Cow genome map
Conread name: | rnmm31c_p11.y1 |
Conread position: | 204-576 |
Cow position: | chr9:4649672-4649310 (view UCSC Genome Browser custom track) |
Alignm length: | 378 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 39 |
Conread position: | 228-570 |
Cow position: | chr9:56807414-56807079 (view UCSC Genome Browser custom track) |
Alignm length: | 347 |
Alignm identity: | 233 |
Alignm E-value: | 5e-36 |
Alignm gaps (pig, cow): | 21, 67 |
Conread position: | 228-573 |
Cow position: | chr9:16176722-16177050 (view UCSC Genome Browser custom track) |
Alignm length: | 347 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 10, 134 |
Conread position: | 230-574 |
Cow position: | chr9:31808533-31808884 (view UCSC Genome Browser custom track) |
Alignm length: | 353 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 162, 303 |
Conread position: | 230-576 |
Cow position: | chr9:62736841-62736493 (view UCSC Genome Browser custom track) |
Alignm length: | 361 |
Alignm identity: | 237 |
Alignm E-value: | 6e-27 |
Alignm gaps (pig, cow): | 53, 231 |
Conread position: | 236-570 |
Cow position: | chr9:21410260-21410597 (view UCSC Genome Browser custom track) |
Alignm length: | 340 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 156, 9 |
Conread position: | 236-570 |
Cow position: | chr9:30827700-30828037 (view UCSC Genome Browser custom track) |
Alignm length: | 339 |
Alignm identity: | 238 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 156, 9 |
Conread position: | 236-573 |
Cow position: | chr9:7061117-7060777 (view UCSC Genome Browser custom track) |
Alignm length: | 345 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 156, 9 |
Conread position: | 236-574 |
Cow position: | chr9:1995427-1995086 (view UCSC Genome Browser custom track) |
Alignm length: | 343 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 156, 9 |
Conread position: | 236-574 |
Cow position: | chr9:3005273-3004944 (view UCSC Genome Browser custom track) |
Alignm length: | 339 |
Alignm identity: | 240 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 13, 0 |
Conread position: | 236-574 |
Cow position: | chr9:4942844-4942509 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 156, 9 |
Conread position: | 236-574 |
Cow position: | chr9:6250262-6250601 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 256 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 155, 9 |
Conread position: | 236-574 |
Cow position: | chr9:10322766-10323104 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 171, 9 |
Conread position: | 236-574 |
Cow position: | chr9:17305013-17304675 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 256 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 149, 9 |
Conread position: | 236-574 |
Cow position: | chr9:18508859-18508523 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 171, 9 |
Conread position: | 236-574 |
Cow position: | chr9:22654539-22654879 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 264 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 163, 9 |
Conread position: | 236-574 |
Cow position: | chr9:28678935-28679275 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 242 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 160, 9 |
Conread position: | 236-574 |
Cow position: | chr9:29027248-29026907 (view UCSC Genome Browser custom track) |
Alignm length: | 344 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 156, 9 |
Conread position: | 236-574 |
Cow position: | chr9:30673333-30673680 (view UCSC Genome Browser custom track) |
Alignm length: | 349 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 9 |
Conread position: | 236-574 |
Cow position: | chr9:32969911-32970244 (view UCSC Genome Browser custom track) |
Alignm length: | 346 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 156, 9 |
Conread position: | 236-574 |
Cow position: | chr9:37161850-37161510 (view UCSC Genome Browser custom track) |
Alignm length: | 343 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 13 |
Conread position: | 236-574 |
Cow position: | chr9:59537061-59537398 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 251 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 156, 9 |
Conread position: | 238-572 |
Cow position: | chr9:46859497-46859161 (view UCSC Genome Browser custom track) |
Alignm length: | 338 |
Alignm identity: | 246 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 154, 7 |
Conread position: | 244-574 |
Cow position: | chr9:35315909-35315590 (view UCSC Genome Browser custom track) |
Alignm length: | 332 |
Alignm identity: | 233 |
Alignm E-value: | 9.94922e-44 |
Alignm gaps (pig, cow): | 53, 43 |
Conread position: | 245-572 |
Cow position: | chr9:17069921-17069608 (view UCSC Genome Browser custom track) |
Alignm length: | 332 |
Alignm identity: | 215 |
Alignm E-value: | 4e-22 |
Alignm gaps (pig, cow): | 186, 16 |
Conread position: | 245-573 |
Cow position: | chr9:6977303-6977628 (view UCSC Genome Browser custom track) |
Alignm length: | 339 |
Alignm identity: | 230 |
Alignm E-value: | 1e-30 |
Alignm gaps (pig, cow): | 45, 6 |
Conread position: | 245-573 |
Cow position: | chr9:44819119-44819443 (view UCSC Genome Browser custom track) |
Alignm length: | 330 |
Alignm identity: | 232 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 154, 98 |
Conread position: | 245-574 |
Cow position: | chr9:2212110-2212440 (view UCSC Genome Browser custom track) |
Alignm length: | 335 |
Alignm identity: | 232 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 147, 17 |
Conread position: | 245-574 |
Cow position: | chr9:20939293-20939611 (view UCSC Genome Browser custom track) |
Alignm length: | 334 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 145, 26 |
Conread position: | 245-574 |
Cow position: | chr9:39731088-39730761 (view UCSC Genome Browser custom track) |
Alignm length: | 336 |
Alignm identity: | 236 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 43, 93 |
Conread position: | 245-574 |
Cow position: | chr9:50791684-50792013 (view UCSC Genome Browser custom track) |
Alignm length: | 333 |
Alignm identity: | 236 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 147, 114 |
Conread position: | 245-574 |
Cow position: | chr9:59481825-59481497 (view UCSC Genome Browser custom track) |
Alignm length: | 334 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 145, 208 |
Conread position: | 245-575 |
Cow position: | chr9:3727573-3727893 (view UCSC Genome Browser custom track) |
Alignm length: | 336 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 44 |
Conread position: | 245-576 |
Cow position: | chr9:25188070-25188399 (view UCSC Genome Browser custom track) |
Alignm length: | 337 |
Alignm identity: | 247 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 212 |
Conread position: | 246-574 |
Cow position: | chr9:5141686-5142001 (view UCSC Genome Browser custom track) |
Alignm length: | 330 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 63, 35 |
Conread position: | 249-574 |
Cow position: | chr9:26083578-26083269 (view UCSC Genome Browser custom track) |
Alignm length: | 328 |
Alignm identity: | 236 |
Alignm E-value: | 9.80909e-45 |
Alignm gaps (pig, cow): | 72, 19 |
Conread position: | 254-573 |
Cow position: | chr9:828127-827806 (view UCSC Genome Browser custom track) |
Alignm length: | 323 |
Alignm identity: | 238 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 138, 22 |
Conread position: | 255-574 |
Cow position: | chr9:13474793-13474473 (view UCSC Genome Browser custom track) |
Alignm length: | 325 |
Alignm identity: | 229 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 31, 131 |
Conread position: | 257-574 |
Cow position: | chr9:47042942-47043260 (view UCSC Genome Browser custom track) |
Alignm length: | 323 |
Alignm identity: | 231 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 14, 20 |
Conread position: | 258-574 |
Cow position: | chr9:29627772-29627451 (view UCSC Genome Browser custom track) |
Alignm length: | 323 |
Alignm identity: | 244 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 134, 33 |
Conread position: | 264-574 |
Cow position: | chr9:3309617-3309916 (view UCSC Genome Browser custom track) |
Alignm length: | 314 |
Alignm identity: | 222 |
Alignm E-value: | 9.99967e-42 |
Alignm gaps (pig, cow): | 135, 48 |
Conread position: | 266-574 |
Cow position: | chr9:17543256-17543548 (view UCSC Genome Browser custom track) |
Alignm length: | 310 |
Alignm identity: | 203 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 49, 97 |
Conread position: | 266-574 |
Cow position: | chr9:46461057-46460756 (view UCSC Genome Browser custom track) |
Alignm length: | 313 |
Alignm identity: | 213 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 13, 33 |
Conread position: | 271-570 |
Cow position: | chr9:47003181-47003473 (view UCSC Genome Browser custom track) |
Alignm length: | 305 |
Alignm identity: | 221 |
Alignm E-value: | 4.06377e-44 |
Alignm gaps (pig, cow): | 8, 194 |
Conread position: | 271-574 |
Cow position: | chr9:59428007-59428306 (view UCSC Genome Browser custom track) |
Alignm length: | 304 |
Alignm identity: | 215 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 94, 0 |
Conread position: | 275-574 |
Cow position: | chr9:3543851-3544182 (view UCSC Genome Browser custom track) |
Alignm length: | 332 |
Alignm identity: | 228 |
Alignm E-value: | 2e-28 |
Alignm gaps (pig, cow): | 50, 0 |
Conread position: | 275-574 |
Cow position: | chr9:4666189-4666471 (view UCSC Genome Browser custom track) |
Alignm length: | 302 |
Alignm identity: | 212 |
Alignm E-value: | 1e-34 |
Alignm gaps (pig, cow): | 117, 19 |
Conread position: | 275-574 |
Cow position: | chr9:37970206-37969908 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 224 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 124, 206 |
Conread position: | 300-574 |
Cow position: | chr9:38677170-38677447 (view UCSC Genome Browser custom track) |
Alignm length: | 278 |
Alignm identity: | 201 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 99, 0 |
Conread position: | 314-572 |
Cow position: | chr9:4836301-4836042 (view UCSC Genome Browser custom track) |
Alignm length: | 267 |
Alignm identity: | 203 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 82, 154 |
Conread position: | 323-574 |
Cow position: | chr9:25034515-25034261 (view UCSC Genome Browser custom track) |
Alignm length: | 255 |
Alignm identity: | 183 |
Alignm E-value: | 3.00004e-41 |
Alignm gaps (pig, cow): | 69, 0 |
Conread position: | 325-573 |
Cow position: | chr9:59447568-59447809 (view UCSC Genome Browser custom track) |
Alignm length: | 250 |
Alignm identity: | 144 |
Alignm E-value: | 2e-26 |
Alignm gaps (pig, cow): | 232, 135 |
Conread position: | 335-570 |
Cow position: | chr9:17901502-17901267 (view UCSC Genome Browser custom track) |
Alignm length: | 240 |
Alignm identity: | 175 |
Alignm E-value: | 2e-36 |
Alignm gaps (pig, cow): | 47, 13 |
Conread position: | 339-576 |
Cow position: | chr9:20176651-20176404 (view UCSC Genome Browser custom track) |
Alignm length: | 249 |
Alignm identity: | 185 |
Alignm E-value: | 8.99998e-41 |
Alignm gaps (pig, cow): | 47, 183 |
Conread position: | 344-574 |
Cow position: | chr9:1075119-1074876 (view UCSC Genome Browser custom track) |
Alignm length: | 244 |
Alignm identity: | 166 |
Alignm E-value: | 5e-25 |
Alignm gaps (pig, cow): | 48, 0 |
Conread position: | 365-574 |
Cow position: | chr9:2679360-2679567 (view UCSC Genome Browser custom track) |
Alignm length: | 211 |
Alignm identity: | 144 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 106, 16 |
Conread position: | 404-576 |
Cow position: | chr9:2172083-2172251 (view UCSC Genome Browser custom track) |
Alignm length: | 174 |
Alignm identity: | 129 |
Alignm E-value: | 2e-26 |
Alignm gaps (pig, cow): | 125, 57 |
Conread position: | 412-574 |
Cow position: | chr9:2210899-2211060 (view UCSC Genome Browser custom track) |
Alignm length: | 165 |
Alignm identity: | 122 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 12, 25 |
Conread position: | 435-572 |
Cow position: | chr9:50094076-50093939 (view UCSC Genome Browser custom track) |
Alignm length: | 138 |
Alignm identity: | 103 |
Alignm E-value: | 4e-23 |
Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.