73960682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
14, 41
               

               
Conread position:
               
134-275
               

               
Cow position:
               
chr1:34767506-34767358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
45, 11
               

               
Conread position:
               
134-306
               

               
Cow position:
               
chr1:23050648-23050476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
45, 133
               

               
Conread position:
               
134-340
               

               
Cow position:
               
chr1:25021864-25022065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
13, 87
               

               
Conread position:
               
134-343
               

               
Cow position:
               
chr1:40303760-40303558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
35, 11
               

               
Conread position:
               
134-347
               

               
Cow position:
               
chr1:84595103-84594891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
45, 11
               

               
Conread position:
               
134-355
               

               
Cow position:
               
chr1:6590250-6590028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
44, 148
               

               
Conread position:
               
134-360
               

               
Cow position:
               
chr1:4444625-4444852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
11, 144
               

               
Conread position:
               
134-362
               

               
Cow position:
               
chr1:21508609-21508380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
42, 142
               

               
Conread position:
               
134-365
               

               
Cow position:
               
chr1:7740156-7739933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
42, 86
               

               
Conread position:
               
134-365
               

               
Cow position:
               
chr1:14106396-14106633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
42, 11
               

               
Conread position:
               
134-368
               

               
Cow position:
               
chr1:86061765-86062003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
46, 11
               

               
Conread position:
               
134-371
               

               
Cow position:
               
chr1:100753745-100753508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
34, 151
               

               
Conread position:
               
134-372
               

               
Cow position:
               
chr1:3923592-3923821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
45, 12
               

               
Conread position:
               
134-372
               

               
Cow position:
               
chr1:59519124-59518901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
45, 85
               

               
Conread position:
               
134-372
               

               
Cow position:
               
chr1:68961540-68961307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
43, 142
               

               
Conread position:
               
134-372
               

               
Cow position:
               
chr1:71119733-71119499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
42, 11
               

               
Conread position:
               
134-372
               

               
Cow position:
               
chr1:86579181-86578944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
42, 11
               

               
Conread position:
               
134-372
               

               
Cow position:
               
chr1:99609580-99609350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
45, 77
               

               
Conread position:
               
134-372
               

               
Cow position:
               
chr1:100823252-100823016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
41, 11
               

               
Conread position:
               
134-373
               

               
Cow position:
               
chr1:15547676-15547450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
43, 16
               

               
Conread position:
               
134-377
               

               
Cow position:
               
chr1:6166445-6166219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
42, 74
               

               
Conread position:
               
135-250
               

               
Cow position:
               
chr1:100200556-100200674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
135-262
               

               
Cow position:
               
chr1:36237992-36237861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
135-266
               

               
Cow position:
               
chr1:25076019-25076157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
135-269
               

               
Cow position:
               
chr1:8778125-8778258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
10, 85
               

               
Conread position:
               
135-274
               

               
Cow position:
               
chr1:76222511-76222650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
38, 28
               

               
Conread position:
               
135-275
               

               
Cow position:
               
chr1:36625730-36625586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
135-297
               

               
Cow position:
               
chr1:55260022-55260183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
44, 78
               

               
Conread position:
               
135-297
               

               
Cow position:
               
chr1:74304867-74305029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
44, 141
               

               
Conread position:
               
135-305
               

               
Cow position:
               
chr1:42797088-42796922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
41, 84
               

               
Conread position:
               
135-313
               

               
Cow position:
               
chr1:69250643-69250471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
41, 11
               

               
Conread position:
               
135-314
               

               
Cow position:
               
chr1:89146660-89146838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
44, 142
               

               
Conread position:
               
135-315
               

               
Cow position:
               
chr1:3666821-3666996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
135-316
               

               
Cow position:
               
chr1:64421748-64421575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
40, 87
               

               
Conread position:
               
135-321
               

               
Cow position:
               
chr1:22231863-22231677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
44, 141
               

               
Conread position:
               
135-324
               

               
Cow position:
               
chr1:87934068-87934246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
183, 44
               

               
Conread position:
               
135-328
               

               
Cow position:
               
chr1:3244426-3244233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
44, 148
               

               
Conread position:
               
135-331
               

               
Cow position:
               
chr1:47966808-47967004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
39, 145
               

               
Conread position:
               
135-333
               

               
Cow position:
               
chr1:53441903-53442095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
41, 132
               

               
Conread position:
               
135-333
               

               
Cow position:
               
chr1:69442303-69442501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
44, 147
               

               
Conread position:
               
135-337
               

               
Cow position:
               
chr1:36018572-36018764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
39, 27
               

               
Conread position:
               
135-337
               

               
Cow position:
               
chr1:79631322-79631520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
41, 109
               

               
Conread position:
               
135-337
               

               
Cow position:
               
chr1:94823178-94823379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
44, 10
               

               
Conread position:
               
135-338
               

               
Cow position:
               
chr1:47242248-47242451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
42, 141
               

               
Conread position:
               
135-338
               

               
Cow position:
               
chr1:54569913-54569710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
38, 140
               

               
Conread position:
               
135-339
               

               
Cow position:
               
chr1:98619415-98619210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
19, 142
               

               
Conread position:
               
135-340
               

               
Cow position:
               
chr1:63241188-63240983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
42, 141
               

               
Conread position:
               
135-340
               

               
Cow position:
               
chr1:86486891-86486686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
42, 141
               

               
Conread position:
               
135-341
               

               
Cow position:
               
chr1:85622744-85622538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
44, 142
               

               
Conread position:
               
135-341
               

               
Cow position:
               
chr1:99637040-99637245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
44, 11
               

               
Conread position:
               
135-342
               

               
Cow position:
               
chr1:12090553-12090358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
13, 19
               

               
Conread position:
               
135-343
               

               
Cow position:
               
chr1:31231528-31231735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
39, 145
               

               
Conread position:
               
135-344
               

               
Cow position:
               
chr1:1605919-1606128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
39, 142
               

               
Conread position:
               
135-344
               

               
Cow position:
               
chr1:83004877-83004659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
42, 98
               

               
Conread position:
               
135-348
               

               
Cow position:
               
chr1:84782536-84782749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
42, 141
               

               
Conread position:
               
135-349
               

               
Cow position:
               
chr1:5821728-5821514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
34, 145
               

               
Conread position:
               
135-350
               

               
Cow position:
               
chr1:56913321-56913529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
41, 11
               

               
Conread position:
               
135-351
               

               
Cow position:
               
chr1:1878235-1878019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
40, 73
               

               
Conread position:
               
135-353
               

               
Cow position:
               
chr1:48618036-48618247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
44, 11
               

               
Conread position:
               
135-354
               

               
Cow position:
               
chr1:88397630-88397847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
34, 141
               

               
Conread position:
               
135-355
               

               
Cow position:
               
chr1:150712-150930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
42, 30
               

               
Conread position:
               
135-355
               

               
Cow position:
               
chr1:21954015-21954226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
44, 80
               

               
Conread position:
               
135-355
               

               
Cow position:
               
chr1:29481415-29481636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
42, 142
               

               
Conread position:
               
135-355
               

               
Cow position:
               
chr1:51435991-51435774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
41, 138
               

               
Conread position:
               
135-355
               

               
Cow position:
               
chr1:72841552-72841330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
41, 110
               

               
Conread position:
               
135-355
               

               
Cow position:
               
chr1:82870303-82870529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
41, 91
               

               
Conread position:
               
135-355
               

               
Cow position:
               
chr1:92197665-92197450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
45, 11
               

               
Conread position:
               
135-357
               

               
Cow position:
               
chr1:5776359-5776135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
22, 148
               

               
Conread position:
               
135-357
               

               
Cow position:
               
chr1:82336883-82336671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
44, 92
               

               
Conread position:
               
135-358
               

               
Cow position:
               
chr1:52673963-52674183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
40, 135
               

               
Conread position:
               
135-360
               

               
Cow position:
               
chr1:9637242-9637018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
41, 91
               

               
Conread position:
               
135-360
               

               
Cow position:
               
chr1:22461032-22461248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
135-360
               

               
Cow position:
               
chr1:46693438-46693663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
14, 115
               

               
Conread position:
               
135-361
               

               
Cow position:
               
chr1:62998014-62997788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
20, 145
               

               
Conread position:
               
135-362
               

               
Cow position:
               
chr1:4582762-4582538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
41, 138
               

               
Conread position:
               
135-363
               

               
Cow position:
               
chr1:6790986-6790762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
41, 134
               

               
Conread position:
               
135-364
               

               
Cow position:
               
chr1:91065946-91066165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
41, 11
               

               
Conread position:
               
135-365
               

               
Cow position:
               
chr1:37726202-37726435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
44, 145
               

               
Conread position:
               
135-368
               

               
Cow position:
               
chr1:13547772-13548003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
41, 30
               

               
Conread position:
               
135-368
               

               
Cow position:
               
chr1:14308817-14309050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
42, 141
               

               
Conread position:
               
135-368
               

               
Cow position:
               
chr1:28058753-28058985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
42, 109
               

               
Conread position:
               
135-368
               

               
Cow position:
               
chr1:31934716-31934489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
44, 89
               

               
Conread position:
               
135-368
               

               
Cow position:
               
chr1:77620761-77620528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
41, 134
               

               
Conread position:
               
135-368
               

               
Cow position:
               
chr1:77739935-77739704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
37, 16
               

               
Conread position:
               
135-368
               

               
Cow position:
               
chr1:96304762-96304987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
44, 25
               

               
Conread position:
               
135-370
               

               
Cow position:
               
chr1:49317289-49317516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
34, 91
               

               
Conread position:
               
135-371
               

               
Cow position:
               
chr1:186069-186294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
67, 39
               

               
Conread position:
               
135-371
               

               
Cow position:
               
chr1:2122355-2122591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
42, 141
               

               
Conread position:
               
135-371
               

               
Cow position:
               
chr1:6731390-6731161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
44, 10
               

               
Conread position:
               
135-371
               

               
Cow position:
               
chr1:35162617-35162389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
42, 55
               

               
Conread position:
               
135-371
               

               
Cow position:
               
chr1:43311560-43311794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
30, 41
               

               
Conread position:
               
135-371
               

               
Cow position:
               
chr1:76037301-76037537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
41, 10
               

               
Conread position:
               
135-371
               

               
Cow position:
               
chr1:81481176-81481402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
44, 12
               

               
Conread position:
               
135-371
               

               
Cow position:
               
chr1:96019440-96019210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
41, 138
               

               
Conread position:
               
135-371
               

               
Cow position:
               
chr1:102468410-102468636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
135-372
               

               
Cow position:
               
chr1:628179-627939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
44, 11
               

               
Conread position:
               
135-372
               

               
Cow position:
               
chr1:7752591-7752358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
41, 11
               

               
Conread position:
               
135-372
               

               
Cow position:
               
chr1:10716717-10716477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
40, 146
               

               
Conread position:
               
135-372
               

               
Cow position:
               
chr1:11771871-11772107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
41, 137
               

               
Conread position:
               
135-372
               

               
Cow position:
               
chr1:15206670-15206893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
135-372
               

               
Cow position:
               
chr1:16961782-16962031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
44, 155
               

               
Conread position:
               
135-372
               

               
Cow position:
               
chr1:25735080-25734847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
46, 140
               

               
Conread position:
               
135-372
               

               
Cow position:
               
chr1:26895600-26895833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
44, 93
               

               
Conread position:
               
135-372
               

               
Cow position:
               
chr1:30862201-30862431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
21, 142
               

               
Conread position:
               
135-372
               

               
Cow position:
               
chr1:36080039-36079801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
42, 141
               

               
Conread position:
               
135-372
               

               
Cow position:
               
chr1:38419239-38419006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
17, 147
               

               
Conread position:
               
135-372
               

               
Cow position:
               
chr1:51609590-51609354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
41, 141
               

               
Conread position:
               
135-372
               

               
Cow position:
               
chr1:52496980-52496751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
135-372
               

               
Cow position:
               
chr1:55230185-55229954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
39, 89
               

               
Conread position:
               
135-372
               

               
Cow position:
               
chr1:63530771-63530537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
44, 100
               

               
Conread position:
               
135-372
               

               
Cow position:
               
chr1:68688406-68688169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
42, 141
               

               
Conread position:
               
135-372
               

               
Cow position:
               
chr1:69227242-69227462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
135-372
               

               
Cow position:
               
chr1:75411624-75411861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
42, 141
               

               
Conread position:
               
135-372
               

               
Cow position:
               
chr1:79846035-79846273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
42, 143
               

               
Conread position:
               
135-372
               

               
Cow position:
               
chr1:84905848-84906085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
42, 137
               

               
Conread position:
               
135-372
               

               
Cow position:
               
chr1:87072906-87072678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
44, 68
               

               
Conread position:
               
135-372
               

               
Cow position:
               
chr1:87095001-87095235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
34, 18
               

               
Conread position:
               
135-372
               

               
Cow position:
               
chr1:91649203-91649439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
42, 140
               

               
Conread position:
               
135-372
               

               
Cow position:
               
chr1:91755495-91755258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
44, 141
               

               
Conread position:
               
135-372
               

               
Cow position:
               
chr1:92684469-92684716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
42, 243
               

               
Conread position:
               
135-372
               

               
Cow position:
               
chr1:94226333-94226575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
39, 10
               

               
Conread position:
               
135-372
               

               
Cow position:
               
chr1:95638049-95637810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
13, 143
               

               
Conread position:
               
135-373
               

               
Cow position:
               
chr1:15334100-15333873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
34, 91
               

               
Conread position:
               
135-373
               

               
Cow position:
               
chr1:36921233-36920995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
42, 141
               

               
Conread position:
               
135-373
               

               
Cow position:
               
chr1:57575552-57575788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
37, 89
               

               
Conread position:
               
135-373
               

               
Cow position:
               
chr1:67585763-67585538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
43, 120
               

               
Conread position:
               
135-373
               

               
Cow position:
               
chr1:79164871-79165104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
43, 11
               

               
Conread position:
               
135-373
               

               
Cow position:
               
chr1:89872179-89871944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
38, 11
               

               
Conread position:
               
135-374
               

               
Cow position:
               
chr1:68217154-68217384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
41, 139
               

               
Conread position:
               
135-374
               

               
Cow position:
               
chr1:98468014-98467780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
44, 146
               

               
Conread position:
               
135-376
               

               
Cow position:
               
chr1:20667539-20667767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
41, 11
               

               
Conread position:
               
135-376
               

               
Cow position:
               
chr1:97232181-97231935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
42, 12
               

               
Conread position:
               
136-293
               

               
Cow position:
               
chr1:39095696-39095545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
41, 99
               

               
Conread position:
               
136-303
               

               
Cow position:
               
chr1:100152495-100152325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
37, 145
               

               
Conread position:
               
136-331
               

               
Cow position:
               
chr1:10155861-10156056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
31, 141
               

               
Conread position:
               
136-331
               

               
Cow position:
               
chr1:32217449-32217261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
41, 80
               

               
Conread position:
               
136-333
               

               
Cow position:
               
chr1:34731260-34731061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
27, 143
               

               
Conread position:
               
136-335
               

               
Cow position:
               
chr1:4573937-4573739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
11, 109
               

               
Conread position:
               
136-340
               

               
Cow position:
               
chr1:63461089-63460888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
38, 76
               

               
Conread position:
               
136-341
               

               
Cow position:
               
chr1:65030279-65030076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
38, 11
               

               
Conread position:
               
136-341
               

               
Cow position:
               
chr1:73534432-73534632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
41, 9
               

               
Conread position:
               
136-348
               

               
Cow position:
               
chr1:76739703-76739908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
43, 55
               

               
Conread position:
               
136-354
               

               
Cow position:
               
chr1:31765159-31765378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
41, 140
               

               
Conread position:
               
136-362
               

               
Cow position:
               
chr1:91651137-91651369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
38, 139
               

               
Conread position:
               
136-363
               

               
Cow position:
               
chr1:40078001-40077778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
43, 84
               

               
Conread position:
               
136-364
               

               
Cow position:
               
chr1:29474141-29474361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
136-364
               

               
Cow position:
               
chr1:38277815-38278042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
43, 108
               

               
Conread position:
               
136-365
               

               
Cow position:
               
chr1:39417920-39418126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
136-365
               

               
Cow position:
               
chr1:40530896-40531115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
30, 16
               

               
Conread position:
               
136-365
               

               
Cow position:
               
chr1:71789937-71790163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
43, 62
               

               
Conread position:
               
136-365
               

               
Cow position:
               
chr1:92075691-92075474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
43, 81
               

               
Conread position:
               
136-366
               

               
Cow position:
               
chr1:74027018-74027253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
43, 26
               

               
Conread position:
               
136-368
               

               
Cow position:
               
chr1:500387-500157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
43, 91
               

               
Conread position:
               
136-368
               

               
Cow position:
               
chr1:10941887-10942112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
40, 73
               

               
Conread position:
               
136-368
               

               
Cow position:
               
chr1:10964499-10964274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
40, 73
               

               
Conread position:
               
136-371
               

               
Cow position:
               
chr1:42482411-42482182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
31, 86
               

               
Conread position:
               
136-371
               

               
Cow position:
               
chr1:78857117-78857349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
43, 11
               

               
Conread position:
               
136-372
               

               
Cow position:
               
chr1:874874-874633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
43, 146
               

               
Conread position:
               
136-372
               

               
Cow position:
               
chr1:30035435-30035195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
42, 128
               

               
Conread position:
               
136-372
               

               
Cow position:
               
chr1:89741785-89742022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
67, 33
               

               
Conread position:
               
136-373
               

               
Cow position:
               
chr1:34771289-34771525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
40, 17
               

               
Conread position:
               
136-377
               

               
Cow position:
               
chr1:98897479-98897721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
40, 147
               

               
Conread position:
               
137-273
               

               
Cow position:
               
chr1:8134134-8133996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
38, 8
               

               
Conread position:
               
137-322
               

               
Cow position:
               
chr1:3154818-3155006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
11, 28
               

               
Conread position:
               
137-324
               

               
Cow position:
               
chr1:61247577-61247390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
42, 138
               

               
Conread position:
               
137-335
               

               
Cow position:
               
chr1:46939667-46939870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
39, 144
               

               
Conread position:
               
137-343
               

               
Cow position:
               
chr1:7306178-7305975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
32, 17
               

               
Conread position:
               
137-355
               

               
Cow position:
               
chr1:45315423-45315641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
42, 10
               

               
Conread position:
               
137-358
               

               
Cow position:
               
chr1:1496317-1496540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 142
               

               
Conread position:
               
137-362
               

               
Cow position:
               
chr1:31794798-31795017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
29, 21
               

               
Conread position:
               
137-364
               

               
Cow position:
               
chr1:8828-8601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
39, 135
               

               
Conread position:
               
137-368
               

               
Cow position:
               
chr1:6102690-6102927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
42, 141
               

               
Conread position:
               
137-372
               

               
Cow position:
               
chr1:10778764-10778542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
137-372
               

               
Cow position:
               
chr1:41027282-41027052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
42, 87
               

               
Conread position:
               
137-372
               

               
Cow position:
               
chr1:53521115-53520890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
137-372
               

               
Cow position:
               
chr1:65318787-65318554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 114
               

               
Conread position:
               
137-372
               

               
Cow position:
               
chr1:73721574-73721339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
42, 141
               

               
Conread position:
               
137-372
               

               
Cow position:
               
chr1:74083980-74084210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
42, 10
               

               
Conread position:
               
137-372
               

               
Cow position:
               
chr1:77986206-77986447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
42, 138
               

               
Conread position:
               
137-373
               

               
Cow position:
               
chr1:6394767-6394535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
42, 80
               

               
Conread position:
               
137-373
               

               
Cow position:
               
chr1:14759146-14759383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
194, 117
               

               
Conread position:
               
137-374
               

               
Cow position:
               
chr1:14006335-14006092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
42, 140
               

               
Conread position:
               
137-375
               

               
Cow position:
               
chr1:20871346-20871583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
38, 144
               

               
Conread position:
               
138-316
               

               
Cow position:
               
chr1:66445165-66444994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
38, 82
               

               
Conread position:
               
138-341
               

               
Cow position:
               
chr1:56719549-56719349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
41, 98
               

               
Conread position:
               
138-347
               

               
Cow position:
               
chr1:87888599-87888392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
38, 90
               

               
Conread position:
               
138-362
               

               
Cow position:
               
chr1:12222396-12222619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
34, 7
               

               
Conread position:
               
138-365
               

               
Cow position:
               
chr1:15103093-15102874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
41, 89
               

               
Conread position:
               
138-368
               

               
Cow position:
               
chr1:87198037-87197802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
31, 89
               

               
Conread position:
               
138-371
               

               
Cow position:
               
chr1:76612925-76613155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
38, 9
               

               
Conread position:
               
138-372
               

               
Cow position:
               
chr1:3966037-3965815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
138-372
               

               
Cow position:
               
chr1:74832637-74832400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
38, 116
               

               
Conread position:
               
138-373
               

               
Cow position:
               
chr1:55705039-55705268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
46, 7
               

               
Conread position:
               
138-373
               

               
Cow position:
               
chr1:83072650-83072418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
41, 15
               

               
Conread position:
               
139-297
               

               
Cow position:
               
chr1:31274779-31274937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
40, 137
               

               
Conread position:
               
139-312
               

               
Cow position:
               
chr1:43379153-43379324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
40, 82
               

               
Conread position:
               
139-315
               

               
Cow position:
               
chr1:42775114-42774945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
47, 41
               

               
Conread position:
               
139-316
               

               
Cow position:
               
chr1:22828365-22828536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
36, 81
               

               
Conread position:
               
139-317
               

               
Cow position:
               
chr1:46795963-46795791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
37, 14
               

               
Conread position:
               
139-343
               

               
Cow position:
               
chr1:81473366-81473162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
36, 138
               

               
Conread position:
               
139-345
               

               
Cow position:
               
chr1:87149608-87149810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
40, 68
               

               
Conread position:
               
139-346
               

               
Cow position:
               
chr1:95049657-95049860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
37, 134
               

               
Conread position:
               
139-349
               

               
Cow position:
               
chr1:81364471-81364261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
40, 138
               

               
Conread position:
               
139-351
               

               
Cow position:
               
chr1:91861089-91861300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
38, 137
               

               
Conread position:
               
139-354
               

               
Cow position:
               
chr1:42175936-42175718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
40, 87
               

               
Conread position:
               
139-354
               

               
Cow position:
               
chr1:100852910-100852705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
139-355
               

               
Cow position:
               
chr1:29329754-29329536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
38, 138
               

               
Conread position:
               
139-355
               

               
Cow position:
               
chr1:68817594-68817802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
30, 12
               

               
Conread position:
               
139-356
               

               
Cow position:
               
chr1:99604985-99605193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
38, 7
               

               
Conread position:
               
139-365
               

               
Cow position:
               
chr1:242760-242542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
36, 80
               

               
Conread position:
               
139-365
               

               
Cow position:
               
chr1:50432273-50432501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
39, 138
               

               
Conread position:
               
139-368
               

               
Cow position:
               
chr1:73457888-73458113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
37, 7
               

               
Conread position:
               
139-369
               

               
Cow position:
               
chr1:25383877-25383650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
38, 87
               

               
Conread position:
               
139-372
               

               
Cow position:
               
chr1:6294286-6294522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
33, 137
               

               
Conread position:
               
139-372
               

               
Cow position:
               
chr1:23186594-23186819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
40, 77
               

               
Conread position:
               
139-372
               

               
Cow position:
               
chr1:41289572-41289799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
40, 15
               

               
Conread position:
               
139-372
               

               
Cow position:
               
chr1:43352445-43352675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 138
               

               
Conread position:
               
139-377
               

               
Cow position:
               
chr1:41056887-41056651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
38, 23
               

               
Conread position:
               
140-308
               

               
Cow position:
               
chr1:44321390-44321556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
38, 100
               

               
Conread position:
               
140-314
               

               
Cow position:
               
chr1:33720311-33720137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
39, 135
               

               
Conread position:
               
140-332
               

               
Cow position:
               
chr1:32035507-32035692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
36, 85
               

               
Conread position:
               
140-341
               

               
Cow position:
               
chr1:39683936-39684136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
39, 11
               

               
Conread position:
               
140-341
               

               
Cow position:
               
chr1:46172811-46172614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
45, 11
               

               
Conread position:
               
140-355
               

               
Cow position:
               
chr1:26178601-26178816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
37, 136
               

               
Conread position:
               
140-355
               

               
Cow position:
               
chr1:71770099-71770314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
37, 112
               

               
Conread position:
               
140-358
               

               
Cow position:
               
chr1:101280531-101280742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
38, 15
               

               
Conread position:
               
140-362
               

               
Cow position:
               
chr1:62519573-62519353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
39, 135
               

               
Conread position:
               
140-364
               

               
Cow position:
               
chr1:81391129-81390908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
39, 128
               

               
Conread position:
               
140-365
               

               
Cow position:
               
chr1:1956131-1956348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
22, 36
               

               
Conread position:
               
140-365
               

               
Cow position:
               
chr1:2075143-2075365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
34, 97
               

               
Conread position:
               
140-365
               

               
Cow position:
               
chr1:22192977-22192754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
39, 70
               

               
Conread position:
               
140-371
               

               
Cow position:
               
chr1:19515410-19515639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
39, 54
               

               
Conread position:
               
140-371
               

               
Cow position:
               
chr1:49980915-49980690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
33, 78
               

               
Conread position:
               
140-371
               

               
Cow position:
               
chr1:76735272-76735499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
38, 54
               

               
Conread position:
               
140-371
               

               
Cow position:
               
chr1:95558246-95558017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
39, 22
               

               
Conread position:
               
140-372
               

               
Cow position:
               
chr1:11913674-11913900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
100, 36
               

               
Conread position:
               
140-372
               

               
Cow position:
               
chr1:13414229-13414010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
89, 52
               

               
Conread position:
               
140-372
               

               
Cow position:
               
chr1:86056871-86057092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
38, 83
               

               
Conread position:
               
140-373
               

               
Cow position:
               
chr1:6826085-6826318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
45, 145
               

               
Conread position:
               
140-373
               

               
Cow position:
               
chr1:20950924-20950694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
40, 141
               

               
Conread position:
               
140-373
               

               
Cow position:
               
chr1:55753012-55753237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
37, 83
               

               
Conread position:
               
140-373
               

               
Cow position:
               
chr1:57089472-57089702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 16
               

               
Conread position:
               
140-373
               

               
Cow position:
               
chr1:92524223-92523992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
34, 11
               

               
Conread position:
               
141-274
               

               
Cow position:
               
chr1:1915821-1915955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
38, 99
               

               
Conread position:
               
141-275
               

               
Cow position:
               
chr1:83246634-83246496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
141-293
               

               
Cow position:
               
chr1:50854119-50853965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
38, 136
               

               
Conread position:
               
141-297
               

               
Cow position:
               
chr1:90192626-90192469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
38, 135
               

               
Conread position:
               
141-298
               

               
Cow position:
               
chr1:67771977-67772129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
141-327
               

               
Cow position:
               
chr1:4618536-4618720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
35, 134
               

               
Conread position:
               
141-334
               

               
Cow position:
               
chr1:52509558-52509750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
38, 134
               

               
Conread position:
               
141-342
               

               
Cow position:
               
chr1:49297857-49297659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
34, 73
               

               
Conread position:
               
141-342
               

               
Cow position:
               
chr1:69411489-69411690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
35, 46
               

               
Conread position:
               
141-342
               

               
Cow position:
               
chr1:98380089-98380289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
38, 107
               

               
Conread position:
               
141-343
               

               
Cow position:
               
chr1:96518908-96518700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
28, 143
               

               
Conread position:
               
141-344
               

               
Cow position:
               
chr1:731764-731970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
35, 131
               

               
Conread position:
               
141-355
               

               
Cow position:
               
chr1:52912686-52912902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
38, 143
               

               
Conread position:
               
141-363
               

               
Cow position:
               
chr1:53394281-53394052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
38, 123
               

               
Conread position:
               
141-364
               

               
Cow position:
               
chr1:89076417-89076647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
35, 138
               

               
Conread position:
               
141-365
               

               
Cow position:
               
chr1:21578016-21577793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
35, 97
               

               
Conread position:
               
141-365
               

               
Cow position:
               
chr1:53374633-53374419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
36, 83
               

               
Conread position:
               
141-365
               

               
Cow position:
               
chr1:90267930-90267706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
38, 137
               

               
Conread position:
               
141-371
               

               
Cow position:
               
chr1:64572720-64572495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
38, 85
               

               
Conread position:
               
141-372
               

               
Cow position:
               
chr1:21561226-21560991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
28, 144
               

               
Conread position:
               
141-372
               

               
Cow position:
               
chr1:52139422-52139655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
38, 97
               

               
Conread position:
               
141-372
               

               
Cow position:
               
chr1:88360091-88359856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
32, 143
               

               
Conread position:
               
141-372
               

               
Cow position:
               
chr1:102266064-102266289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
34, 77
               

               
Conread position:
               
141-373
               

               
Cow position:
               
chr1:8287423-8287652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
12, 74
               

               
Conread position:
               
141-374
               

               
Cow position:
               
chr1:64803891-64804126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 138
               

               
Conread position:
               
141-374
               

               
Cow position:
               
chr1:95101157-95100931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
28, 71
               

               
Conread position:
               
141-375
               

               
Cow position:
               
chr1:93590384-93590610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
36, 77
               

               
Conread position:
               
142-247
               

               
Cow position:
               
chr1:60567993-60568100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
142-322
               

               
Cow position:
               
chr1:60403974-60403794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
34, 135
               

               
Conread position:
               
142-337
               

               
Cow position:
               
chr1:77685773-77685968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
35, 133
               

               
Conread position:
               
142-341
               

               
Cow position:
               
chr1:58420403-58420212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
34, 76
               

               
Conread position:
               
142-344
               

               
Cow position:
               
chr1:1802370-1802169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
182, 33
               

               
Conread position:
               
142-349
               

               
Cow position:
               
chr1:98583953-98583753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
37, 76
               

               
Conread position:
               
142-355
               

               
Cow position:
               
chr1:89388548-89388335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
37, 75
               

               
Conread position:
               
142-356
               

               
Cow position:
               
chr1:7443187-7442969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
34, 135
               

               
Conread position:
               
142-363
               

               
Cow position:
               
chr1:10674353-10674138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
160, 32
               

               
Conread position:
               
142-363
               

               
Cow position:
               
chr1:79719013-79718797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
37, 113
               

               
Conread position:
               
142-364
               

               
Cow position:
               
chr1:36688175-36688392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
142-368
               

               
Cow position:
               
chr1:84283276-84283056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
142-369
               

               
Cow position:
               
chr1:71350519-71350746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
34, 138
               

               
Conread position:
               
142-371
               

               
Cow position:
               
chr1:26201439-26201215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
34, 23
               

               
Conread position:
               
142-371
               

               
Cow position:
               
chr1:81515444-81515213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
37, 138
               

               
Conread position:
               
142-372
               

               
Cow position:
               
chr1:38706648-38706875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 93
               

               
Conread position:
               
142-372
               

               
Cow position:
               
chr1:54258774-54258546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 139
               

               
Conread position:
               
142-372
               

               
Cow position:
               
chr1:61846363-61846124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
37, 153
               

               
Conread position:
               
142-372
               

               
Cow position:
               
chr1:75250317-75250094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
34, 45
               

               
Conread position:
               
143-355
               

               
Cow position:
               
chr1:6972729-6972521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
30, 10
               

               
Conread position:
               
143-359
               

               
Cow position:
               
chr1:20125999-20125787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
36, 125
               

               
Conread position:
               
143-365
               

               
Cow position:
               
chr1:61011379-61011166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
36, 69
               

               
Conread position:
               
144-358
               

               
Cow position:
               
chr1:97540842-97540627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
35, 121
               

               
Conread position:
               
144-369
               

               
Cow position:
               
chr1:16766883-16767103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
35, 95
               

               
Conread position:
               
145-297
               

               
Cow position:
               
chr1:11107449-11107297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
30, 136
               

               
Conread position:
               
145-305
               

               
Cow position:
               
chr1:18764423-18764576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
145-340
               

               
Cow position:
               
chr1:46886431-46886239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
77, 127
               

               
Conread position:
               
145-341
               

               
Cow position:
               
chr1:68710486-68710286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
31, 135
               

               
Conread position:
               
145-344
               

               
Cow position:
               
chr1:96201113-96201310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
34, 117
               

               
Conread position:
               
145-360
               

               
Cow position:
               
chr1:1489203-1489410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
37, 92
               

               
Conread position:
               
145-364
               

               
Cow position:
               
chr1:51860362-51860575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
34, 74
               

               
Conread position:
               
145-365
               

               
Cow position:
               
chr1:38754119-38753908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
34, 70
               

               
Conread position:
               
145-365
               

               
Cow position:
               
chr1:100474441-100474219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
34, 139
               

               
Conread position:
               
145-371
               

               
Cow position:
               
chr1:24908841-24909073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
33, 17
               

               
Conread position:
               
145-371
               

               
Cow position:
               
chr1:61741762-61741987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
28, 131
               

               
Conread position:
               
145-371
               

               
Cow position:
               
chr1:81858699-81858923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
34, 71
               

               
Conread position:
               
145-372
               

               
Cow position:
               
chr1:31607692-31607909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
213, 14
               

               
Conread position:
               
145-374
               

               
Cow position:
               
chr1:22035810-22035588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
29, 79
               

               
Conread position:
               
145-374
               

               
Cow position:
               
chr1:50765816-50765589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
29, 132
               

               
Conread position:
               
146-361
               

               
Cow position:
               
chr1:759211-759429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
36, 132
               

               
Conread position:
               
146-372
               

               
Cow position:
               
chr1:43872108-43872340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
33, 128
               

               
Conread position:
               
149-316
               

               
Cow position:
               
chr1:26984210-26984043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
25, 131
               

               
Conread position:
               
149-363
               

               
Cow position:
               
chr1:96558648-96558863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
30, 123
               

               
Conread position:
               
149-372
               

               
Cow position:
               
chr1:17742924-17742703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
24, 45
               

               
Conread position:
               
150-373
               

               
Cow position:
               
chr1:57088049-57087819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
26, 116
               

               
Conread position:
               
151-271
               

               
Cow position:
               
chr1:72650365-72650490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
151-337
               

               
Cow position:
               
chr1:70416564-70416747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
28, 74
               

               
Conread position:
               
151-342
               

               
Cow position:
               
chr1:78029830-78030024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
28, 132
               

               
Conread position:
               
151-348
               

               
Cow position:
               
chr1:83606260-83606448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
151-363
               

               
Cow position:
               
chr1:6381972-6381759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
23, 124
               

               
Conread position:
               
151-365
               

               
Cow position:
               
chr1:97717380-97717587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
24, 65
               

               
Conread position:
               
151-372
               

               
Cow position:
               
chr1:12464474-12464685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
151-372
               

               
Cow position:
               
chr1:30983296-30983513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
18, 126
               

               
Conread position:
               
151-372
               

               
Cow position:
               
chr1:98422200-98421979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
28, 130
               

               
Conread position:
               
152-372
               

               
Cow position:
               
chr1:31347739-31347955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
28, 73
               

               
Conread position:
               
153-308
               

               
Cow position:
               
chr1:96482860-96482706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
21, 12
               

               
Conread position:
               
153-340
               

               
Cow position:
               
chr1:81638733-81638558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
26, 57
               

               
Conread position:
               
153-350
               

               
Cow position:
               
chr1:23633733-23633932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
26, 128
               

               
Conread position:
               
153-352
               

               
Cow position:
               
chr1:76518619-76518420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
24, 123
               

               
Conread position:
               
153-366
               

               
Cow position:
               
chr1:48447664-48447456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
26, 121
               

               
Conread position:
               
153-366
               

               
Cow position:
               
chr1:78034711-78034922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
26, 73
               

               
Conread position:
               
153-368
               

               
Cow position:
               
chr1:49082940-49082725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
24, 123
               

               
Conread position:
               
153-368
               

               
Cow position:
               
chr1:60045181-60044970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
26, 91
               

               
Conread position:
               
153-368
               

               
Cow position:
               
chr1:88618801-88618578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
26, 38
               

               
Conread position:
               
153-371
               

               
Cow position:
               
chr1:63079195-63078990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
21, 56
               

               
Conread position:
               
153-372
               

               
Cow position:
               
chr1:47886286-47886504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
23, 64
               

               
Conread position:
               
153-372
               

               
Cow position:
               
chr1:60987186-60986967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
26, 123
               

               
Conread position:
               
153-373
               

               
Cow position:
               
chr1:95618835-95618619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
26, 74
               

               
Conread position:
               
154-275
               

               
Cow position:
               
chr1:66693708-66693830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
154-335
               

               
Cow position:
               
chr1:40181428-40181610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
21, 122
               

               
Conread position:
               
154-335
               

               
Cow position:
               
chr1:63905071-63905244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
25, 59
               

               
Conread position:
               
154-336
               

               
Cow position:
               
chr1:38055313-38055487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
22, 68
               

               
Conread position:
               
154-336
               

               
Cow position:
               
chr1:84815328-84815143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
17, 130
               

               
Conread position:
               
154-339
               

               
Cow position:
               
chr1:81668619-81668806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
22, 123
               

               
Conread position:
               
154-341
               

               
Cow position:
               
chr1:81179161-81179339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
122, 14
               

               
Conread position:
               
154-343
               

               
Cow position:
               
chr1:50708346-50708157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
23, 122
               

               
Conread position:
               
154-344
               

               
Cow position:
               
chr1:78793810-78793997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
25, 59
               

               
Conread position:
               
154-344
               

               
Cow position:
               
chr1:88391294-88391109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
22, 82
               

               
Conread position:
               
154-349
               

               
Cow position:
               
chr1:69691519-69691714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
22, 123
               

               
Conread position:
               
154-355
               

               
Cow position:
               
chr1:61134608-61134399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
20, 127
               

               
Conread position:
               
154-364
               

               
Cow position:
               
chr1:45019613-45019815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
20, 54
               

               
Conread position:
               
154-365
               

               
Cow position:
               
chr1:45223769-45223566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
15, 69
               

               
Conread position:
               
154-365
               

               
Cow position:
               
chr1:65639116-65638900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
25, 100
               

               
Conread position:
               
154-368
               

               
Cow position:
               
chr1:6941659-6941442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
23, 67
               

               
Conread position:
               
154-368
               

               
Cow position:
               
chr1:6959072-6958855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
23, 67
               

               
Conread position:
               
154-371
               

               
Cow position:
               
chr1:2972113-2971896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
23, 122
               

               
Conread position:
               
154-371
               

               
Cow position:
               
chr1:78810073-78809854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
75, 124
               

               
Conread position:
               
154-372
               

               
Cow position:
               
chr1:31348246-31348458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
16, 23
               

               
Conread position:
               
154-372
               

               
Cow position:
               
chr1:34856432-34856649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 123
               

               
Conread position:
               
154-372
               

               
Cow position:
               
chr1:72813810-72813595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 121
               

               
Conread position:
               
154-376
               

               
Cow position:
               
chr1:47288437-47288215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
25, 127
               

               
Conread position:
               
155-312
               

               
Cow position:
               
chr1:25956088-25955933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
24, 81
               

               
Conread position:
               
155-355
               

               
Cow position:
               
chr1:71078770-71078965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
24, 61
               

               
Conread position:
               
155-372
               

               
Cow position:
               
chr1:86113204-86113421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
18, 117
               

               
Conread position:
               
156-355
               

               
Cow position:
               
chr1:101525729-101525930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
22, 121
               

               
Conread position:
               
156-365
               

               
Cow position:
               
chr1:6228390-6228599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
23, 89
               

               
Conread position:
               
156-368
               

               
Cow position:
               
chr1:98413967-98413754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
17, 128
               

               
Conread position:
               
156-371
               

               
Cow position:
               
chr1:96081669-96081460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
24, 68
               

               
Conread position:
               
158-372
               

               
Cow position:
               
chr1:2975800-2976016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
16, 123
               

               
Conread position:
               
158-373
               

               
Cow position:
               
chr1:31256041-31256245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
21, 61
               

               
Conread position:
               
158-373
               

               
Cow position:
               
chr1:93528883-93528674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
16, 55
               

               
Conread position:
               
161-355
               

               
Cow position:
               
chr1:52619016-52618824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
16, 34
               

               
Conread position:
               
161-364
               

               
Cow position:
               
chr1:1499504-1499707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
18, 116
               

               
Conread position:
               
162-364
               

               
Cow position:
               
chr1:6031810-6031610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
14, 89
               

               
Conread position:
               
163-343
               

               
Cow position:
               
chr1:88926198-88926372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
13, 111
               

               
Conread position:
               
164-368
               

               
Cow position:
               
chr1:54625115-54624911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
19, 111
               

               
Conread position:
               
175-326
               

               
Cow position:
               
chr1:81471519-81471379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
175-328
               

               
Cow position:
               
chr1:23373029-23372881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
175-333
               

               
Cow position:
               
chr1:70146740-70146894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
175-338
               

               
Cow position:
               
chr1:69532358-69532511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
175-345
               

               
Cow position:
               
chr1:31630115-31630282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
39, 99
               

               
Conread position:
               
175-356
               

               
Cow position:
               
chr1:54694792-54694614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
140, 96
               

               
Conread position:
               
175-365
               

               
Cow position:
               
chr1:69940656-69940838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
77, 42
               

               
Conread position:
               
175-372
               

               
Cow position:
               
chr1:1053750-1053559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
175-372
               

               
Cow position:
               
chr1:33409455-33409646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
175-372
               

               
Cow position:
               
chr1:49433093-49433286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
175-372
               

               
Cow position:
               
chr1:70297450-70297256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
17, 98
               

               
Conread position:
               
175-372
               

               
Cow position:
               
chr1:99642201-99642389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
175-373
               

               
Cow position:
               
chr1:11729339-11729152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
176-297
               

               
Cow position:
               
chr1:81611492-81611372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
101, 46
               

               
Conread position:
               
176-370
               

               
Cow position:
               
chr1:76019530-76019713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
176-372
               

               
Cow position:
               
chr1:635364-635172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
176-372
               

               
Cow position:
               
chr1:48581297-48581108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
176-373
               

               
Cow position:
               
chr1:91811949-91811760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
58, 104
               

               
Conread position:
               
178-368
               

               
Cow position:
               
chr1:52487813-52487998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
182-361
               

               
Cow position:
               
chr1:52039794-52039627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
185-344
               

               
Cow position:
               
chr1:67539720-67539564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
137, 88
               

               
Conread position:
               
186-373
               

               
Cow position:
               
chr1:86073750-86073572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
184, 29
               

               
Conread position:
               
188-323
               

               
Cow position:
               
chr1:37543628-37543759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
188-372
               

               
Cow position:
               
chr1:32001167-32001334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
196-368
               

               
Cow position:
               
chr1:3914772-3914936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
197-343
               

               
Cow position:
               
chr1:8353528-8353386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
201-371
               

               
Cow position:
               
chr1:74081838-74082002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
202-353
               

               
Cow position:
               
chr1:92603163-92603016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
202-373
               

               
Cow position:
               
chr1:89786053-89785888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
203-344
               

               
Cow position:
               
chr1:90817135-90816997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
24, 70
               

               
Conread position:
               
203-366
               

               
Cow position:
               
chr1:45873927-45874094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
111, 75
               

               
Conread position:
               
203-368
               

               
Cow position:
               
chr1:39068817-39068974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
203-377
               

               
Cow position:
               
chr1:4032775-4032604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
167, 75
               

               
Conread position:
               
204-341
               

               
Cow position:
               
chr1:46100698-46100831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
204-342
               

               
Cow position:
               
chr1:44835645-44835784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
70, 19
               

               
Conread position:
               
204-352
               

               
Cow position:
               
chr1:4524298-4524152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
20, 70
               

               
Conread position:
               
204-352
               

               
Cow position:
               
chr1:82877326-82877183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
204-356
               

               
Cow position:
               
chr1:97939097-97938950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
146, 19
               

               
Conread position:
               
204-362
               

               
Cow position:
               
chr1:98576185-98576035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
204-365
               

               
Cow position:
               
chr1:8347265-8347108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
204-365
               

               
Cow position:
               
chr1:19304712-19304556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
159, 72
               

               
Conread position:
               
204-365
               

               
Cow position:
               
chr1:33996784-33996939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
204-365
               

               
Cow position:
               
chr1:52995168-52995009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
55, 68
               

               
Conread position:
               
204-368
               

               
Cow position:
               
chr1:67918899-67918739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
204-370
               

               
Cow position:
               
chr1:6240141-6240300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
204-371
               

               
Cow position:
               
chr1:53308252-53308409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
204-371
               

               
Cow position:
               
chr1:81580319-81580157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
204-372
               

               
Cow position:
               
chr1:23512516-23512681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
9, 62
               

               
Conread position:
               
204-372
               

               
Cow position:
               
chr1:84010907-84010751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
204-372
               

               
Cow position:
               
chr1:85549938-85550099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
204-372
               

               
Cow position:
               
chr1:95153364-95153202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
204-373
               

               
Cow position:
               
chr1:57297631-57297459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
69, 35
               

               
Conread position:
               
204-374
               

               
Cow position:
               
chr1:80336104-80336273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
22, 75
               

               
Conread position:
               
205-363
               

               
Cow position:
               
chr1:57420595-57420744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
205-370
               

               
Cow position:
               
chr1:26615938-26616096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
133, 30
               

               
Conread position:
               
205-372
               

               
Cow position:
               
chr1:34300408-34300573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
17, 70
               

               
Conread position:
               
205-372
               

               
Cow position:
               
chr1:77880594-77880751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
206-361
               

               
Cow position:
               
chr1:64019381-64019532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
206-371
               

               
Cow position:
               
chr1:48730693-48730849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
206-372
               

               
Cow position:
               
chr1:93554976-93554815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
207-343
               

               
Cow position:
               
chr1:57359601-57359471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
207-365
               

               
Cow position:
               
chr1:56711464-56711614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
207-368
               

               
Cow position:
               
chr1:71643521-71643681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
207-369
               

               
Cow position:
               
chr1:45478724-45478878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
207-373
               

               
Cow position:
               
chr1:24791807-24791968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
209-358
               

               
Cow position:
               
chr1:100569293-100569148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
209-371
               

               
Cow position:
               
chr1:65881942-65881786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
209-372
               

               
Cow position:
               
chr1:84768742-84768900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
209-373
               

               
Cow position:
               
chr1:80422405-80422252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
152, 20
               

               
Conread position:
               
210-339
               

               
Cow position:
               
chr1:45673890-45673765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
210-363
               

               
Cow position:
               
chr1:45007604-45007451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
119, 58
               

               
Conread position:
               
210-371
               

               
Cow position:
               
chr1:74928020-74927864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
210-373
               

               
Cow position:
               
chr1:20864189-20864035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
215-372
               

               
Cow position:
               
chr1:54157427-54157273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
118, 56
               

               
Conread position:
               
215-372
               

               
Cow position:
               
chr1:58037149-58036998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
217-365
               

               
Cow position:
               
chr1:97696873-97696732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
217-369
               

               
Cow position:
               
chr1:42360417-42360267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
217-373
               

               
Cow position:
               
chr1:43311902-43312053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
218-358
               

               
Cow position:
               
chr1:42178873-42178737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
103, 55
               

               
Conread position:
               
223-365
               

               
Cow position:
               
chr1:20732827-20732691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
224-372
               

               
Cow position:
               
chr1:76436602-76436459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
227-372
               

               
Cow position:
               
chr1:5636939-5637080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
228-365
               

               
Cow position:
               
chr1:7908155-7908022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
228-372
               

               
Cow position:
               
chr1:42138977-42138837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
6, 50
               

               
Conread position:
               
229-365
               

               
Cow position:
               
chr1:93810546-93810414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
230-372
               

               
Cow position:
               
chr1:30504617-30504480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
230-372
               

               
Cow position:
               
chr1:72285952-72286089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
231-365
               

               
Cow position:
               
chr1:24561394-24561524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
231-365
               

               
Cow position:
               
chr1:24570832-24570962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
231-372
               

               
Cow position:
               
chr1:95215075-95215212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
236-366
               

               
Cow position:
               
chr1:77683462-77683336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
247-373
               

               
Cow position:
               
chr1:51531850-51531730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
31, 0
               
Show alignments to all cow chromosomes.