Cow genome map
| Conread name: | rnmm31c_p11.y1 |
| Conread position: | 190-573 |
| Cow position: | chr4:22841516-22841147 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 251 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 25, 85 |
| Conread position: | 216-572 |
| Cow position: | chr4:44924755-44924404 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 26 |
| Conread position: | 231-574 |
| Cow position: | chr4:182637-182981 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 232-574 |
| Cow position: | chr4:99424-99088 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 13 |
| Conread position: | 232-574 |
| Cow position: | chr4:46665315-46665668 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 9 |
| Conread position: | 233-572 |
| Cow position: | chr4:42926232-42925908 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 233 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 236-567 |
| Cow position: | chr4:33072022-33071698 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 236-570 |
| Cow position: | chr4:12240421-12240094 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 9 |
| Conread position: | 236-572 |
| Cow position: | chr4:25598701-25598357 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 9 |
| Conread position: | 236-573 |
| Cow position: | chr4:9847416-9847079 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 9 |
| Conread position: | 236-574 |
| Cow position: | chr4:530200-530535 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 9 |
| Conread position: | 236-574 |
| Cow position: | chr4:1049461-1049127 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 9 |
| Conread position: | 236-574 |
| Cow position: | chr4:3126600-3126940 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 9 |
| Conread position: | 236-574 |
| Cow position: | chr4:5444036-5443695 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 9 |
| Conread position: | 236-574 |
| Cow position: | chr4:10882345-10882684 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 236-574 |
| Cow position: | chr4:12588127-12588462 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 9 |
| Conread position: | 236-574 |
| Cow position: | chr4:13494126-13494460 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 9 |
| Conread position: | 236-574 |
| Cow position: | chr4:17093069-17092732 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 9 |
| Conread position: | 236-574 |
| Cow position: | chr4:18423727-18423386 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 9 |
| Conread position: | 236-574 |
| Cow position: | chr4:26876984-26876647 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 9 |
| Conread position: | 236-574 |
| Cow position: | chr4:31564508-31564153 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 9 |
| Conread position: | 236-574 |
| Cow position: | chr4:36897172-36897510 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 9 |
| Conread position: | 236-574 |
| Cow position: | chr4:41955556-41955893 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 9 |
| Conread position: | 236-574 |
| Cow position: | chr4:44780429-44780090 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 9 |
| Conread position: | 236-574 |
| Cow position: | chr4:50806316-50806642 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 110, 9 |
| Conread position: | 236-574 |
| Cow position: | chr4:57984783-57985122 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 9 |
| Conread position: | 236-574 |
| Cow position: | chr4:60263366-60263027 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 243 |
| Conread position: | 236-574 |
| Cow position: | chr4:67681989-67682327 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 9 |
| Conread position: | 238-572 |
| Cow position: | chr4:45106258-45106594 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 7 |
| Conread position: | 245-573 |
| Cow position: | chr4:61712797-61712486 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 227 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 195, 27 |
| Conread position: | 245-574 |
| Cow position: | chr4:19005507-19005183 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 10 |
| Conread position: | 245-574 |
| Cow position: | chr4:34178433-34178105 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 277 |
| Conread position: | 246-574 |
| Cow position: | chr4:17925158-17924831 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 74 |
| Conread position: | 247-574 |
| Cow position: | chr4:38930211-38930520 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 152, 0 |
| Conread position: | 249-576 |
| Cow position: | chr4:37622-37303 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 145, 42 |
| Conread position: | 250-571 |
| Cow position: | chr4:27974366-27974687 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 215 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 21, 38 |
| Conread position: | 250-574 |
| Cow position: | chr4:31756450-31756778 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 16, 26 |
| Conread position: | 255-574 |
| Cow position: | chr4:6567200-6567514 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 255-576 |
| Cow position: | chr4:28832383-28832679 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 234 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 62, 32 |
| Conread position: | 256-576 |
| Cow position: | chr4:4178076-4178384 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 16 |
| Conread position: | 261-574 |
| Cow position: | chr4:41959716-41960030 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 68 |
| Conread position: | 261-574 |
| Cow position: | chr4:50975447-50975759 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 112 |
| Conread position: | 264-574 |
| Cow position: | chr4:18337676-18337984 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 217 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 7, 13 |
| Conread position: | 264-574 |
| Cow position: | chr4:32212987-32213299 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 13 |
| Conread position: | 272-574 |
| Cow position: | chr4:52268956-52268648 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 222 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 118, 75 |
| Conread position: | 284-572 |
| Cow position: | chr4:1367326-1367063 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 284-573 |
| Cow position: | chr4:9647220-9647500 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 101, 10 |
| Conread position: | 300-574 |
| Cow position: | chr4:41191744-41191468 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 227 |
| Conread position: | 305-573 |
| Cow position: | chr4:63428164-63427893 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 87, 139 |
| Conread position: | 322-574 |
| Cow position: | chr4:41428190-41428443 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 92, 77 |
| Conread position: | 355-570 |
| Cow position: | chr4:9355291-9355508 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 389-574 |
| Cow position: | chr4:47486263-47486446 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 389-574 |
| Cow position: | chr4:47522306-47522492 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 69, 79 |
Show alignments to all cow chromosomes.