Cow genome map

Conread name: rnmm31c_p11.y1

Conread position: 223-572
Cow position: chr1:65923596-65923231 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 253
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 65, 28

Conread position: 230-570
Cow position: chr1:20525585-20525928 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 16

Conread position: 234-576
Cow position: chr1:78923341-78923682 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 238
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 89, 11

Conread position: 236-570
Cow position: chr1:40575331-40575649 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 228
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 9, 0

Conread position: 236-573
Cow position: chr1:12061097-12060754 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 9

Conread position: 236-573
Cow position: chr1:24443244-24442909 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 9

Conread position: 236-573
Cow position: chr1:40749119-40748788 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 230
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 52, 9

Conread position: 236-574
Cow position: chr1:3934143-3933804 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 9

Conread position: 236-574
Cow position: chr1:17011620-17011282 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 9

Conread position: 236-574
Cow position: chr1:21088546-21088885 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 9

Conread position: 236-574
Cow position: chr1:28874196-28874520 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 9

Conread position: 236-574
Cow position: chr1:29363416-29363748 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 236-574
Cow position: chr1:32566807-32566471 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 9

Conread position: 236-574
Cow position: chr1:33552042-33552382 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 9

Conread position: 236-574
Cow position: chr1:33897373-33897713 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 9

Conread position: 236-574
Cow position: chr1:39544907-39545240 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 9

Conread position: 236-574
Cow position: chr1:52358143-52357805 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 253
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 156, 9

Conread position: 236-574
Cow position: chr1:53199660-53199998 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 9

Conread position: 236-574
Cow position: chr1:55275914-55275577 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 9

Conread position: 236-574
Cow position: chr1:56143223-56142891 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 9

Conread position: 236-574
Cow position: chr1:62805056-62804722 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 9

Conread position: 236-574
Cow position: chr1:69404121-69404457 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 9

Conread position: 236-574
Cow position: chr1:69767693-69768033 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 9

Conread position: 236-574
Cow position: chr1:80358055-80357721 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 9

Conread position: 236-574
Cow position: chr1:81777549-81777880 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 238
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 156, 13

Conread position: 236-574
Cow position: chr1:82653779-82654114 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 236-574
Cow position: chr1:85792794-85793134 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 9

Conread position: 236-574
Cow position: chr1:86595379-86595040 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 9

Conread position: 236-574
Cow position: chr1:91900139-91900479 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 13

Conread position: 236-574
Cow position: chr1:93855632-93855967 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 9

Conread position: 236-574
Cow position: chr1:99914541-99914882 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 9

Conread position: 236-574
Cow position: chr1:102433926-102433587 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 9

Conread position: 236-576
Cow position: chr1:65387435-65387771 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 9

Conread position: 238-572
Cow position: chr1:4209323-4209659 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 7

Conread position: 238-574
Cow position: chr1:40056221-40056557 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 7

Conread position: 245-573
Cow position: chr1:79635853-79635536 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 42

Conread position: 245-574
Cow position: chr1:5356250-5356581 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 42

Conread position: 245-574
Cow position: chr1:8826169-8826508 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 46

Conread position: 245-574
Cow position: chr1:17940650-17940317 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 24

Conread position: 245-574
Cow position: chr1:26517764-26517436 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 191

Conread position: 245-574
Cow position: chr1:30519720-30520049 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 157

Conread position: 245-574
Cow position: chr1:33713192-33713524 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 0

Conread position: 245-574
Cow position: chr1:34693807-34694136 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 42

Conread position: 245-574
Cow position: chr1:44972442-44972762 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 64

Conread position: 245-574
Cow position: chr1:55320954-55320619 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 241
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 46, 59

Conread position: 245-574
Cow position: chr1:58177983-58177674 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 243
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 23, 38

Conread position: 245-574
Cow position: chr1:67292751-67293078 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 223
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 140, 159

Conread position: 245-574
Cow position: chr1:68606417-68606095 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 7

Conread position: 246-574
Cow position: chr1:40511887-40511569 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 35

Conread position: 246-574
Cow position: chr1:86611260-86611584 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 219

Conread position: 247-574
Cow position: chr1:5503093-5503421 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 204

Conread position: 247-574
Cow position: chr1:49973060-49972716 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 0

Conread position: 247-574
Cow position: chr1:91446587-91446900 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 153

Conread position: 248-574
Cow position: chr1:30063492-30063809 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 48

Conread position: 249-571
Cow position: chr1:31359536-31359852 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 251-574
Cow position: chr1:34619882-34620190 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 220
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 46, 211

Conread position: 254-574
Cow position: chr1:82923022-82922701 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 190

Conread position: 257-574
Cow position: chr1:39539816-39539501 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 224
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 29, 53

Conread position: 259-573
Cow position: chr1:62243508-62243201 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 63

Conread position: 259-574
Cow position: chr1:31364961-31364645 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 235

Conread position: 264-574
Cow position: chr1:20830033-20830348 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 13

Conread position: 264-574
Cow position: chr1:82912007-82911701 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 218
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 7, 13

Conread position: 264-576
Cow position: chr1:56164690-56164991 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 210
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 7, 13

Conread position: 271-574
Cow position: chr1:72984633-72984927 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 275-574
Cow position: chr1:42737599-42737886 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 181

Conread position: 275-574
Cow position: chr1:88131927-88132229 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 0

Conread position: 298-574
Cow position: chr1:99315421-99315679 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 187
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 64, 0

Conread position: 302-574
Cow position: chr1:74255360-74255069 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 198
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 61, 138

Conread position: 302-574
Cow position: chr1:82477156-82477429 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 195
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 97, 6

Conread position: 305-573
Cow position: chr1:13573758-13574030 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 194
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 84, 39

Conread position: 305-574
Cow position: chr1:81288316-81288588 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 53

Conread position: 309-564
Cow position: chr1:38399209-38399449 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 192
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 87, 103

Conread position: 321-574
Cow position: chr1:3384745-3384504 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 185
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 41, 0

Conread position: 322-573
Cow position: chr1:15474715-15474471 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 172
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 124, 139

Conread position: 322-576
Cow position: chr1:38417337-38417589 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 190
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 69, 148

Conread position: 329-570
Cow position: chr1:18241011-18240775 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 173
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 63, 137

Conread position: 332-572
Cow position: chr1:66486931-66487169 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 171
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 55, 26

Conread position: 339-574
Cow position: chr1:77922922-77923161 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 177
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 53, 0

Conread position: 359-576
Cow position: chr1:7141403-7141190 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 167
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 33, 101

Conread position: 363-576
Cow position: chr1:93235939-93236152 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 175
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 6, 98

Conread position: 389-572
Cow position: chr1:80445419-80445602 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 136
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 389-574
Cow position: chr1:26584370-26584553 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 135
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 15, 0

Conread position: 393-574
Cow position: chr1:87969598-87969771 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 135
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 22, 0

Conread position: 405-574
Cow position: chr1:67002442-67002611 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 122
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 416-574
Cow position: chr1:30074170-30074324 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 129
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 105, 0

Conread position: 418-574
Cow position: chr1:74285376-74285224 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 42, 0

Conread position: 430-574
Cow position: chr1:45018327-45018185 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 108
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 95, 0

Conread position: 447-574
Cow position: chr1:64697035-64697162 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 97
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 451-575
Cow position: chr1:91079557-91079438 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 105
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 81, 9

Show alignments to all cow chromosomes.