Cow genome map
| Conread name: | rnmm31c_p11.y1 |
| Conread position: | 215-574 |
| Cow position: | chr3:36877689-36877325 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 28 |
| Conread position: | 217-574 |
| Cow position: | chr3:56398154-56398513 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 77 |
| Conread position: | 218-574 |
| Cow position: | chr3:595108-595463 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 102 |
| Conread position: | 228-574 |
| Cow position: | chr3:37953018-37952664 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 246 |
| Conread position: | 229-574 |
| Cow position: | chr3:15054692-15054370 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 250 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 9, 92 |
| Conread position: | 229-574 |
| Cow position: | chr3:66741907-66741570 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 39, 79 |
| Conread position: | 236-573 |
| Cow position: | chr3:21181709-21181367 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 11 |
| Conread position: | 236-574 |
| Cow position: | chr3:2869780-2870115 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 9 |
| Conread position: | 236-574 |
| Cow position: | chr3:5994100-5993753 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 9 |
| Conread position: | 236-574 |
| Cow position: | chr3:6783356-6783694 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 9 |
| Conread position: | 236-574 |
| Cow position: | chr3:15720706-15721033 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 96, 9 |
| Conread position: | 236-574 |
| Cow position: | chr3:18812491-18812825 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 9 |
| Conread position: | 236-574 |
| Cow position: | chr3:18860404-18860743 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 9 |
| Conread position: | 236-574 |
| Cow position: | chr3:19800185-19799845 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 9 |
| Conread position: | 236-574 |
| Cow position: | chr3:19939880-19940222 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 9 |
| Conread position: | 236-574 |
| Cow position: | chr3:23289343-23289007 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 9 |
| Conread position: | 236-574 |
| Cow position: | chr3:24445086-24444746 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 9 |
| Conread position: | 236-574 |
| Cow position: | chr3:27919414-27919754 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 9 |
| Conread position: | 236-574 |
| Cow position: | chr3:31319142-31319487 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 244 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 41, 201 |
| Conread position: | 236-574 |
| Cow position: | chr3:37970033-37970373 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 9 |
| Conread position: | 236-574 |
| Cow position: | chr3:40824380-40824719 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 9 |
| Conread position: | 236-574 |
| Cow position: | chr3:41209615-41209275 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 9 |
| Conread position: | 236-574 |
| Cow position: | chr3:47080423-47080083 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 9 |
| Conread position: | 236-574 |
| Cow position: | chr3:48058366-48058034 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 9 |
| Conread position: | 236-574 |
| Cow position: | chr3:53516595-53516931 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 9 |
| Conread position: | 236-574 |
| Cow position: | chr3:66621170-66621527 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 9 |
| Conread position: | 236-576 |
| Cow position: | chr3:2709880-2709538 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 9 |
| Conread position: | 236-576 |
| Cow position: | chr3:68872759-68872426 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 238 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 163, 8 |
| Conread position: | 238-572 |
| Cow position: | chr3:1742324-1742656 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 7 |
| Conread position: | 238-572 |
| Cow position: | chr3:4287078-4287414 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 7 |
| Conread position: | 238-572 |
| Cow position: | chr3:34506354-34506019 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 7 |
| Conread position: | 238-574 |
| Cow position: | chr3:7157731-7157393 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 7 |
| Conread position: | 238-574 |
| Cow position: | chr3:64651626-64651964 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 7 |
| Conread position: | 241-570 |
| Cow position: | chr3:15092828-15093167 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 25, 6 |
| Conread position: | 245-572 |
| Cow position: | chr3:2918462-2918794 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 245-572 |
| Cow position: | chr3:10095427-10095738 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 23, 29 |
| Conread position: | 245-572 |
| Cow position: | chr3:46017043-46017378 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 56 |
| Conread position: | 245-572 |
| Cow position: | chr3:56100688-56100356 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 93 |
| Conread position: | 245-573 |
| Cow position: | chr3:2906776-2906443 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 0 |
| Conread position: | 245-573 |
| Cow position: | chr3:65208194-65208509 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 147, 249 |
| Conread position: | 245-574 |
| Cow position: | chr3:3057804-3058142 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 128, 14 |
| Conread position: | 245-574 |
| Cow position: | chr3:24458172-24457858 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 64 |
| Conread position: | 245-574 |
| Cow position: | chr3:29338904-29338577 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 231 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 23, 31 |
| Conread position: | 245-574 |
| Cow position: | chr3:39880009-39879686 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 19 |
| Conread position: | 245-574 |
| Cow position: | chr3:60264021-60263691 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 238 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 137, 85 |
| Conread position: | 245-574 |
| Cow position: | chr3:78026421-78026086 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 215 |
| Conread position: | 245-575 |
| Cow position: | chr3:6877167-6876846 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 42 |
| Conread position: | 245-576 |
| Cow position: | chr3:24292885-24292574 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 246-572 |
| Cow position: | chr3:16887864-16887563 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 263, 45 |
| Conread position: | 246-574 |
| Cow position: | chr3:10240659-10240980 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 230 |
| Conread position: | 246-574 |
| Cow position: | chr3:24588451-24588137 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 26, 44 |
| Conread position: | 246-574 |
| Cow position: | chr3:49544209-49543877 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 249-574 |
| Cow position: | chr3:38494240-38494568 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 166 |
| Conread position: | 249-574 |
| Cow position: | chr3:55892415-55892720 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 242 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 39, 130 |
| Conread position: | 253-574 |
| Cow position: | chr3:42448114-42448443 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 16 |
| Conread position: | 254-574 |
| Cow position: | chr3:82638115-82638422 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 223 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 163, 48 |
| Conread position: | 255-574 |
| Cow position: | chr3:66889962-66889640 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 259-574 |
| Cow position: | chr3:34029915-34029593 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 38 |
| Conread position: | 264-570 |
| Cow position: | chr3:64016356-64016042 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 264-573 |
| Cow position: | chr3:18354990-18354683 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 60 |
| Conread position: | 264-574 |
| Cow position: | chr3:2368323-2368010 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 13 |
| Conread position: | 264-574 |
| Cow position: | chr3:3524038-3524342 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 7, 13 |
| Conread position: | 264-574 |
| Cow position: | chr3:7247558-7247860 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 90 |
| Conread position: | 264-574 |
| Cow position: | chr3:19879660-19879971 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 13 |
| Conread position: | 264-574 |
| Cow position: | chr3:20382042-20382355 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 264-574 |
| Cow position: | chr3:29330275-29329963 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 13 |
| Conread position: | 264-574 |
| Cow position: | chr3:30331107-30330793 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 13 |
| Conread position: | 264-574 |
| Cow position: | chr3:36118909-36119207 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 218 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 7, 13 |
| Conread position: | 269-574 |
| Cow position: | chr3:72783925-72783612 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 9, 19 |
| Conread position: | 269-574 |
| Cow position: | chr3:74226399-74226092 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 33, 67 |
| Conread position: | 274-573 |
| Cow position: | chr3:68302596-68302309 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 275-574 |
| Cow position: | chr3:46688193-46687897 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 160, 30 |
| Conread position: | 275-574 |
| Cow position: | chr3:49136544-49136238 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 277-576 |
| Cow position: | chr3:64823131-64823436 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 251 |
| Conread position: | 280-574 |
| Cow position: | chr3:68358290-68358007 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 105, 25 |
| Conread position: | 283-574 |
| Cow position: | chr3:47087336-47087623 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 207 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 108, 210 |
| Conread position: | 296-574 |
| Cow position: | chr3:53412176-53412456 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 96, 127 |
| Conread position: | 306-573 |
| Cow position: | chr3:652851-652587 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 69, 134 |
| Conread position: | 322-574 |
| Cow position: | chr3:31416093-31416347 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 14 |
| Conread position: | 324-574 |
| Cow position: | chr3:38867392-38867644 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 132 |
| Conread position: | 344-572 |
| Cow position: | chr3:51364692-51364461 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 389-572 |
| Cow position: | chr3:55486144-55486319 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 405-574 |
| Cow position: | chr3:29575966-29575797 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 406-574 |
| Cow position: | chr3:44925220-44925389 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 420-574 |
| Cow position: | chr3:2509867-2509712 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 39, 52 |
Show alignments to all cow chromosomes.