Cow genome map
| Conread name: | rnmm31c_p11.y1 |
| Conread position: | 223-576 |
| Cow position: | chr6:64717047-64717398 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 22 |
| Conread position: | 228-429 |
| Cow position: | chr6:6567611-6567810 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 12, 18 |
| Conread position: | 230-570 |
| Cow position: | chr6:28104828-28104494 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 39 |
| Conread position: | 232-574 |
| Cow position: | chr6:25360075-25360418 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 237 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 167, 9 |
| Conread position: | 234-570 |
| Cow position: | chr6:28187785-28187453 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 11 |
| Conread position: | 236-572 |
| Cow position: | chr6:40316620-40316953 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 9 |
| Conread position: | 236-573 |
| Cow position: | chr6:3276338-3275998 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 9 |
| Conread position: | 236-574 |
| Cow position: | chr6:330430-330093 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 234 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 163, 9 |
| Conread position: | 236-574 |
| Cow position: | chr6:703251-703584 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 9 |
| Conread position: | 236-574 |
| Cow position: | chr6:13105094-13105434 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 9 |
| Conread position: | 236-574 |
| Cow position: | chr6:13944943-13945283 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 9 |
| Conread position: | 236-574 |
| Cow position: | chr6:15140143-15139803 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 9 |
| Conread position: | 236-574 |
| Cow position: | chr6:17047087-17047432 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 9 |
| Conread position: | 236-574 |
| Cow position: | chr6:17597272-17596938 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 236-574 |
| Cow position: | chr6:26669829-26669491 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 9 |
| Conread position: | 236-574 |
| Cow position: | chr6:29312535-29312877 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 11 |
| Conread position: | 236-574 |
| Cow position: | chr6:30273861-30273523 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 9 |
| Conread position: | 236-574 |
| Cow position: | chr6:34891090-34890752 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 9 |
| Conread position: | 236-574 |
| Cow position: | chr6:35875678-35875334 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 9 |
| Conread position: | 236-574 |
| Cow position: | chr6:43618757-43619094 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 9 |
| Conread position: | 236-574 |
| Cow position: | chr6:44149523-44149177 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 9 |
| Conread position: | 236-576 |
| Cow position: | chr6:5948748-5948407 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 9 |
| Conread position: | 236-576 |
| Cow position: | chr6:58027708-58028045 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 9 |
| Conread position: | 238-572 |
| Cow position: | chr6:3784803-3785139 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 7 |
| Conread position: | 238-572 |
| Cow position: | chr6:50646148-50645812 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 7 |
| Conread position: | 238-574 |
| Cow position: | chr6:16053143-16053480 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 7 |
| Conread position: | 238-574 |
| Cow position: | chr6:39910370-39910709 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 7 |
| Conread position: | 238-574 |
| Cow position: | chr6:58601519-58601852 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 7 |
| Conread position: | 238-576 |
| Cow position: | chr6:65820937-65820597 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 7 |
| Conread position: | 242-570 |
| Cow position: | chr6:15278775-15278449 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 125 |
| Conread position: | 244-574 |
| Cow position: | chr6:1821572-1821252 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 193 |
| Conread position: | 244-574 |
| Cow position: | chr6:39333828-39333503 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 200 |
| Conread position: | 245-573 |
| Cow position: | chr6:20649034-20648721 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 224 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 27, 16 |
| Conread position: | 245-573 |
| Cow position: | chr6:41553308-41553646 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 233 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 141, 41 |
| Conread position: | 245-574 |
| Cow position: | chr6:1535533-1535202 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 46 |
| Conread position: | 245-574 |
| Cow position: | chr6:7178245-7177917 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 27 |
| Conread position: | 245-574 |
| Cow position: | chr6:15478214-15478551 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 213 |
| Conread position: | 245-574 |
| Cow position: | chr6:28133955-28134280 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 95 |
| Conread position: | 246-568 |
| Cow position: | chr6:60931729-60932053 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 211 |
| Conread position: | 247-576 |
| Cow position: | chr6:21973714-21974043 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 215 |
| Conread position: | 250-574 |
| Cow position: | chr6:58065784-58066102 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 203 |
| Conread position: | 255-572 |
| Cow position: | chr6:9264140-9264460 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 260-572 |
| Cow position: | chr6:40379576-40379262 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 16 |
| Conread position: | 264-570 |
| Cow position: | chr6:2877626-2877317 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 13 |
| Conread position: | 264-574 |
| Cow position: | chr6:2375747-2376055 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 187 |
| Conread position: | 264-574 |
| Cow position: | chr6:45587010-45587322 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 13 |
| Conread position: | 271-574 |
| Cow position: | chr6:65842683-65842986 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 85 |
| Conread position: | 272-572 |
| Cow position: | chr6:46603177-46602874 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 272-574 |
| Cow position: | chr6:47042144-47041838 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 42 |
| Conread position: | 275-570 |
| Cow position: | chr6:25215276-25215584 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 296 |
| Conread position: | 287-574 |
| Cow position: | chr6:59617199-59617484 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 42 |
| Conread position: | 293-572 |
| Cow position: | chr6:46573867-46574149 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 293-574 |
| Cow position: | chr6:43792482-43792198 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 349-572 |
| Cow position: | chr6:47048038-47047812 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 389-572 |
| Cow position: | chr6:28766854-28766671 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.