Cow genome map

Conread name: rnmm31c_p11.y1

Conread position: 213-574
Cow position: chrX:5651791-5651446 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 258
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 16, 31

Conread position: 226-574
Cow position: chrX:15600020-15600355 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 19

Conread position: 229-574
Cow position: chrX:18553291-18553629 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 244
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 12, 17

Conread position: 229-576
Cow position: chrX:24523608-24523967 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 252
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 53, 32

Conread position: 230-573
Cow position: chrX:25430426-25430093 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 227
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 153, 208

Conread position: 230-574
Cow position: chrX:983526-983873 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 15

Conread position: 232-574
Cow position: chrX:16362257-16361913 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 13

Conread position: 234-574
Cow position: chrX:28650685-28650342 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 11

Conread position: 236-568
Cow position: chrX:9093444-9093779 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 9

Conread position: 236-573
Cow position: chrX:1834687-1835021 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 9

Conread position: 236-573
Cow position: chrX:7031332-7031671 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 9

Conread position: 236-573
Cow position: chrX:27619264-27618925 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 9

Conread position: 236-573
Cow position: chrX:30183067-30182722 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 9

Conread position: 236-574
Cow position: chrX:2577295-2577632 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 9

Conread position: 236-574
Cow position: chrX:5322857-5322520 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 233
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 32, 13

Conread position: 236-574
Cow position: chrX:6872201-6871866 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 9

Conread position: 236-574
Cow position: chrX:8589032-8589370 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 9

Conread position: 236-574
Cow position: chrX:8610831-8610496 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 9

Conread position: 236-574
Cow position: chrX:8962704-8962365 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 9

Conread position: 236-574
Cow position: chrX:12287534-12287194 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 9

Conread position: 236-574
Cow position: chrX:12702834-12702496 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 9

Conread position: 236-574
Cow position: chrX:15623631-15623293 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 9

Conread position: 236-574
Cow position: chrX:16463446-16463109 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 9

Conread position: 236-574
Cow position: chrX:17052413-17052752 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 9

Conread position: 236-574
Cow position: chrX:23040254-23039919 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 9

Conread position: 236-574
Cow position: chrX:23277896-23278228 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 9

Conread position: 236-574
Cow position: chrX:23389646-23389312 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 9

Conread position: 236-574
Cow position: chrX:26757745-26757421 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 9

Conread position: 236-574
Cow position: chrX:27316145-27316485 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 9

Conread position: 236-574
Cow position: chrX:27425456-27425115 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 9

Conread position: 236-574
Cow position: chrX:29172893-29172553 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 9

Conread position: 236-574
Cow position: chrX:29885858-29886199 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 13

Conread position: 236-574
Cow position: chrX:29910560-29910221 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 9

Conread position: 236-574
Cow position: chrX:31199431-31199764 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 9

Conread position: 236-574
Cow position: chrX:38148465-38148805 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 9

Conread position: 238-570
Cow position: chrX:7482505-7482837 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 7

Conread position: 238-570
Cow position: chrX:13053898-13054217 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 229
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 59, 31

Conread position: 238-570
Cow position: chrX:13397347-13397014 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 7

Conread position: 238-572
Cow position: chrX:15980087-15979752 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 7

Conread position: 238-572
Cow position: chrX:30201860-30201532 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 7

Conread position: 238-574
Cow position: chrX:5864265-5864603 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 7

Conread position: 238-574
Cow position: chrX:17477553-17477215 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 7

Conread position: 238-575
Cow position: chrX:27986953-27986620 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 231
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 43, 7

Conread position: 245-570
Cow position: chrX:30011876-30012202 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 282

Conread position: 245-570
Cow position: chrX:30068968-30068646 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 232
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 214, 42

Conread position: 245-570
Cow position: chrX:32559473-32559146 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 219
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 246, 24

Conread position: 245-572
Cow position: chrX:41888118-41887804 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 117

Conread position: 245-573
Cow position: chrX:1547856-1548186 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 228

Conread position: 245-573
Cow position: chrX:7752777-7753114 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 0

Conread position: 245-573
Cow position: chrX:18242046-18242362 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 0

Conread position: 245-574
Cow position: chrX:2481754-2481423 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 0

Conread position: 245-574
Cow position: chrX:12354113-12354444 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 42

Conread position: 245-574
Cow position: chrX:17666907-17666586 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 167

Conread position: 245-574
Cow position: chrX:21269178-21268842 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 243
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 92, 236

Conread position: 245-574
Cow position: chrX:24808728-24808396 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 221
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 130, 256

Conread position: 245-574
Cow position: chrX:27593110-27592779 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 222

Conread position: 245-574
Cow position: chrX:30365908-30365591 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 168

Conread position: 245-574
Cow position: chrX:34219188-34219509 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 139

Conread position: 245-574
Cow position: chrX:44388641-44388967 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 34

Conread position: 245-576
Cow position: chrX:4752749-4752417 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 270

Conread position: 245-576
Cow position: chrX:13182248-13181937 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 44

Conread position: 246-574
Cow position: chrX:21059662-21059972 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 234
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 146, 76

Conread position: 246-574
Cow position: chrX:21830408-21830726 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 221

Conread position: 248-574
Cow position: chrX:29097076-29097406 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 0

Conread position: 250-574
Cow position: chrX:22816742-22817045 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 223
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 91, 0

Conread position: 255-570
Cow position: chrX:11422758-11423074 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 166

Conread position: 255-574
Cow position: chrX:28626740-28626423 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 0

Conread position: 256-574
Cow position: chrX:24134371-24134060 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 165

Conread position: 259-574
Cow position: chrX:321357-321676 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 151

Conread position: 260-570
Cow position: chrX:14595740-14596050 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 61

Conread position: 264-570
Cow position: chrX:3467750-3467441 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 13

Conread position: 264-570
Cow position: chrX:5282884-5282576 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 216
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 7, 13

Conread position: 264-572
Cow position: chrX:12480890-12481203 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 5

Conread position: 264-573
Cow position: chrX:16811547-16811239 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 219
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 128, 37

Conread position: 264-574
Cow position: chrX:3084241-3083930 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 13

Conread position: 264-574
Cow position: chrX:15178540-15178227 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 220
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 7, 13

Conread position: 264-574
Cow position: chrX:18658895-18658601 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 220
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 135, 57

Conread position: 264-574
Cow position: chrX:35530749-35531062 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 13

Conread position: 264-574
Cow position: chrX:37813050-37813359 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 13

Conread position: 264-576
Cow position: chrX:31053788-31053489 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 218
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 114, 38

Conread position: 265-558
Cow position: chrX:29778613-29778320 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 205
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 127, 40

Conread position: 265-574
Cow position: chrX:28560995-28560688 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 221
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 97, 136

Conread position: 269-574
Cow position: chrX:7094304-7094611 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 18

Conread position: 271-574
Cow position: chrX:15486865-15486572 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 223
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 119, 89

Conread position: 273-572
Cow position: chrX:27390295-27389995 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 211
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 112, 82

Conread position: 274-574
Cow position: chrX:21491062-21491371 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 224
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 118, 32

Conread position: 279-574
Cow position: chrX:46235655-46235953 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 8

Conread position: 290-574
Cow position: chrX:27083889-27084175 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 230

Conread position: 293-572
Cow position: chrX:18451904-18452186 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 0

Conread position: 293-574
Cow position: chrX:28521670-28521393 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 205
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 106, 163

Conread position: 295-574
Cow position: chrX:16780219-16780495 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 195
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 101, 49

Conread position: 300-572
Cow position: chrX:20035470-20035195 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 161
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 92, 0

Conread position: 323-574
Cow position: chrX:2535114-2534863 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 133

Conread position: 329-574
Cow position: chrX:24771902-24771654 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 177
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 70, 0

Conread position: 353-570
Cow position: chrX:26399143-26398923 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 154
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 43, 115

Conread position: 365-570
Cow position: chrX:13447830-13447622 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 146
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 27, 0

Conread position: 365-572
Cow position: chrX:16684840-16684630 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 152
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 27, 0

Conread position: 417-574
Cow position: chrX:21753376-21753226 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 33, 0

Conread position: 430-576
Cow position: chrX:8938696-8938550 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 109
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 73, 33

Conread position: 434-574
Cow position: chrX:27495779-27495921 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 105
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 435-574
Cow position: chrX:36251248-36251108 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 103
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 438-574
Cow position: chrX:12284013-12284147 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 19, 27

Show alignments to all cow chromosomes.