Cow genome map

Conread name: rnmm31c_p11.y1

Conread position: 204-576
Cow position: chr9:4649672-4649310 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 39

Conread position: 228-570
Cow position: chr9:56807414-56807079 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 233
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 21, 67

Conread position: 228-573
Cow position: chr9:16176722-16177050 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 134

Conread position: 230-574
Cow position: chr9:31808533-31808884 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 303

Conread position: 230-576
Cow position: chr9:62736841-62736493 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 237
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 53, 231

Conread position: 236-570
Cow position: chr9:21410260-21410597 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 9

Conread position: 236-570
Cow position: chr9:30827700-30828037 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 9

Conread position: 236-573
Cow position: chr9:7061117-7060777 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 9

Conread position: 236-574
Cow position: chr9:1995427-1995086 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 9

Conread position: 236-574
Cow position: chr9:3005273-3004944 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 0

Conread position: 236-574
Cow position: chr9:4942844-4942509 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 9

Conread position: 236-574
Cow position: chr9:6250262-6250601 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 9

Conread position: 236-574
Cow position: chr9:10322766-10323104 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 9

Conread position: 236-574
Cow position: chr9:17305013-17304675 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 9

Conread position: 236-574
Cow position: chr9:18508859-18508523 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 9

Conread position: 236-574
Cow position: chr9:22654539-22654879 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 9

Conread position: 236-574
Cow position: chr9:28678935-28679275 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 9

Conread position: 236-574
Cow position: chr9:29027248-29026907 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 9

Conread position: 236-574
Cow position: chr9:30673333-30673680 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 9

Conread position: 236-574
Cow position: chr9:32969911-32970244 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 9

Conread position: 236-574
Cow position: chr9:37161850-37161510 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 13

Conread position: 236-574
Cow position: chr9:59537061-59537398 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 9

Conread position: 238-572
Cow position: chr9:46859497-46859161 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 7

Conread position: 244-574
Cow position: chr9:35315909-35315590 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 233
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 53, 43

Conread position: 245-572
Cow position: chr9:17069921-17069608 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 215
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 186, 16

Conread position: 245-573
Cow position: chr9:6977303-6977628 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 230
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 45, 6

Conread position: 245-573
Cow position: chr9:44819119-44819443 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 98

Conread position: 245-574
Cow position: chr9:2212110-2212440 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 232
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 147, 17

Conread position: 245-574
Cow position: chr9:20939293-20939611 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 26

Conread position: 245-574
Cow position: chr9:39731088-39730761 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 93

Conread position: 245-574
Cow position: chr9:50791684-50792013 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 114

Conread position: 245-574
Cow position: chr9:59481825-59481497 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 208

Conread position: 245-575
Cow position: chr9:3727573-3727893 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 44

Conread position: 245-576
Cow position: chr9:25188070-25188399 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 212

Conread position: 246-574
Cow position: chr9:5141686-5142001 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 35

Conread position: 249-574
Cow position: chr9:26083578-26083269 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 236
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 72, 19

Conread position: 254-573
Cow position: chr9:828127-827806 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 22

Conread position: 255-574
Cow position: chr9:13474793-13474473 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 131

Conread position: 257-574
Cow position: chr9:47042942-47043260 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 20

Conread position: 258-574
Cow position: chr9:29627772-29627451 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 33

Conread position: 264-574
Cow position: chr9:3309617-3309916 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 222
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 135, 48

Conread position: 266-574
Cow position: chr9:17543256-17543548 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 203
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 49, 97

Conread position: 266-574
Cow position: chr9:46461057-46460756 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 213
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 13, 33

Conread position: 271-570
Cow position: chr9:47003181-47003473 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 221
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 8, 194

Conread position: 271-574
Cow position: chr9:59428007-59428306 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 0

Conread position: 275-574
Cow position: chr9:3543851-3544182 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 228
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 50, 0

Conread position: 275-574
Cow position: chr9:4666189-4666471 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 212
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 117, 19

Conread position: 275-574
Cow position: chr9:37970206-37969908 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 206

Conread position: 300-574
Cow position: chr9:38677170-38677447 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 0

Conread position: 314-572
Cow position: chr9:4836301-4836042 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 154

Conread position: 323-574
Cow position: chr9:25034515-25034261 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 183
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 69, 0

Conread position: 325-573
Cow position: chr9:59447568-59447809 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 144
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 232, 135

Conread position: 335-570
Cow position: chr9:17901502-17901267 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 175
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 47, 13

Conread position: 339-576
Cow position: chr9:20176651-20176404 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 185
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 47, 183

Conread position: 344-574
Cow position: chr9:1075119-1074876 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 166
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 48, 0

Conread position: 365-574
Cow position: chr9:2679360-2679567 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 144
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 106, 16

Conread position: 404-576
Cow position: chr9:2172083-2172251 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 129
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 125, 57

Conread position: 412-574
Cow position: chr9:2210899-2211060 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 12, 25

Conread position: 435-572
Cow position: chr9:50094076-50093939 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 103
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.