Cow genome map
| Conread name: | rnmm31c_p11.y1 |
| Conread position: | 167-574 |
| Cow position: | chr15:4686376-4686787 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 188, 327 |
| Conread position: | 227-574 |
| Cow position: | chr15:15982569-15982230 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 224 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 8, 140 |
| Conread position: | 228-574 |
| Cow position: | chr15:19737342-19737000 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 17 |
| Conread position: | 230-570 |
| Cow position: | chr15:6553106-6552764 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 79 |
| Conread position: | 234-574 |
| Cow position: | chr15:7261328-7261660 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 11 |
| Conread position: | 235-574 |
| Cow position: | chr15:58375-58714 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 10 |
| Conread position: | 236-573 |
| Cow position: | chr15:2588729-2588394 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 235 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 109, 9 |
| Conread position: | 236-574 |
| Cow position: | chr15:1782958-1783298 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 9 |
| Conread position: | 236-574 |
| Cow position: | chr15:3009122-3008783 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 9 |
| Conread position: | 236-574 |
| Cow position: | chr15:4386481-4386811 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 9 |
| Conread position: | 236-574 |
| Cow position: | chr15:6155222-6154871 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 9 |
| Conread position: | 236-574 |
| Cow position: | chr15:7234982-7235311 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 9 |
| Conread position: | 236-574 |
| Cow position: | chr15:15346391-15346052 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 9 |
| Conread position: | 236-574 |
| Cow position: | chr15:18577433-18577773 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 9 |
| Conread position: | 236-574 |
| Cow position: | chr15:50123213-50122876 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 9 |
| Conread position: | 237-574 |
| Cow position: | chr15:5010912-5010576 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 234 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 94, 49 |
| Conread position: | 238-572 |
| Cow position: | chr15:2646932-2646596 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 7 |
| Conread position: | 245-570 |
| Cow position: | chr15:38981456-38981784 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 117 |
| Conread position: | 245-572 |
| Cow position: | chr15:4927105-4927419 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 7 |
| Conread position: | 245-572 |
| Cow position: | chr15:5981075-5981403 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 220 |
| Conread position: | 245-573 |
| Cow position: | chr15:1299832-1299493 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 301 |
| Conread position: | 245-573 |
| Cow position: | chr15:4672168-4672488 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 42 |
| Conread position: | 245-573 |
| Cow position: | chr15:4678987-4679319 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 245-573 |
| Cow position: | chr15:4915921-4916234 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 42 |
| Conread position: | 245-574 |
| Cow position: | chr15:4197191-4197522 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 235 |
| Conread position: | 245-574 |
| Cow position: | chr15:4950794-4951117 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 236 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 245-574 |
| Cow position: | chr15:6368077-6367740 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 76, 43 |
| Conread position: | 245-574 |
| Cow position: | chr15:21450408-21450741 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 102 |
| Conread position: | 245-574 |
| Cow position: | chr15:21665014-21664683 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 281 |
| Conread position: | 245-574 |
| Cow position: | chr15:35736517-35736853 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 241 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 27, 192 |
| Conread position: | 245-574 |
| Cow position: | chr15:36625540-36625215 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 231 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 37, 105 |
| Conread position: | 245-574 |
| Cow position: | chr15:48284420-48284755 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 268, 154 |
| Conread position: | 248-576 |
| Cow position: | chr15:41357901-41358221 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 153 |
| Conread position: | 253-574 |
| Cow position: | chr15:17148861-17149179 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 23 |
| Conread position: | 260-572 |
| Cow position: | chr15:1773242-1773557 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 263-574 |
| Cow position: | chr15:4765932-4766247 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 229 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 14, 6 |
| Conread position: | 264-574 |
| Cow position: | chr15:1765050-1765378 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 69, 153 |
| Conread position: | 264-574 |
| Cow position: | chr15:50147823-50148136 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 13 |
| Conread position: | 266-573 |
| Cow position: | chr15:53299220-53299522 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 28, 15 |
| Conread position: | 267-574 |
| Cow position: | chr15:4823218-4823513 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 146, 132 |
| Conread position: | 275-574 |
| Cow position: | chr15:24295844-24296146 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 246 |
| Conread position: | 276-573 |
| Cow position: | chr15:580191-580483 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 11 |
| Conread position: | 276-574 |
| Cow position: | chr15:51715675-51715968 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 116, 12 |
| Conread position: | 286-574 |
| Cow position: | chr15:31860449-31860153 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 215 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 103, 97 |
| Conread position: | 290-574 |
| Cow position: | chr15:12454006-12454289 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 128, 114 |
| Conread position: | 297-571 |
| Cow position: | chr15:611520-611243 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 201 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 95, 229 |
| Conread position: | 321-573 |
| Cow position: | chr15:11293630-11293378 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 189 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 70, 177 |
| Conread position: | 332-574 |
| Cow position: | chr15:2901450-2901206 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 183 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 60, 141 |
| Conread position: | 351-574 |
| Cow position: | chr15:7563826-7564052 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 356-576 |
| Cow position: | chr15:25654234-25654009 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 174 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 365-574 |
| Cow position: | chr15:18266928-18266720 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 62, 34 |
| Conread position: | 378-574 |
| Cow position: | chr15:17036805-17036601 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 20, 94 |
| Conread position: | 389-576 |
| Cow position: | chr15:33725850-33726032 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 135, 45 |
| Conread position: | 413-574 |
| Cow position: | chr15:6591221-6591058 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 418-574 |
| Cow position: | chr15:20361187-20361034 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 51, 0 |
Show alignments to all cow chromosomes.