Cow genome map
Conread name: | rnmm31c_p11.y1 |
Conread position: | 211-574 |
Cow position: | chr11:30278343-30278705 (view UCSC Genome Browser custom track) |
Alignm length: | 367 |
Alignm identity: | 248 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 41 |
Conread position: | 223-570 |
Cow position: | chr11:43513869-43513513 (view UCSC Genome Browser custom track) |
Alignm length: | 360 |
Alignm identity: | 269 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 59, 22 |
Conread position: | 235-574 |
Cow position: | chr11:26564315-26563985 (view UCSC Genome Browser custom track) |
Alignm length: | 348 |
Alignm identity: | 247 |
Alignm E-value: | 4.00001e-41 |
Alignm gaps (pig, cow): | 14, 7 |
Conread position: | 236-573 |
Cow position: | chr11:9601538-9601213 (view UCSC Genome Browser custom track) |
Alignm length: | 339 |
Alignm identity: | 257 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 133, 9 |
Conread position: | 236-573 |
Cow position: | chr11:17546939-17547277 (view UCSC Genome Browser custom track) |
Alignm length: | 341 |
Alignm identity: | 246 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 156, 9 |
Conread position: | 236-573 |
Cow position: | chr11:30123063-30122731 (view UCSC Genome Browser custom track) |
Alignm length: | 341 |
Alignm identity: | 258 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 156, 9 |
Conread position: | 236-574 |
Cow position: | chr11:3493770-3494104 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 247 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 156, 9 |
Conread position: | 236-574 |
Cow position: | chr11:4026834-4026493 (view UCSC Genome Browser custom track) |
Alignm length: | 345 |
Alignm identity: | 258 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 154, 9 |
Conread position: | 236-574 |
Cow position: | chr11:10848226-10848567 (view UCSC Genome Browser custom track) |
Alignm length: | 344 |
Alignm identity: | 264 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 156, 9 |
Conread position: | 236-574 |
Cow position: | chr11:11988911-11989248 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 156, 9 |
Conread position: | 236-574 |
Cow position: | chr11:12357639-12357296 (view UCSC Genome Browser custom track) |
Alignm length: | 345 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 9 |
Conread position: | 236-574 |
Cow position: | chr11:17106907-17106567 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 247 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 160, 9 |
Conread position: | 236-574 |
Cow position: | chr11:19063296-19062957 (view UCSC Genome Browser custom track) |
Alignm length: | 343 |
Alignm identity: | 247 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 133, 13 |
Conread position: | 236-574 |
Cow position: | chr11:19101719-19101378 (view UCSC Genome Browser custom track) |
Alignm length: | 350 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 83, 9 |
Conread position: | 236-574 |
Cow position: | chr11:20733460-20733123 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 246 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 163, 9 |
Conread position: | 236-574 |
Cow position: | chr11:23880806-23881146 (view UCSC Genome Browser custom track) |
Alignm length: | 343 |
Alignm identity: | 263 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 163, 9 |
Conread position: | 236-574 |
Cow position: | chr11:24394089-24394430 (view UCSC Genome Browser custom track) |
Alignm length: | 344 |
Alignm identity: | 264 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 156, 9 |
Conread position: | 236-574 |
Cow position: | chr11:29667830-29667491 (view UCSC Genome Browser custom track) |
Alignm length: | 343 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 156, 9 |
Conread position: | 236-574 |
Cow position: | chr11:38834659-38834333 (view UCSC Genome Browser custom track) |
Alignm length: | 345 |
Alignm identity: | 246 |
Alignm E-value: | 5.60519e-45 |
Alignm gaps (pig, cow): | 136, 9 |
Conread position: | 236-574 |
Cow position: | chr11:44156471-44156147 (view UCSC Genome Browser custom track) |
Alignm length: | 344 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 163, 9 |
Conread position: | 236-574 |
Cow position: | chr11:57627277-57626937 (view UCSC Genome Browser custom track) |
Alignm length: | 343 |
Alignm identity: | 244 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 156, 9 |
Conread position: | 236-574 |
Cow position: | chr11:63654557-63654219 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 246 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 133, 9 |
Conread position: | 236-574 |
Cow position: | chr11:71330371-71330710 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 256 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 156, 9 |
Conread position: | 236-574 |
Cow position: | chr11:72310258-72309923 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 156, 9 |
Conread position: | 236-574 |
Cow position: | chr11:73134065-73134405 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 244 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 164, 9 |
Conread position: | 238-574 |
Cow position: | chr11:9733900-9733562 (view UCSC Genome Browser custom track) |
Alignm length: | 340 |
Alignm identity: | 235 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 158, 7 |
Conread position: | 238-576 |
Cow position: | chr11:32452605-32452945 (view UCSC Genome Browser custom track) |
Alignm length: | 343 |
Alignm identity: | 243 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 154, 7 |
Conread position: | 242-574 |
Cow position: | chr11:35504423-35504096 (view UCSC Genome Browser custom track) |
Alignm length: | 336 |
Alignm identity: | 237 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 148, 32 |
Conread position: | 245-574 |
Cow position: | chr11:26548301-26548640 (view UCSC Genome Browser custom track) |
Alignm length: | 341 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 75, 212 |
Conread position: | 245-574 |
Cow position: | chr11:49039601-49039260 (view UCSC Genome Browser custom track) |
Alignm length: | 346 |
Alignm identity: | 234 |
Alignm E-value: | 2e-33 |
Alignm gaps (pig, cow): | 53, 131 |
Conread position: | 245-576 |
Cow position: | chr11:41169910-41169579 (view UCSC Genome Browser custom track) |
Alignm length: | 336 |
Alignm identity: | 253 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 147, 212 |
Conread position: | 246-574 |
Cow position: | chr11:29613209-29612880 (view UCSC Genome Browser custom track) |
Alignm length: | 332 |
Alignm identity: | 234 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 146, 281 |
Conread position: | 248-574 |
Cow position: | chr11:17795689-17795343 (view UCSC Genome Browser custom track) |
Alignm length: | 349 |
Alignm identity: | 234 |
Alignm E-value: | 3e-28 |
Alignm gaps (pig, cow): | 28, 14 |
Conread position: | 255-574 |
Cow position: | chr11:47759487-47759165 (view UCSC Genome Browser custom track) |
Alignm length: | 327 |
Alignm identity: | 247 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 27, 61 |
Conread position: | 257-574 |
Cow position: | chr11:9975098-9974789 (view UCSC Genome Browser custom track) |
Alignm length: | 322 |
Alignm identity: | 219 |
Alignm E-value: | 5e-33 |
Alignm gaps (pig, cow): | 22, 45 |
Conread position: | 260-570 |
Cow position: | chr11:28228967-28228657 (view UCSC Genome Browser custom track) |
Alignm length: | 314 |
Alignm identity: | 222 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 139, 239 |
Conread position: | 261-573 |
Cow position: | chr11:33977657-33977333 (view UCSC Genome Browser custom track) |
Alignm length: | 326 |
Alignm identity: | 234 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 283 |
Conread position: | 263-574 |
Cow position: | chr11:50026945-50026623 (view UCSC Genome Browser custom track) |
Alignm length: | 324 |
Alignm identity: | 219 |
Alignm E-value: | 2e-35 |
Alignm gaps (pig, cow): | 129, 18 |
Conread position: | 264-567 |
Cow position: | chr11:61400275-61399973 (view UCSC Genome Browser custom track) |
Alignm length: | 308 |
Alignm identity: | 221 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 13 |
Conread position: | 264-573 |
Cow position: | chr11:21899040-21898730 (view UCSC Genome Browser custom track) |
Alignm length: | 312 |
Alignm identity: | 224 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 42 |
Conread position: | 269-574 |
Cow position: | chr11:85393018-85392719 (view UCSC Genome Browser custom track) |
Alignm length: | 310 |
Alignm identity: | 216 |
Alignm E-value: | 3e-38 |
Alignm gaps (pig, cow): | 127, 175 |
Conread position: | 287-573 |
Cow position: | chr11:1489325-1489054 (view UCSC Genome Browser custom track) |
Alignm length: | 288 |
Alignm identity: | 203 |
Alignm E-value: | 7e-35 |
Alignm gaps (pig, cow): | 34, 38 |
Conread position: | 305-574 |
Cow position: | chr11:67845728-67845455 (view UCSC Genome Browser custom track) |
Alignm length: | 274 |
Alignm identity: | 197 |
Alignm E-value: | 1.96182e-44 |
Alignm gaps (pig, cow): | 5, 0 |
Conread position: | 309-573 |
Cow position: | chr11:2882573-2882310 (view UCSC Genome Browser custom track) |
Alignm length: | 268 |
Alignm identity: | 186 |
Alignm E-value: | 6e-34 |
Alignm gaps (pig, cow): | 90, 21 |
Conread position: | 329-576 |
Cow position: | chr11:10216273-10216024 (view UCSC Genome Browser custom track) |
Alignm length: | 253 |
Alignm identity: | 174 |
Alignm E-value: | 1e-29 |
Alignm gaps (pig, cow): | 49, 184 |
Conread position: | 334-574 |
Cow position: | chr11:63275527-63275286 (view UCSC Genome Browser custom track) |
Alignm length: | 246 |
Alignm identity: | 174 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 51, 38 |
Conread position: | 341-574 |
Cow position: | chr11:6682732-6682968 (view UCSC Genome Browser custom track) |
Alignm length: | 238 |
Alignm identity: | 162 |
Alignm E-value: | 3e-27 |
Alignm gaps (pig, cow): | 63, 126 |
Conread position: | 341-576 |
Cow position: | chr11:54216379-54216141 (view UCSC Genome Browser custom track) |
Alignm length: | 239 |
Alignm identity: | 178 |
Alignm E-value: | 1.96182e-44 |
Alignm gaps (pig, cow): | 55, 0 |
Conread position: | 356-574 |
Cow position: | chr11:38216661-38216426 (view UCSC Genome Browser custom track) |
Alignm length: | 236 |
Alignm identity: | 167 |
Alignm E-value: | 3e-28 |
Alignm gaps (pig, cow): | 40, 0 |
Conread position: | 389-574 |
Cow position: | chr11:31932375-31932561 (view UCSC Genome Browser custom track) |
Alignm length: | 190 |
Alignm identity: | 134 |
Alignm E-value: | 5e-22 |
Alignm gaps (pig, cow): | 64, 76 |
Conread position: | 393-574 |
Cow position: | chr11:25865901-25865724 (view UCSC Genome Browser custom track) |
Alignm length: | 182 |
Alignm identity: | 137 |
Alignm E-value: | 1e-30 |
Alignm gaps (pig, cow): | 27, 0 |
Conread position: | 400-572 |
Cow position: | chr11:10869604-10869771 (view UCSC Genome Browser custom track) |
Alignm length: | 173 |
Alignm identity: | 130 |
Alignm E-value: | 3e-28 |
Alignm gaps (pig, cow): | 108, 0 |
Conread position: | 404-574 |
Cow position: | chr11:23249529-23249355 (view UCSC Genome Browser custom track) |
Alignm length: | 176 |
Alignm identity: | 126 |
Alignm E-value: | 2e-21 |
Alignm gaps (pig, cow): | 15, 121 |
Conread position: | 426-574 |
Cow position: | chr11:21444432-21444576 (view UCSC Genome Browser custom track) |
Alignm length: | 150 |
Alignm identity: | 116 |
Alignm E-value: | 7e-25 |
Alignm gaps (pig, cow): | 52, 32 |
Conread position: | 426-576 |
Cow position: | chr11:36763910-36764057 (view UCSC Genome Browser custom track) |
Alignm length: | 151 |
Alignm identity: | 114 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 14, 0 |
Conread position: | 429-575 |
Cow position: | chr11:44231428-44231587 (view UCSC Genome Browser custom track) |
Alignm length: | 160 |
Alignm identity: | 124 |
Alignm E-value: | 6e-24 |
Alignm gaps (pig, cow): | 14, 0 |
Show alignments to all cow chromosomes.