Cow genome map

Conread name: rnmm31c_p11.y1

Conread position: 230-574
Cow position: chr5:69622497-69622819 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 238
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 209, 25

Conread position: 231-574
Cow position: chr5:27908380-27908038 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 14

Conread position: 231-574
Cow position: chr5:41527903-41527560 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 11

Conread position: 236-572
Cow position: chr5:34697498-34697832 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 9

Conread position: 236-573
Cow position: chr5:57481645-57481308 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 9

Conread position: 236-573
Cow position: chr5:73488665-73488328 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 9

Conread position: 236-574
Cow position: chr5:1341139-1340797 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 9

Conread position: 236-574
Cow position: chr5:2915343-2915675 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 9

Conread position: 236-574
Cow position: chr5:3786821-3787161 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 9

Conread position: 236-574
Cow position: chr5:4018301-4017965 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 236-574
Cow position: chr5:4070102-4070454 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 9

Conread position: 236-574
Cow position: chr5:4386137-4386470 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 9

Conread position: 236-574
Cow position: chr5:10775375-10775030 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 9

Conread position: 236-574
Cow position: chr5:10842485-10842148 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 238
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 163, 9

Conread position: 236-574
Cow position: chr5:10855922-10855584 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 9

Conread position: 236-574
Cow position: chr5:18121589-18121249 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 9

Conread position: 236-574
Cow position: chr5:24099558-24099894 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 9

Conread position: 236-574
Cow position: chr5:30580232-30580577 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 9

Conread position: 236-574
Cow position: chr5:31707457-31707796 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 9

Conread position: 236-574
Cow position: chr5:32773659-32773998 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 9

Conread position: 236-574
Cow position: chr5:37733241-37733582 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 9

Conread position: 236-574
Cow position: chr5:47830181-47829844 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 9

Conread position: 236-574
Cow position: chr5:49519454-49519789 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 9

Conread position: 236-574
Cow position: chr5:51308966-51308619 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 9

Conread position: 236-574
Cow position: chr5:54791739-54791399 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 9

Conread position: 236-574
Cow position: chr5:55628885-55629227 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 9

Conread position: 236-574
Cow position: chr5:59283210-59283549 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 9

Conread position: 236-574
Cow position: chr5:64781122-64780782 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 9

Conread position: 236-576
Cow position: chr5:5104116-5104457 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 9

Conread position: 236-576
Cow position: chr5:12731816-12731479 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 9

Conread position: 237-574
Cow position: chr5:46664912-46665242 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 0

Conread position: 238-569
Cow position: chr5:26078298-26077964 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 7

Conread position: 238-570
Cow position: chr5:42505900-42506234 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 7

Conread position: 238-570
Cow position: chr5:46808207-46808542 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 7

Conread position: 238-574
Cow position: chr5:988166-987835 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 238-574
Cow position: chr5:35300993-35301331 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 7

Conread position: 238-574
Cow position: chr5:59061532-59061871 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 7

Conread position: 242-574
Cow position: chr5:52424233-52423909 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 221
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 42, 30

Conread position: 245-571
Cow position: chr5:23686990-23686669 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 232
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 43, 76

Conread position: 245-572
Cow position: chr5:41554434-41554104 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 233
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 76, 124

Conread position: 245-572
Cow position: chr5:45701217-45701545 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 42

Conread position: 245-573
Cow position: chr5:29767031-29767355 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 60

Conread position: 245-573
Cow position: chr5:31100521-31100196 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 124

Conread position: 245-574
Cow position: chr5:3503204-3502875 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 75

Conread position: 245-574
Cow position: chr5:18885628-18885303 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 36

Conread position: 245-574
Cow position: chr5:24107782-24107457 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 170

Conread position: 245-574
Cow position: chr5:24151682-24152007 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 62

Conread position: 245-574
Cow position: chr5:60716707-60716384 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 46

Conread position: 245-576
Cow position: chr5:20311451-20311118 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 69

Conread position: 246-575
Cow position: chr5:41960831-41960512 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 42

Conread position: 247-572
Cow position: chr5:14784452-14784138 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 25

Conread position: 251-573
Cow position: chr5:7143139-7142832 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 191
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 81, 23

Conread position: 253-574
Cow position: chr5:18560493-18560173 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 67

Conread position: 255-572
Cow position: chr5:37847469-37847155 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 215
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 127, 48

Conread position: 255-574
Cow position: chr5:12642833-12642516 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 208

Conread position: 263-574
Cow position: chr5:47893625-47893311 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 0

Conread position: 264-573
Cow position: chr5:4757256-4756951 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 220
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 7, 13

Conread position: 264-574
Cow position: chr5:18664704-18665008 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 221
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 7, 13

Conread position: 264-574
Cow position: chr5:23959408-23959097 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 13

Conread position: 264-574
Cow position: chr5:46777314-46777626 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 264

Conread position: 267-573
Cow position: chr5:50409753-50409452 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 202
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 29, 7

Conread position: 269-574
Cow position: chr5:40923713-40923413 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 18

Conread position: 275-574
Cow position: chr5:7274776-7275073 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 87

Conread position: 291-574
Cow position: chr5:62413922-62414210 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 195
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 106, 240

Conread position: 298-569
Cow position: chr5:62361634-62361901 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 192
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 97, 115

Conread position: 307-572
Cow position: chr5:10813787-10813519 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 0

Conread position: 315-573
Cow position: chr5:32281793-32281536 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 199
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 27, 14

Conread position: 324-574
Cow position: chr5:32951882-32952131 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 185
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 68, 142

Conread position: 358-573
Cow position: chr5:65721723-65721520 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 156
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 33, 61

Conread position: 362-573
Cow position: chr5:52434757-52434973 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 168
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 29, 0

Conread position: 389-574
Cow position: chr5:11115702-11115520 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 151
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 134, 0

Conread position: 389-574
Cow position: chr5:53624773-53624594 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 108
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 134, 0

Conread position: 417-574
Cow position: chr5:34189992-34190149 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 425-570
Cow position: chr5:6587500-6587355 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 105
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 425-574
Cow position: chr5:13046741-13046890 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.